Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003047

Physical Location & Seq

Genomic Coordinates Forward (+)

20171540 .. 20172883

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G228600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGACGACATGGACGACGACACAAGGTACCATTCGAAGGCCTACTCTCTCAACCATCATAACTCTTCTGGTCGCCGAAAAATCAATATACGAAACACCCAATATTCTCGCCCGATTGCCAATCGATACGCAGAGGAAGACGACGACGAATTGGACGAGTTTGATGAAGGAAATGGCCGACAAGACCACGACGAGGAAGAGGAAGAGGAGCATCCACGTGGGTTACATCGGAATTTTGACGCGGACGATGGTTTTGAAAGGCACACGAAGAAGAGGAAGGTGAAGAATTTGGAATCAAACTACGAGTTTGCGCCTCGCGTGAGAGTGCCGTATAGGGATCCGAGTTCTCGGGGCGAAGAGGATTGGACTGAGCACGCGGTGTTTGTTCTGTTAGAGGTTTGGGGTGATAGGTTTCTTCAGCTTGGGAGGAAGAGTTTGAGGTCTGAAGATTGGCGTGAAGTGGCCGAGAAGGTTTCAGAGGCGTCTAAGATCGAAAGGACTGACACGCAATGCAGGAGTATGTTGGATATGCTTAAGAGGAAGTACAAGAAGGAGAAGGAGAAAGTTGAAGAAATGGGGTTGAATTCTAGCAAATGGGCTTACTTTAAGAAGATGGATATGTTAATGGCTTCGTCCTTGAGGCAAGAATGCGGGCTTGCTTGCGGGGTAGATTCCGGTGAGTATGTGTTTATGAACACAAGGGTATATTTGGAGCGGTCAAATGGGTTTGATGAGATGAGGGATAGTCCTGGTGAGTCAGAGACAGATGAGGATGAGGATGGGAATGATGATCAGGATGCCTTTCCGCCACGAATGGGGATGCGTGGAGTGGATAGGGGGGAGGAAGGGTCTTCGTATAGAGTGTTGGCGGATTCTATTCACAAGTTTGGGGAGATTTATGAGAAGATTGAGAGTAGTAAGAGGCAGCAGATGAGGGAATTGGAGAAGATGAGGAAAGATTTCCATAAGGAGTTGGAATTTCAGAAGAAGCAGATTCTTGAGAGAGCACAAGTGGAGATTGCGAAAATTCAGGAAGCTGACGATGATGATGAAACGGATGTTTCTGCTGAGGATCTCAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

362

Amino Acids

42.57

Weight (kDa)

