Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003047

Physical Location & Seq

Genomic Coordinates Reverse (-)

5132675 .. 5134955

Gene Structure 2281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G071500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGATGACACCGAAGATGATGCAAAGGTATCCTCCAAACCCATATGGTGTGAATCACCAGCAGGGTTATGGTTCTTCTCCAAAGGCAGAAACCTTCCTGTTCGTAGTGGTCCATATTCTAGGCCAGTTGGCAGTCACTATGTTGATGATGAAGAGGACGATGAGGATGAAGAGGATGAAGAGTTGGGTGAGGAAGAAGAAGACAACAATGGTCAAAATGGTTATCCTTCTGTTCACAAAGATGTTGACGATGATGATGATGACGAAGATGATGGTGATGATGAGGAGGATGAGGAGGATGAAGATGATAATAAGAGCAAAGTTTATAATAGAATGATTGATGATGCTGATTTAAAAAAGCACCCAAAGAAGCGGAAGTTGAAGAATTTGATCTCAAGTTATGAATTTGCTCCTCGTCTACCAGCTCCTCCAGCTGCTGCACCCTCTGCTCCAAGACAATCAATTGGTGGCCGGAATTCGCTTACCGATTGGACCGAGCATGAGACATTTGTGTTACTAGATGCTTGGGGTGATCGGTTTCTTCAACGTGGAAAAAAGAGTCTTCGCTCTGAGGAGTGGCAAGAGGTAGCGGAGAAGGTTTCAGAGGTGTCAAAGATTGAAAGGACAGACACACAATGTCGCAATCGGTTGGATACCTTGAAGAAGAAGTACAAAAAGGAGAGGCTCAAATTCGCAGAGACTGGTGGTGCTACTAGCAAGTGGGTTTATTTCAAGAAGATGGATATGTTAATGTCATCGCCACAACAGCAATCTGGCCTCTCTTGTGGTTTGGACTCTGGGGAGTATGTTTTCATGAACCCTAGAGTGTATTTGAACCGTGCAAATGGGTTGGATGAGATGAGGGATAGTCCAGGAAATTCAGAATCTGCTGAGGGAGTGGATGATGATTCAGATGGGCTACCACCCAAGAAGAGAAGGTACGGAAGGGACAATGATGATCGGTGTTCCTTTAGATTGCTTGCTGATTCTATTCAGAAATTCAGTGACATATATGAGAAGATTGAAACTAGTAAAAGGCAGCAGATGGTAGAACTAGAGAAGATGAGGATGGATTTCCACAGGGACTTGGAAATGCAGAAAAGGCAGATTATGGAGAGAGCGCAGGCAGAGATTGCAAAAATACAGCAGGGTGATGACGAGGAGAATGATATCTCAGCCGAAAATGCTAGTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

399

Amino Acids

45.72

Weight (kDa)

