MD15G1188000.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0003047
Physical Location & Seq
Reverse (-)
14813240 .. 14815846
2607 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1188000.v1.1.491

Sequence Viewer

Length: 1086 bp
ATGGACGACATAGTAGACGACCCAAGGTACCATCCGAAATCCTACTCTGCAAGCCACCATGACTCCTCTGATCGCCGTAAAATCGACACCCGAAACACCCAATATGCTCGTCCGGTTCCTAACCGATACGCGGAGGAAGACGACTACGAATTGGACGATTTCGACGAAGGAAATGGCCCGGAAGACCAATACAATGACGAGGAAGACAAGCACAGACATGGGTTTAATCGGAATTTTGACGCGGAGGAAGATTTTGAGAGGCTTCCAAAGAAGAGGAAGGCGAAGAATTTGGAATCAAGGTACGAGTTTGCCCCTCGGGTGAGGCCGAACTGGGAACTGGGTTTTCGGGCTGAAGAGGAGTGGACGGAGCACGCGGTGTTTATGCTGCTGGAGGTTTGGGGCGATAGGTTTCTTCAGCTGGGGAGGAAGAGTTTGAGGTCTGATGATTGGCATGAGGTAGCATACAAAGTCTCAGAGGCGTCGAAGATTGAGAGGACCGACAGGCAGTGTAAGTCGATGTTGGATATGCTTAAGAGGAAGTATAAGAAGGAGAAGGAGAAAATGGAAGAAATGGGGTTGAACTCTAGCAAATGGGCTTACTTTAAGAAGATGGAGATGTTAATGGCATCATCTTCGAGGCAGGAATTTGGGCTTGCTTGTGGGATTGATTCTGGGGAGTATGTGTTTATGAACACGAGGGTTTATTTGGAACGGTCGAATGGGTTTGATGAGATGAGGGATAGTCCTGGTGAGTCAGAGACAGATGATGATGATGAGATTGGGAATGAGGATTTTGATGTGTTTCCACCAAGAATGGCAGGGATGGGTGGAGGGGACGGGGATGAAGGGTCTTCGTATAGAGTGTTGACGGATTCAATTCACAAGTTTGGGGAGATTTATGAGAAGATTGAGAGTAGTAAGAGGCAGCAGATGAGGGAATTGGAGAAGATGAGGAAAATTTTCAACAAGGAGTTGGAGTTGCAGAAGAAGCAGATTCTAGAGAGGGCGCAGGTGGAAATTGCGAAAATTCAGGAGGCAGATGACGATGATGAGACAGATGTTTCTGTTGAGGATCTCAGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

362

Amino Acids

42.66

Weight (kDa)

