pycom15g16850
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0003047
Physical Location & Seq
Reverse (-)
11810990 .. 11812624
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g16850.1

Sequence Viewer

Length: 1041 bp
ATGGACGACACAGTAGACGACCCTAGGTACCATCCGAAATCCTACTCTGCAAGCCACCATAACTCCTCTGGTCGCCGTAAAATCCACACCCGAAACACCCAATATGCTCGTCCGGTTCCTAATCGATACGCGGTGGAAGACGACTACGAATTGGACGAGTTGGACGAAGGAAATGGCCGGGAAGACCAATACAATGACGAAGAAGACAAGCACAGGCATGGGTTTAATCGGAATTTTGACGCGGAGGAAGATTTTGAGAGGTTTCCAAAGAAGAGGAAGGCGAAGAATTTGGAATCAAGGTACGAGTTTGCACCTCGGGTGAGGCCGAACTGGGAACCGGGTTTTCGGGCTGAAGAGGAGTGGACGGAGCACTCGGTGTTTATGCTGCTGGAGGTTTGGGGTGATAGGTTTCTTCAGCTGGGGAGGAAGAGTTTGAGGTCTGATGATTGGCATGAGGTAGCATACAAAGTCTCAGAAGCGTCGAAGATTGAGAGGACCGACGGGCAATGTAAGTCGATGTTGGATATGCTTAAGAGGAAGTATAAGAAAGAGAAGGAGAAAATGGAAGAAATGGGGTTGAACTCTAGCAAATGGGCTTACTTTAAGAAGATGGAGATGTTAATGGCATCGTCGTCGAGGCAGGAATTTGGGCTTGCTTGTGGGATTGATTCTGGGGAGTATGTGTTTATGAACACGAGGGTTTATTTGGAGCGGTCGAATGGGTTTGATGAGATGAGGGATAGTCCTGGTGAGTCAGAGACAGATGATGATGAGAATGGGAATGATGATTTCGATGTGTTTCCACCAAGAATGGCAGGGATGCATGGAGGGGACGGGGATGAAGGACATGATCTTAATGTACAGCCTTTGAAACCCAAAATCCCACAAACAATGGCTTTTGTGGTTATGCAGGGGCTCATGCATTGTGTTCTATGGCTTCAGTTATGTTTGAGATGCGTTATTTTTTTGTATTTAAAGAGAAAATTGTTGGTGACCGCCATTAGAATTGATTTAAGAAGAAAAGAAACATTGATTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

347

Amino Acids

40.84

Weight (kDa)