4.59

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24490
fragaria_vesca	FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_6g31095 FvH4_6g31095
malus_domestica	MD09G1212700.v1.1 MD15G1188000.v1.1 MD17G1195600.v1.1
prunus_persica	Prupe.3G071500_v2.0.a1 Prupe.3G071500_v2.0.a1 Prupe.7G228600_v2.0.a1
pyrus_communis	pycom09g13040 pycom15g16850 pycom17g20120
rosa_chinensis	RchiOBHm_Chr2g0090791 RchiOBHm_Chr2g0137821
rosa_laevigata	RLG00000016143 RLG00000019678
rosa_multiflora	Rmu_sc0002170.1_g000002 Rmu_ssc0000367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106790 Rroxscaffold_2G00150820
rosa_rugosa	Rorug02G0010500 Rorug02G0346200 Rorug02G0346300
rosa_samantha	Rh2AG056500 Rh2AG393000 Rh2BG055200 Rh2BG400700 Rh2CG057600 Rh2CG379700 Rh2DG056200 Rh2DG415600
rosa_wichuraiana	Rw2G004600 Rw2G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	418
AciI	CCGC	2 cut(s)	373, 590
AcoI	YGGCCR	1 cut(s)	469
AcsI	RAATTY	6 cut(s)	385, 404, 475, 689, 877, 998
AfaI	GTAC	2 cut(s)	671, 941
AgsI	TTSAA	7 cut(s)	382, 545, 620, 661, 733, 835, 1025
AhlI	ACTAGT	1 cut(s)	1028
AjnI	CCWGG	1 cut(s)	871
AluBI	AGCT	2 cut(s)	425, 434
AluI	AGCT	2 cut(s)	425, 434
Alw26I	GTCTC	2 cut(s)	497, 692
AlwNI	CAGNNNCTG	3 cut(s)	437, 701, 887
AoxI	GGCC	3 cut(s)	122, 469, 775
ApeKI	GCWGC	3 cut(s)	434, 437, 1039
ApoI	RAATTY	6 cut(s)	385, 404, 475, 689, 877, 998
AspLEI	GCGC	1 cut(s)	1123
AspS9I	GGNCC	2 cut(s)	110, 492
AsuHPI	GGTGA	5 cut(s)	48, 200, 287, 542, 1163
AvaII	GGWCC	2 cut(s)	110, 492
BarI	GAAGNNNNNNTAC	4 cut(s)	653, 685, 923, 955
BbsI	GAAGAC	2 cut(s)	207, 554
BbvCI	CCTCAGC	1 cut(s)	891
BbvI	GCAGC	3 cut(s)	421, 424, 1051
BccI	CCATC	5 cut(s)	266, 733, 908, 1039, 1063
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciT130I	CCWGG	1 cut(s)	873
BciVI	GTATCC	2 cut(s)	40, 646
BcoDI	GTCTC	2 cut(s)	497, 692
BcuI	ACTAGT	1 cut(s)	1028
BfaI	CTAG	7 cut(s)	120, 518, 714, 822, 1029, 1055, 1188
BfuI	GTATCC	2 cut(s)	40, 646
BisI	GCNGC	3 cut(s)	435, 438, 1040
BlsI	GCNGC	3 cut(s)	436, 439, 1041
Bme1390I	CCNGG	1 cut(s)	873
Bme18I	GGWCC	2 cut(s)	110, 492
BmgT120I	GGNCC	2 cut(s)	110, 492
BmrFI	CCNGG	1 cut(s)	873
BmsI	GCATC	3 cut(s)	10, 334, 511
BpiI	GAAGAC	2 cut(s)	207, 554
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	891
BpuEI	CTTGAG	1 cut(s)	379
Bse1I	ACTGG	2 cut(s)	125, 706
BseBI	CCWGG	1 cut(s)	873
BseGI	GGATG	8 cut(s)	10, 172, 181, 295, 304, 859, 907, 1074
BseMII	CTCAG	3 cut(s)	561, 882, 1188
BseNI	ACTGG	2 cut(s)	125, 706
BseRI	GAGGAG	6 cut(s)	299, 308, 402, 417, 587, 1175
BseXI	GCAGC	3 cut(s)	421, 424, 1051
BsgI	GTGCAG	1 cut(s)	423
BshFI	GGCC	3 cut(s)	124, 471, 777
BsiSI	CCGG	1 cut(s)	472
BslFI	GGGAC	2 cut(s)	962, 1097
BsmAI	GTCTC	2 cut(s)	497, 692
BsmFI	GGGAC	2 cut(s)	962, 1097
BsnI	GGCC	3 cut(s)	124, 471, 777
Bsp143I	GATC	3 cut(s)	390, 532, 958
BspACI	CCGC	2 cut(s)	373, 590
BspANI	GGCC	3 cut(s)	124, 471, 777
BspCNI	CTCAG	3 cut(s)	562, 883, 1187
BspHI	TCATGA	1 cut(s)	813
BsrI	ACTGG	2 cut(s)	125, 706
BssMI	GATC	3 cut(s)	390, 532, 958
Bst2UI	CCWGG	1 cut(s)	873
Bst4CI	ACNGT	1 cut(s)	839
Bst6I	CTCTTC	4 cut(s)	147, 165, 174, 926
BstAPI	GCANNNNNTGC	2 cut(s)	446, 1133
BstC8I	GCNNGC	2 cut(s)	981, 1125
BstDEI	CTNAG	3 cut(s)	570, 891, 1174
BstF5I	GGATG	8 cut(s)	10, 172, 181, 295, 304, 859, 907, 1074
BstHHI	GCGC	1 cut(s)	1123
BstKTI	GATC	3 cut(s)	393, 535, 961
BstMAI	GTCTC	2 cut(s)	497, 692
BstMBI	GATC	3 cut(s)	390, 532, 958
BstMWI	GCNNNNNNNGC	6 cut(s)	431, 446, 766, 1102, 1133, 1184
BstNI	CCWGG	1 cut(s)	873