4.8

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 119 - 206 2.5e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1000
Acc36I ACCTGC 1 cut(s) 1000
Acc65I GGTACC 1 cut(s) 27
AccB1I GGYRCC 1 cut(s) 27
AccI GTMKAC 1 cut(s) 15
AccII CGCG 3 cut(s) 131, 242, 374
AciI CCGC 3 cut(s) 131, 242, 374
AclWI GGATC 1 cut(s) 1080
AcsI RAATTY 5 cut(s) 232, 286, 644, 957, 1026
AcuI CTGAAG 2 cut(s) 372, 398
AcyI GRCGYC 1 cut(s) 479
AdeI CACNNNGTG 1 cut(s) 376
AfaI GTAC 2 cut(s) 29, 302
AfiI CCNNNNNNNGG 1 cut(s) 130
AflII CTTAAG 1 cut(s) 530
AgsI TTSAA 3 cut(s) 580, 876, 964
AjnI CCWGG 1 cut(s) 745
AluBI AGCT 1 cut(s) 418
AluI AGCT 1 cut(s) 418
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 3 cut(s) 475, 752, 1046
AlwI GGATC 1 cut(s) 1080
Ama87I CYCGRG 1 cut(s) 315
AoxI GGCC 2 cut(s) 175, 323
ApeKI GCWGC 2 cut(s) 385, 925
ApoI RAATTY 5 cut(s) 232, 286, 644, 957, 1026
Asp700I GAANNNNTTC 1 cut(s) 959
Asp718I GGTACC 1 cut(s) 27
AspLEI GCGC 1 cut(s) 1009
AspS9I GGNCC 2 cut(s) 176, 495
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 331, 761
AvaI CYCGRG 1 cut(s) 315
AvaII GGWCC 1 cut(s) 495
BanI GGYRCC 1 cut(s) 27
BauI CACGAG 1 cut(s) 694
BbsI GAAGAC 4 cut(s) 144, 189, 210, 843
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 372, 937
BccI CCATC 3 cut(s) 39, 604, 817
BceAI ACGGC 1 cut(s) 60
BcgI CGANNNNNNTGC 2 cut(s) 615, 649
BciT130I CCWGG 1 cut(s) 747
BcnI CCSGG 1 cut(s) 179
BcoDI GTCTC 3 cut(s) 475, 752, 1046
BfaI CTAG 2 cut(s) 585, 998
BfrI CTTAAG 1 cut(s) 530
BfuAI ACCTGC 1 cut(s) 1000
BisI GCNGC 2 cut(s) 386, 926
BlsI GCNGC 2 cut(s) 387, 927
Bme1390I CCNGG 2 cut(s) 179, 747
Bme18I GGWCC 1 cut(s) 495
BmeT110I CYCGRG 1 cut(s) 315
BmgT120I GGNCC 2 cut(s) 176, 495
BmiI GGNNCC 2 cut(s) 29, 117
BmrFI CCNGG 2 cut(s) 179, 747
BmrI ACTGGG 2 cut(s) 340, 347
BmsI GCATC 1 cut(s) 635
BmuI ACTGGG 2 cut(s) 340, 347
BpiI GAAGAC 4 cut(s) 144, 189, 210, 843
BpmI CTGGAG 1 cut(s) 410
BpuMI CCSGG 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 479
BsaJI CCNNGG 2 cut(s) 23, 314
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 8 cut(s) 47, 77, 415, 445, 668, 698, 962, 992
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 2 cut(s) 335, 342
BseBI CCWGG 1 cut(s) 747
BseDI CCNNGG 2 cut(s) 23, 314
BseGI GGATG 3 cut(s) 31, 828, 847
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 2 cut(s) 335, 342
BseRI GAGGAG 2 cut(s) 55, 371
BseXI GCAGC 2 cut(s) 372, 937
BseYI CCCAGC 1 cut(s) 418
Bsh1236I CGCG 3 cut(s) 131, 242, 374
Bsh1285I CGRYCG 1 cut(s) 716
BshFI GGCC 2 cut(s) 177, 325
BshNI GGYRCC 1 cut(s) 27
BsiEI CGRYCG 1 cut(s) 716
BsiHKAI GWGCWC 1 cut(s) 372
BsiHKCI CYCGRG 1 cut(s) 315
BsiSI CCGG 2 cut(s) 113, 179
BslFI GGGAC 1 cut(s) 848
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 3 cut(s) 475, 752, 1046
BsmFI GGGAC 1 cut(s) 848
BsnI GGCC 2 cut(s) 177, 325
BsoBI CYCGRG 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 2 cut(s) 70, 1072