5.67

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 119 - 206 2.6e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 27
AccB1I GGYRCC 1 cut(s) 27
AccBSI CCGCTC 1 cut(s) 712
AccI GTMKAC 1 cut(s) 15
AccII CGCG 2 cut(s) 131, 242
AciI CCGC 4 cut(s) 131, 242, 712, 996
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 3 cut(s) 232, 286, 644
AcuI CTGAAG 3 cut(s) 372, 398, 923
AdeI CACNNNGTG 1 cut(s) 376
AfaI GTAC 3 cut(s) 29, 302, 861
AflII CTTAAG 1 cut(s) 530
AgsI TTSAA 2 cut(s) 580, 871
AjnI CCWGG 1 cut(s) 745
AluBI AGCT 1 cut(s) 418
AluI AGCT 1 cut(s) 418
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 2 cut(s) 475, 752
Ama87I CYCGRG 1 cut(s) 315
AoxI GGCC 2 cut(s) 175, 323
ApeKI GCWGC 1 cut(s) 385
ApoI RAATTY 3 cut(s) 232, 286, 644
Asp718I GGTACC 1 cut(s) 27
AspA2I CCTAGG 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 495
AsuC2I CCSGG 2 cut(s) 179, 339
AsuHPI GGTGA 4 cut(s) 331, 413, 761, 1003
AvaI CYCGRG 1 cut(s) 315
AvaII GGWCC 1 cut(s) 495
AvrII CCTAGG 1 cut(s) 23
BanI GGYRCC 1 cut(s) 27
BanII GRGCYC 1 cut(s) 918
BauI CACGAG 1 cut(s) 694
BbsI GAAGAC 3 cut(s) 144, 189, 210
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 372
BccI CCATC 2 cut(s) 39, 604
BceAI ACGGC 1 cut(s) 60
BcgI CGANNNNNNTGC 2 cut(s) 615, 649
BciT130I CCWGG 1 cut(s) 747
BcnI CCSGG 2 cut(s) 179, 339
BcoDI GTCTC 2 cut(s) 475, 752
BfaI CTAG 2 cut(s) 24, 585
BfrI CTTAAG 1 cut(s) 530
BisI GCNGC 1 cut(s) 386
BlnI CCTAGG 1 cut(s) 23
BlsI GCNGC 1 cut(s) 387
Bme1390I CCNGG 3 cut(s) 179, 339, 747
Bme18I GGWCC 1 cut(s) 495
BmeT110I CYCGRG 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 495
BmiI GGNNCC 3 cut(s) 29, 117, 336
BmrFI CCNGG 3 cut(s) 179, 339, 747
BmrI ACTGGG 1 cut(s) 340
BmsI GCATC 3 cut(s) 635, 810, 944
BmuI ACTGGG 1 cut(s) 340
BpiI GAAGAC 3 cut(s) 144, 189, 210
BpmI CTGGAG 1 cut(s) 410
BpuMI CCSGG 2 cut(s) 179, 339
Bsa29I ATCGAT 1 cut(s) 124
BsaJI CCNNGG 2 cut(s) 23, 314
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 6 cut(s) 47, 77, 415, 445, 668, 698
Bse1I ACTGG 1 cut(s) 335
Bse3DI GCAATG 1 cut(s) 512
BseBI CCWGG 1 cut(s) 747
BseCI ATCGAT 1 cut(s) 124
BseDI CCNNGG 2 cut(s) 23, 314
BseGI GGATG 3 cut(s) 31, 825, 844
BseMI GCAATG 1 cut(s) 512
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 1 cut(s) 335
BseRI GAGGAG 2 cut(s) 55, 371
BseXI GCAGC 1 cut(s) 372
BseYI CCCAGC 1 cut(s) 418
Bsh1236I CGCG 2 cut(s) 131, 242
Bsh1285I CGRYCG 1 cut(s) 716
BshFI GGCC 2 cut(s) 177, 325
BshNI GGYRCC 1 cut(s) 27
BshVI ATCGAT 1 cut(s) 124
BsiEI CGRYCG 1 cut(s) 716
BsiHKAI GWGCWC 1 cut(s) 372
BsiHKCI CYCGRG 1 cut(s) 315
BsiSI CCGG 3 cut(s) 113, 178, 338
BslFI GGGAC 1 cut(s) 845
BsmAI GTCTC 2 cut(s) 475, 752
BsmFI GGGAC 1 cut(s) 845
BsnI GGCC 2 cut(s) 177, 325
BsoBI CYCGRG 1 cut(s) 315
Bsp1286I GDGCHC 2 cut(s) 372, 918
Bsp1407I TGTACA 1 cut(s) 859
Bsp143I GATC 1 cut(s) 850
BspACI CCGC 4 cut(s) 131, 242, 712, 996