4.86

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24490
fragaria_vesca	FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_6g31095 FvH4_6g31095
malus_domestica	MD09G1212700.v1.1 MD15G1188000.v1.1 MD17G1195600.v1.1
prunus_persica	Prupe.3G071500_v2.0.a1 Prupe.3G071500_v2.0.a1 Prupe.7G228600_v2.0.a1
pyrus_communis	pycom09g13040 pycom15g16850 pycom17g20120
rosa_chinensis	RchiOBHm_Chr2g0090791 RchiOBHm_Chr2g0137821
rosa_laevigata	RLG00000016143 RLG00000019678
rosa_multiflora	Rmu_sc0002170.1_g000002 Rmu_ssc0000367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106790 Rroxscaffold_2G00150820
rosa_rugosa	Rorug02G0010500 Rorug02G0346200 Rorug02G0346300
rosa_samantha	Rh2AG056500 Rh2AG393000 Rh2BG055200 Rh2BG400700 Rh2CG057600 Rh2CG379700 Rh2DG056200 Rh2DG415600
rosa_wichuraiana	Rw2G004600 Rw2G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	27
AccB1I	GGYRCC	1 cut(s)	27
AccBSI	CCGCTC	1 cut(s)	715
AccII	CGCG	3 cut(s)	242, 318, 377
AciI	CCGC	7 cut(s)	242, 377, 651, 663, 715, 806, 869
AclWI	GGATC	3 cut(s)	332, 345, 1080
AcoI	YGGCCR	2 cut(s)	175, 462
AcsI	RAATTY	5 cut(s)	232, 286, 583, 977, 1026
AcuI	CTGAAG	2 cut(s)	401, 465
AcvI	CACGTG	1 cut(s)	218
AcyI	GRCGYC	1 cut(s)	482
AdeI	CACNNNGTG	1 cut(s)	379
AfaI	GTAC	2 cut(s)	29, 545
AfiI	CCNNNNNNNGG	3 cut(s)	37, 193, 815
AflII	CTTAAG	1 cut(s)	533
AgsI	TTSAA	3 cut(s)	257, 569, 583
AjnI	CCWGG	1 cut(s)	748
AluBI	AGCT	2 cut(s)	421, 1037
AluI	AGCT	2 cut(s)	421, 1037
Alw21I	GWGCWC	2 cut(s)	375, 1009
Alw26I	GTCTC	1 cut(s)	755
AlwI	GGATC	3 cut(s)	332, 345, 1080
Ama87I	CYCGRG	1 cut(s)	348
AoxI	GGCC	3 cut(s)	39, 175, 462
ApeKI	GCWGC	1 cut(s)	925
ApoI	RAATTY	5 cut(s)	232, 286, 583, 977, 1026
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
Asp700I	GAANNNNTTC	1 cut(s)	959
Asp718I	GGTACC	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	313
AsuHPI	GGTGA	4 cut(s)	292, 416, 689, 764
AsuII	TTCGAA	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	348
BamHI	GGATCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	27
BbrPI	CACGTG	1 cut(s)	218
BbsI	GAAGAC	2 cut(s)	144, 843
Bbv12I	GWGCWC	2 cut(s)	375, 1009
BbvCI	CCTCAGC	1 cut(s)	1068
BbvI	GCAGC	1 cut(s)	937
BccI	CCATC	4 cut(s)	63, 242, 607, 773
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	750
BclI	TGATCA	1 cut(s)	790
BcoDI	GTCTC	1 cut(s)	755
BfaI	CTAG	1 cut(s)	588
BfrI	CTTAAG	1 cut(s)	533
BisI	GCNGC	1 cut(s)	926
BlsI	GCNGC	1 cut(s)	927
Bme1390I	CCNGG	1 cut(s)	750
BmeT110I	CYCGRG	1 cut(s)	348
BmiI	GGNNCC	2 cut(s)	29, 339
BmrFI	CCNGG	1 cut(s)	750
BmsI	GCATC	3 cut(s)	220, 787, 810
BpiI	GAAGAC	2 cut(s)	144, 843
Bpu10I	CCTNAGC	1 cut(s)	1068
Bpu14I	TTCGAA	1 cut(s)	35
BpuEI	CTTGAG	2 cut(s)	658, 1019
Bsa29I	ATCGAT	1 cut(s)	124
BsaAI	YACGTR	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	482
BsaWI	WCCGGW	1 cut(s)	674
BsaXI	ACNNNNNCTCC	4 cut(s)	418, 448, 833, 863
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 193, 815
Bse3DI	GCAATG	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	750
BseCI	ATCGAT	1 cut(s)	124
BseGI	GGATG	6 cut(s)	211, 778, 784, 802, 825, 1063
BseLI	CCNNNNNNNGG	3 cut(s)	37, 193, 815
BseMI	GCAATG	1 cut(s)	515
BseMII	CTCAG	2 cut(s)	360, 1059
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	937
Bsh1236I	CGCG	3 cut(s)	242, 318, 377
BshFI	GGCC	3 cut(s)	41, 177, 464