BspACI CCGC 3 cut(s) 131, 242, 374
BspANI GGCC 2 cut(s) 177, 325
BspCNI CTCAG 1 cut(s) 485
BspFNI CGCG 3 cut(s) 131, 242, 374
BspLI GGNNCC 2 cut(s) 29, 117
BspMI ACCTGC 1 cut(s) 1000
BspPI GGATC 1 cut(s) 1080
BspT107I GGYRCC 1 cut(s) 27
BspTI CTTAAG 1 cut(s) 530
BsrI ACTGG 2 cut(s) 335, 342
BssECI CCNNGG 2 cut(s) 23, 314
BssMI GATC 2 cut(s) 70, 1072
BssNI GRCGYC 1 cut(s) 479
BssSI CACGAG 1 cut(s) 694
BssT1I CCWWGG 1 cut(s) 23
Bst2BI CACGAG 1 cut(s) 694
Bst2UI CCWGG 1 cut(s) 747
Bst4CI ACNGT 1 cut(s) 714
Bst6I CTCTTC 3 cut(s) 266, 348, 422
BstACI GRCGYC 1 cut(s) 479
BstAFI CTTAAG 1 cut(s) 530
BstC8I GCNNGC 3 cut(s) 52, 372, 654
BstDEI CTNAG 2 cut(s) 472, 1076
BstF5I GGATG 3 cut(s) 31, 828, 847
BstFNI CGCG 3 cut(s) 131, 242, 374
BstHHI GCGC 1 cut(s) 1009
BstKTI GATC 2 cut(s) 73, 1075
BstMAI GTCTC 3 cut(s) 475, 752, 1046
BstMBI GATC 2 cut(s) 70, 1072
BstMCI CGRYCG 1 cut(s) 716
BstMWI GCNNNNNNNGC 1 cut(s) 988
BstNI CCWGG 1 cut(s) 747
BstSCI CCNGG 2 cut(s) 177, 745
BstUI CGCG 3 cut(s) 131, 242, 374
BstV1I GCAGC 2 cut(s) 372, 937
BstV2I GAAGAC 4 cut(s) 144, 189, 210, 843
BstX2I RGATCY 1 cut(s) 1072
BstYI RGATCY 1 cut(s) 1072
BsuRI GGCC 2 cut(s) 177, 325
BtsCI GGATG 3 cut(s) 31, 828, 847
BtsI GCAGTG 1 cut(s) 512
BtsIMutI CAGTG 2 cut(s) 512, 1084
BveI ACCTGC 1 cut(s) 1000
Cac8I GCNNGC 3 cut(s) 52, 372, 654
CfoI GCGC 1 cut(s) 1009
Cfr13I GGNCC 2 cut(s) 176, 495
CseI GACGC 2 cut(s) 248, 468
Csp6I GTAC 2 cut(s) 28, 301
CviAII CATG 3 cut(s) 59, 218, 452
CviJI RGCY 8 cut(s) 54, 177, 262, 325, 350, 418, 596, 652
CviKI_1 RGCY 8 cut(s) 54, 177, 262, 325, 350, 418, 596, 652
CviQI GTAC 2 cut(s) 28, 301
DdeI CTNAG 2 cut(s) 472, 1076
DpnI GATC 2 cut(s) 72, 1074
DpnII GATC 2 cut(s) 70, 1072
DraIII CACNNNGTG 1 cut(s) 376
Eam1104I CTCTTC 3 cut(s) 266, 348, 422
EarI CTCTTC 3 cut(s) 266, 348, 422
Eco130I CCWWGG 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 495
Eco57I CTGAAG 2 cut(s) 372, 398
Eco88I CYCGRG 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 3 cut(s) 62, 221, 455
FaqI GGGAC 1 cut(s) 848
FatI CATG 3 cut(s) 58, 217, 451
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 386, 926
FokI GGATG 3 cut(s) 18, 835, 854
Fsp4HI GCNGC 2 cut(s) 386, 926
FspBI CTAG 2 cut(s) 585, 998
GlaI GCGC 1 cut(s) 1008
GluI GCNGC 2 cut(s) 386, 926
GsaI CCCAGC 1 cut(s) 422
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 2 cut(s) 177, 325
HapII CCGG 2 cut(s) 113, 179
HgaI GACGC 2 cut(s) 248, 468
HhaI GCGC 1 cut(s) 1009
Hin1I GRCGYC 1 cut(s) 479
Hin1II CATG 3 cut(s) 62, 221, 455
Hin6I GCGC 1 cut(s) 1007
HinP1I GCGC 1 cut(s) 1007
HincII GTYRAC 1 cut(s) 867
HindII GTYRAC 1 cut(s) 867
HinfI GANTC 6 cut(s) 62, 293, 668, 752, 872, 994
HpaII CCGG 2 cut(s) 113, 179
HphI GGTGA 2 cut(s) 331, 761
Hpy166II GTNNAC 3 cut(s) 16, 363, 867
Hpy188I TCNGA 6 cut(s) 36, 70, 231, 442, 475, 757
Hpy188III TCNNGA 2 cut(s) 998, 1031
Hpy8I GTNNAC 3 cut(s) 16, 363, 867
Hpy99I CGWCG 2 cut(s) 167, 484