BspANI GGCC 2 cut(s) 177, 325
BspCNI CTCAG 1 cut(s) 485
BspDI ATCGAT 1 cut(s) 124
BspFNI CGCG 2 cut(s) 131, 242
BspLI GGNNCC 3 cut(s) 29, 117, 336
BspT107I GGYRCC 1 cut(s) 27
BspTI CTTAAG 1 cut(s) 530
BsrBI CCGCTC 1 cut(s) 712
BsrDI GCAATG 1 cut(s) 512
BsrGI TGTACA 1 cut(s) 859
BsrI ACTGG 1 cut(s) 335
BssECI CCNNGG 2 cut(s) 23, 314
BssMI GATC 1 cut(s) 850
BssSI CACGAG 1 cut(s) 694
BssT1I CCWWGG 1 cut(s) 23
Bst2BI CACGAG 1 cut(s) 694
Bst2UI CCWGG 1 cut(s) 747
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 3 cut(s) 266, 348, 422
BstAFI CTTAAG 1 cut(s) 530
BstAUI TGTACA 1 cut(s) 859
BstC8I GCNNGC 2 cut(s) 52, 654
BstDEI CTNAG 1 cut(s) 472
BstEII GGTNACC 1 cut(s) 991
BstF5I GGATG 3 cut(s) 31, 825, 844
BstFNI CGCG 2 cut(s) 131, 242
BstKTI GATC 1 cut(s) 853
BstMAI GTCTC 2 cut(s) 475, 752
BstMBI GATC 1 cut(s) 850
BstMCI CGRYCG 1 cut(s) 716
BstNI CCWGG 1 cut(s) 747
BstPI GGTNACC 1 cut(s) 991
BstSCI CCNGG 3 cut(s) 177, 337, 745
BstUI CGCG 2 cut(s) 131, 242
BstV1I GCAGC 1 cut(s) 372
BstV2I GAAGAC 3 cut(s) 144, 189, 210
Bsu15I ATCGAT 1 cut(s) 124
BsuRI GGCC 2 cut(s) 177, 325
BsuTUI ATCGAT 1 cut(s) 124
BtsCI GGATG 3 cut(s) 31, 825, 844
Cac8I GCNNGC 2 cut(s) 52, 654
Cfr13I GGNCC 1 cut(s) 495
ClaI ATCGAT 1 cut(s) 124
CseI GACGC 2 cut(s) 248, 468
Csp6I GTAC 3 cut(s) 28, 301, 860
CviAII CATG 5 cut(s) 218, 452, 824, 848, 919
CviQI GTAC 3 cut(s) 28, 301, 860
DdeI CTNAG 1 cut(s) 472
DpnI GATC 1 cut(s) 852
DpnII GATC 1 cut(s) 850
DraI TTTAAA 1 cut(s) 975
DraIII CACNNNGTG 1 cut(s) 376
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 3 cut(s) 266, 348, 422
EarI CTCTTC 3 cut(s) 266, 348, 422
Eco130I CCWWGG 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 918
Eco47I GGWCC 1 cut(s) 495
Eco57I CTGAAG 3 cut(s) 372, 398, 923
Eco88I CYCGRG 1 cut(s) 315
Eco91I GGTNACC 1 cut(s) 991
EcoO65I GGTNACC 1 cut(s) 991
EcoRII CCWGG 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 23
EcoT22I ATGCAT 2 cut(s) 825, 924
EcoT38I GRGCYC 1 cut(s) 918
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 5 cut(s) 221, 455, 827, 851, 922
FaqI GGGAC 1 cut(s) 845
FatI CATG 5 cut(s) 217, 451, 823, 847, 918
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 386
FokI GGATG 3 cut(s) 18, 832, 851
FriOI GRGCYC 1 cut(s) 918
Fsp4HI GCNGC 1 cut(s) 386
FspBI CTAG 2 cut(s) 24, 585
GluI GCNGC 1 cut(s) 386
GsaI CCCAGC 1 cut(s) 422
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 2 cut(s) 177, 325
HapII CCGG 3 cut(s) 113, 178, 338
HgaI GACGC 2 cut(s) 248, 468
Hin1II CATG 5 cut(s) 221, 455, 827, 851, 922
HinfI GANTC 4 cut(s) 293, 668, 752, 1033
HpaII CCGG 3 cut(s) 113, 178, 338
HphI GGTGA 4 cut(s) 331, 413, 761, 1003
Hpy166II GTNNAC 2 cut(s) 16, 363
Hpy188I TCNGA 5 cut(s) 36, 231, 442, 475, 757
Hpy8I GTNNAC 2 cut(s) 16, 363
Hpy99I CGWCG 4 cut(s) 484, 503, 634, 637
HpyAV CCTTC 4 cut(s) 161, 271, 547, 836