BshNI	GGYRCC	1 cut(s)	27
BshVI	ATCGAT	1 cut(s)	124
BsiHKAI	GWGCWC	2 cut(s)	375, 1009
BsiHKCI	CYCGRG	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	675
BslI	CCNNNNNNNGG	3 cut(s)	37, 193, 815
BsmAI	GTCTC	1 cut(s)	755
BsmI	GAATGC	1 cut(s)	653
BsnI	GGCC	3 cut(s)	41, 177, 464
BsoBI	CYCGRG	1 cut(s)	348
Bsp119I	TTCGAA	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	375, 1009
Bsp143I	GATC	4 cut(s)	337, 489, 790, 1072
BspACI	CCGC	7 cut(s)	242, 377, 651, 663, 715, 806, 869
BspANI	GGCC	3 cut(s)	41, 177, 464
BspCNI	CTCAG	2 cut(s)	361, 1060
BspDI	ATCGAT	1 cut(s)	124
BspFNI	CGCG	3 cut(s)	242, 318, 377
BspLI	GGNNCC	2 cut(s)	29, 339
BspPI	GGATC	3 cut(s)	332, 345, 1080
BspT104I	TTCGAA	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	27
BspTI	CTTAAG	1 cut(s)	533
BsrBI	CCGCTC	1 cut(s)	715
BsrDI	GCAATG	1 cut(s)	515
BssMI	GATC	4 cut(s)	337, 489, 790, 1072
BssNI	GRCGYC	1 cut(s)	482
Bst2UI	CCWGG	1 cut(s)	750
Bst6I	CTCTTC	6 cut(s)	70, 192, 198, 266, 351, 425
BstACI	GRCGYC	1 cut(s)	482
BstAFI	CTTAAG	1 cut(s)	533
BstBAI	YACGTR	1 cut(s)	218
BstBI	TTCGAA	1 cut(s)	35
BstC8I	GCNNGC	4 cut(s)	375, 653, 657, 661
BstDEI	CTNAG	4 cut(s)	369, 486, 1068, 1076
BstF5I	GGATG	6 cut(s)	211, 778, 784, 802, 825, 1063
BstFNI	CGCG	3 cut(s)	242, 318, 377
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	4 cut(s)	340, 492, 793, 1075
BstMAI	GTCTC	1 cut(s)	755
BstMBI	GATC	4 cut(s)	337, 489, 790, 1072
BstNI	CCWGG	1 cut(s)	750
BstSCI	CCNGG	1 cut(s)	748
BstUI	CGCG	3 cut(s)	242, 318, 377
BstV1I	GCAGC	1 cut(s)	937
BstV2I	GAAGAC	2 cut(s)	144, 843
BstX2I	RGATCY	2 cut(s)	337, 1072
BstYI	RGATCY	2 cut(s)	337, 1072
Bsu15I	ATCGAT	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	41, 177, 464
BsuTUI	ATCGAT	1 cut(s)	124
BtsCI	GGATG	6 cut(s)	211, 778, 784, 802, 825, 1063
BtsIMutI	CAGTG	1 cut(s)	1084
Cac8I	GCNNGC	4 cut(s)	375, 653, 657, 661
CfoI	GCGC	1 cut(s)	313
ClaI	ATCGAT	1 cut(s)	124
CseI	GACGC	2 cut(s)	248, 471
Csp6I	GTAC	2 cut(s)	28, 544
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	8 cut(s)	41, 177, 421, 464, 599, 629, 655, 1037
CviKI_1	RGCY	8 cut(s)	41, 177, 421, 464, 599, 629, 655, 1037
CviQI	GTAC	2 cut(s)	28, 544
DdeI	CTNAG	4 cut(s)	369, 486, 1068, 1076
DpnI	GATC	4 cut(s)	339, 491, 792, 1074
DpnII	GATC	4 cut(s)	337, 489, 790, 1072
DraIII	CACNNNGTG	1 cut(s)	379
EaeI	YGGCCR	2 cut(s)	175, 462
Eam1104I	CTCTTC	6 cut(s)	70, 192, 198, 266, 351, 425
EarI	CTCTTC	6 cut(s)	70, 192, 198, 266, 351, 425
EciI	GGCGGA	2 cut(s)	795, 884
Eco147I	AGGCCT	1 cut(s)	41
Eco57I	CTGAAG	2 cut(s)	401, 465
Eco72I	CACGTG	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	348
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	1 cut(s)	748
FaeI	CATG	1 cut(s)	13
FatI	CATG	1 cut(s)	9
FauI	CCCGC	2 cut(s)	644, 656
FbaI	TGATCA	1 cut(s)	790
Fnu4HI	GCNGC	1 cut(s)	926
FokI	GGATG	6 cut(s)	198, 785, 791, 809, 832, 1070
Fsp4HI	GCNGC	1 cut(s)	926
FspBI	CTAG	1 cut(s)	588
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	926
HaeIII	GGCC	3 cut(s)	41, 177, 464
HapII	CCGG	1 cut(s)	675
HgaI	GACGC	2 cut(s)	248, 471
HhaI	GCGC	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	482
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HinfI	GANTC	5 cut(s)	293, 671, 755, 872, 994
HpaII	CCGG	1 cut(s)	675
HphI	GGTGA	4 cut(s)	292, 416, 689, 764
Hpy188I	TCNGA	6 cut(s)	231, 342, 445, 478, 760, 984