HpyAV CCTTC 5 cut(s) 161, 271, 541, 547, 839
HpyCH4III ACNGT 1 cut(s) 714
HpyCH4V TGCA 2 cut(s) 50, 982
HpyF10VI GCNNNNNNNGC 1 cut(s) 988
HpyF3I CTNAG 2 cut(s) 472, 1076
Hsp92I GRCGYC 1 cut(s) 479
Hsp92II CATG 3 cut(s) 62, 221, 455
HspAI GCGC 1 cut(s) 1007
KpnI GGTACC 1 cut(s) 31
Kzo9I GATC 2 cut(s) 70, 1072
LmnI GCTCC 1 cut(s) 367
Lsp1109I GCAGC 2 cut(s) 372, 937
LweI GCATC 1 cut(s) 635
MaeI CTAG 2 cut(s) 585, 998
MalI GATC 2 cut(s) 72, 1074
MboI GATC 2 cut(s) 70, 1072
MflI RGATCY 1 cut(s) 1072
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 9 cut(s) 149, 232, 286, 644, 876, 938, 957, 1017, 1026
MlyI GAGTC 2 cut(s) 56, 761
MmeI TCCRAC 2 cut(s) 501, 954
MroXI GAANNNNTTC 1 cut(s) 959
MseI TTAA 4 cut(s) 225, 531, 603, 620
MslI CAYNNNNRTG 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 418
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 2 cut(s) 113, 179
MspR9I CCNGG 2 cut(s) 179, 747
MvaI CCWGG 1 cut(s) 747
MvnI CGCG 3 cut(s) 131, 242, 374
MwoI GCNNNNNNNGC 1 cut(s) 988
NciI CCSGG 1 cut(s) 179
NdeII GATC 2 cut(s) 70, 1072
NlaIII CATG 3 cut(s) 62, 221, 455
NlaIV GGNNCC 2 cut(s) 29, 117
PaqCI CACCTGC 1 cut(s) 1000
PcsI WCGNNNNNNNCGW 2 cut(s) 153, 162
PdmI GAANNNNTTC 1 cut(s) 959
PfeI GAWTC 4 cut(s) 293, 668, 872, 994
PkrI GCNGC 2 cut(s) 387, 927
PleI GAGTC 2 cut(s) 56, 760
PpsI GAGTC 2 cut(s) 56, 760
Psp6I CCWGG 1 cut(s) 745
PspFI CCCAGC 1 cut(s) 418
PspGI CCWGG 1 cut(s) 745
PspN4I GGNNCC 2 cut(s) 29, 117
PspPI GGNCC 2 cut(s) 176, 495
PsuI RGATCY 1 cut(s) 1072
PvuII CAGCTG 1 cut(s) 418
RsaI GTAC 2 cut(s) 29, 302
RsaNI GTAC 2 cut(s) 28, 301
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 4 cut(s) 225, 531, 603, 620
SatI GCNGC 2 cut(s) 386, 926
Sau3AI GATC 2 cut(s) 70, 1072
Sau96I GGNCC 2 cut(s) 176, 495
SchI GAGTC 2 cut(s) 56, 761
ScrFI CCNGG 2 cut(s) 179, 747
SduI GDGCHC 1 cut(s) 372
SetI ASST 8 cut(s) 29, 302, 396, 410, 420, 440, 459, 1014
SfaNI GCATC 1 cut(s) 635
SinI GGWCC 1 cut(s) 495
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 9 cut(s) 149, 232, 286, 644, 876, 938, 957, 1017, 1026
SsiI CCGC 3 cut(s) 131, 242, 374
SspMI CTAG 2 cut(s) 585, 998
StyD4I CCNGG 2 cut(s) 177, 745
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 714
TaqI TCGA 6 cut(s) 84, 162, 482, 515, 635, 716
TaqII GACCGA 1 cut(s) 512
TasI AATT 9 cut(s) 149, 232, 286, 644, 876, 938, 957, 1017, 1026
TfiI GAWTC 4 cut(s) 293, 668, 872, 994
Tru1I TTAA 4 cut(s) 225, 531, 603, 620
Tru9I TTAA 4 cut(s) 225, 531, 603, 620
TscAI CASTG 2 cut(s) 512, 1084
TseI GCWGC 2 cut(s) 385, 925
TspDTI ATGAA 2 cut(s) 704, 858
TspGWI ACGGA 2 cut(s) 380, 884
TspRI CASTG 2 cut(s) 512, 1084
Vha464I CTTAAG 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 495
XapI RAATTY 5 cut(s) 232, 286, 644, 957, 1026
XbaI TCTAGA 1 cut(s) 997
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 959
XspI CTAG 2 cut(s) 585, 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.