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 5 cut(s) 50, 311, 823, 910, 922
HpyF3I CTNAG 1 cut(s) 472
Hsp92II CATG 5 cut(s) 221, 455, 827, 851, 922
KpnI GGTACC 1 cut(s) 31
Kzo9I GATC 1 cut(s) 850
LmnI GCTCC 2 cut(s) 367, 709
Lsp1109I GCAGC 1 cut(s) 372
LweI GCATC 3 cut(s) 635, 810, 944
MaeI CTAG 2 cut(s) 24, 585
MaeIII GTNAC 1 cut(s) 991
MalI GATC 1 cut(s) 852
MbiI CCGCTC 1 cut(s) 712
MboI GATC 1 cut(s) 850
MhlI GDGCHC 2 cut(s) 372, 918
MluCI AATT 6 cut(s) 149, 232, 286, 644, 983, 1005
MlyI GAGTC 1 cut(s) 761
MmeI TCCRAC 2 cut(s) 141, 501
Mph1103I ATGCAT 2 cut(s) 825, 924
MseI TTAA 7 cut(s) 225, 531, 603, 620, 855, 974, 1013
MslI CAYNNNNRTG 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 418
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 3 cut(s) 113, 178, 338
MspR9I CCNGG 3 cut(s) 179, 339, 747
MvaI CCWGG 1 cut(s) 747
MvnI CGCG 2 cut(s) 131, 242
NciI CCSGG 2 cut(s) 179, 339
NdeII GATC 1 cut(s) 850
NlaIII CATG 5 cut(s) 221, 455, 827, 851, 922
NlaIV GGNNCC 3 cut(s) 29, 117, 336
NmuCI GTSAC 1 cut(s) 991
NsiI ATGCAT 2 cut(s) 825, 924
PcsI WCGNNNNNNNCGW 2 cut(s) 153, 162
PfeI GAWTC 3 cut(s) 293, 668, 1033
PkrI GCNGC 1 cut(s) 387
PleI GAGTC 1 cut(s) 760
PpsI GAGTC 1 cut(s) 760
Psp6I CCWGG 1 cut(s) 745
PspEI GGTNACC 1 cut(s) 991
PspFI CCCAGC 1 cut(s) 418
PspGI CCWGG 1 cut(s) 745
PspN4I GGNNCC 3 cut(s) 29, 117, 336
PspPI GGNCC 1 cut(s) 495
PvuII CAGCTG 1 cut(s) 418
RsaI GTAC 3 cut(s) 29, 302, 861
RsaNI GTAC 3 cut(s) 28, 301, 860
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 7 cut(s) 225, 531, 603, 620, 855, 974, 1013
SatI GCNGC 1 cut(s) 386
Sau3AI GATC 1 cut(s) 850
Sau96I GGNCC 1 cut(s) 495
SchI GAGTC 1 cut(s) 761
ScrFI CCNGG 3 cut(s) 179, 339, 747
SduI GDGCHC 2 cut(s) 372, 918
SetI ASST 9 cut(s) 29, 263, 302, 316, 396, 410, 420, 440, 459
SfaNI GCATC 3 cut(s) 635, 810, 944
SinI GGWCC 1 cut(s) 495
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 6 cut(s) 149, 232, 286, 644, 983, 1005
SsiI CCGC 4 cut(s) 131, 242, 712, 996
SspMI CTAG 2 cut(s) 24, 585
StyD4I CCNGG 3 cut(s) 177, 337, 745
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 13
TaqI TCGA 6 cut(s) 124, 482, 515, 635, 716, 792
TaqII GACCGA 1 cut(s) 512
TasI AATT 6 cut(s) 149, 232, 286, 644, 983, 1005
TatI WGTACW 1 cut(s) 859
TfiI GAWTC 3 cut(s) 293, 668, 1033
Tru1I TTAA 7 cut(s) 225, 531, 603, 620, 855, 974, 1013
Tru9I TTAA 7 cut(s) 225, 531, 603, 620, 855, 974, 1013
TseFI GTSAC 1 cut(s) 991
TseI GCWGC 1 cut(s) 385
Tsp45I GTSAC 1 cut(s) 991
TspDTI ATGAA 2 cut(s) 704, 855
TspGWI ACGGA 1 cut(s) 380
Vha464I CTTAAG 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 495
XapI RAATTY 3 cut(s) 232, 286, 644
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
XmaJI CCTAGG 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 2 cut(s) 24, 585
Zsp2I ATGCAT 2 cut(s) 825, 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.