Hpy188III	TCNNGA	3 cut(s)	794, 998, 1031
Hpy99I	CGWCG	4 cut(s)	20, 146, 149, 194
HpyAV	CCTTC	7 cut(s)	31, 161, 271, 463, 544, 550, 839
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	1 cut(s)	513
HpyF3I	CTNAG	4 cut(s)	369, 486, 1068, 1076
HpySE526I	ACGT	1 cut(s)	217
Hsp92I	GRCGYC	1 cut(s)	482
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	1 cut(s)	311
KpnI	GGTACC	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	4 cut(s)	337, 489, 790, 1072
LmnI	GCTCC	2 cut(s)	208, 712
LpnPI	CCDG	7 cut(s)	54, 499, 688, 735, 762, 779, 1016
Lsp1109I	GCAGC	1 cut(s)	937
LweI	GCATC	3 cut(s)	220, 787, 810
MaeI	CTAG	1 cut(s)	588
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	1 cut(s)	222
MalI	GATC	4 cut(s)	339, 491, 792, 1074
MbiI	CCGCTC	1 cut(s)	715
MboI	GATC	4 cut(s)	337, 489, 790, 1072
MflI	RGATCY	2 cut(s)	337, 1072
MhlI	GDGCHC	2 cut(s)	375, 1009
MluCI	AATT	7 cut(s)	149, 232, 286, 583, 938, 977, 1026
MlyI	GAGTC	1 cut(s)	764
MmeI	TCCRAC	2 cut(s)	504, 954
MroXI	GAANNNNTTC	1 cut(s)	959
MseI	TTAA	3 cut(s)	534, 606, 623
MslI	CAYNNNNRTG	1 cut(s)	216
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	1 cut(s)	675
MspR9I	CCNGG	1 cut(s)	750
Mva1269I	GAATGC	1 cut(s)	653
MvaI	CCWGG	1 cut(s)	750
MvnI	CGCG	3 cut(s)	242, 318, 377
NdeII	GATC	4 cut(s)	337, 489, 790, 1072
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	2 cut(s)	29, 339
NmeAIII	GCCGAG	1 cut(s)	490
NspV	TTCGAA	1 cut(s)	35
PceI	AGGCCT	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 153
PctI	GAATGC	1 cut(s)	653
PdmI	GAANNNNTTC	1 cut(s)	959
PfeI	GAWTC	4 cut(s)	293, 671, 872, 994
PkrI	GCNGC	1 cut(s)	927
PleI	GAGTC	1 cut(s)	763
PmaCI	CACGTG	1 cut(s)	218
PmlI	CACGTG	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	763
Ppu21I	YACGTR	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	748
PspCI	CACGTG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	748
PspN4I	GGNNCC	2 cut(s)	29, 339
PsuI	RGATCY	2 cut(s)	337, 1072
RsaI	GTAC	2 cut(s)	29, 545
RsaNI	GTAC	2 cut(s)	28, 544
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	534, 606, 623
SatI	GCNGC	1 cut(s)	926
Sau3AI	GATC	4 cut(s)	337, 489, 790, 1072
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	1 cut(s)	750
SduI	GDGCHC	2 cut(s)	375, 1009
SetI	ASST	9 cut(s)	29, 220, 282, 399, 413, 423, 443, 474, 1039
SfaNI	GCATC	3 cut(s)	220, 787, 810
SfuI	TTCGAA	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	3 cut(s)	533, 637, 998
SmoI	CTYRAG	3 cut(s)	533, 637, 998
Sse9I	AATT	7 cut(s)	149, 232, 286, 583, 938, 977, 1026
SseBI	AGGCCT	1 cut(s)	41
SsiI	CCGC	7 cut(s)	242, 377, 651, 663, 715, 806, 869
SspI	AATATT	1 cut(s)	104
SspMI	CTAG	1 cut(s)	588
StuI	AGGCCT	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	748
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	3 cut(s)	35, 124, 492
TasI	AATT	7 cut(s)	149, 232, 286, 583, 938, 977, 1026
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	4 cut(s)	293, 671, 872, 994
Tru1I	TTAA	3 cut(s)	534, 606, 623
Tru9I	TTAA	3 cut(s)	534, 606, 623
TscAI	CASTG	1 cut(s)	1084
TseI	GCWGC	1 cut(s)	925
TspDTI	ATGAA	3 cut(s)	180, 707, 1065
TspGWI	ACGGA	1 cut(s)	1070
TspRI	CASTG	1 cut(s)	1084
Vha464I	CTTAAG	1 cut(s)	533
XapI	RAATTY	5 cut(s)	232, 286, 583, 977, 1026
XmnI	GAANNNNTTC	1 cut(s)	959
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.