BstSCI	CCNGG	1 cut(s)	871
BstV1I	GCAGC	3 cut(s)	421, 424, 1051
BstV2I	GAAGAC	2 cut(s)	207, 554
BsuI	GTATCC	2 cut(s)	40, 646
BsuRI	GGCC	3 cut(s)	124, 471, 777
BtgZI	GCGATG	1 cut(s)	741
BtsCI	GGATG	8 cut(s)	10, 172, 181, 295, 304, 859, 907, 1074
BtsIMutI	CAGTG	1 cut(s)	1009
Cac8I	GCNNGC	2 cut(s)	981, 1125
CaiI	CAGNNNCTG	3 cut(s)	437, 701, 887
CciI	TCATGA	1 cut(s)	813
CfoI	GCGC	1 cut(s)	1123
Cfr13I	GGNCC	2 cut(s)	110, 492
Csp6I	GTAC	2 cut(s)	670, 940
CviAII	CATG	2 cut(s)	500, 814
CviJI	RGCY	8 cut(s)	124, 425, 434, 471, 685, 777, 919, 1178
CviKI_1	RGCY	8 cut(s)	124, 425, 434, 471, 685, 777, 919, 1178
CviQI	GTAC	2 cut(s)	670, 940
DdeI	CTNAG	3 cut(s)	570, 891, 1174
DpnI	GATC	3 cut(s)	392, 534, 960
DpnII	GATC	3 cut(s)	390, 532, 958
DraI	TTTAAA	1 cut(s)	354
EaeI	YGGCCR	1 cut(s)	469
Eam1104I	CTCTTC	4 cut(s)	147, 165, 174, 926
EarI	CTCTTC	4 cut(s)	147, 165, 174, 926
Eco32I	GATATC	1 cut(s)	1171
Eco47I	GGWCC	2 cut(s)	110, 492
EcoRI	GAATTC	1 cut(s)	475
EcoRII	CCWGG	1 cut(s)	871
EcoRV	GATATC	1 cut(s)	1171
FaeI	CATG	2 cut(s)	503, 817
FaqI	GGGAC	2 cut(s)	962, 1097
FatI	CATG	2 cut(s)	499, 813
FauNDI	CATATG	1 cut(s)	44
FblI	GTMKAC	1 cut(s)	418
Fnu4HI	GCNGC	3 cut(s)	435, 438, 1040
FokI	GGATG	8 cut(s)	17, 179, 188, 302, 311, 866, 914, 1081
Fsp4HI	GCNGC	3 cut(s)	435, 438, 1040
FspBI	CTAG	7 cut(s)	120, 518, 714, 822, 1029, 1055, 1188
GlaI	GCGC	1 cut(s)	1122
GluI	GCNGC	3 cut(s)	435, 438, 1040
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	3 cut(s)	124, 471, 777
HapII	CCGG	1 cut(s)	472
HhaI	GCGC	1 cut(s)	1123
Hin1II	CATG	2 cut(s)	503, 817
Hin6I	GCGC	1 cut(s)	1121
HinP1I	GCGC	1 cut(s)	1121
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	6 cut(s)	53, 559, 794, 884, 908, 986
HpaII	CCGG	1 cut(s)	472
HphI	GGTGA	5 cut(s)	48, 200, 287, 542, 1163
Hpy166II	GTNNAC	3 cut(s)	235, 247, 419
Hpy188I	TCNGA	5 cut(s)	571, 604, 883, 913, 996
Hpy188III	TCNNGA	2 cut(s)	733, 814
Hpy8I	GTNNAC	3 cut(s)	235, 247, 419
HpyAV	CCTTC	5 cut(s)	104, 237, 589, 930, 939
HpyCH4III	ACNGT	1 cut(s)	839
HpyCH4IV	ACGT	1 cut(s)	547
HpyCH4V	TGCA	5 cut(s)	23, 440, 842, 1096, 1136
HpyF10VI	GCNNNNNNNGC	6 cut(s)	431, 446, 766, 1102, 1133, 1184
HpyF3I	CTNAG	3 cut(s)	570, 891, 1174
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	2 cut(s)	503, 817
HspAI	GCGC	1 cut(s)	1121
Kzo9I	GATC	3 cut(s)	390, 532, 958
LmnI	GCTCC	3 cut(s)	415, 430, 454
Lsp1109I	GCAGC	3 cut(s)	421, 424, 1051
LweI	GCATC	3 cut(s)	10, 334, 511
MaeI	CTAG	7 cut(s)	120, 518, 714, 822, 1029, 1055, 1188
MaeII	ACGT	1 cut(s)	547
MaeIII	GTNAC	3 cut(s)	134, 513, 1004
MalI	GATC	3 cut(s)	392, 534, 960
MboI	GATC	3 cut(s)	390, 532, 958
MfeI	CAATTG	1 cut(s)	462
MluCI	AATT	7 cut(s)	385, 404, 462, 475, 689, 877, 998
MlyI	GAGTC	2 cut(s)	568, 788
MmeI	TCCRAC	2 cut(s)	630, 831
MseI	TTAA	2 cut(s)	353, 749
MslI	CAYNNNNRTG	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	1 cut(s)	472
MspR9I	CCNGG	1 cut(s)	873
MunI	CAATTG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	873
MwoI	GCNNNNNNNGC	6 cut(s)	431, 446, 766, 1102, 1133, 1184
NdeI	CATATG	1 cut(s)	44
NdeII	GATC	3 cut(s)	390, 532, 958
NlaIII	CATG	2 cut(s)	503, 817
NmuCI	GTSAC	2 cut(s)	134, 1004
PagI	TCATGA	1 cut(s)	813
PfeI	GAWTC	4 cut(s)	53, 884, 908, 986
PfoI	TCCNGGA	1 cut(s)	871
PkrI	GCNGC	3 cut(s)	436, 439, 1041
PleI	GAGTC	2 cut(s)	567, 788
PpsI	GAGTC	2 cut(s)	567, 788
PsiI	TTATAA	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	871
PspGI	CCWGG	1 cut(s)	871
PspPI	GGNCC	2 cut(s)	110, 492
PstNI	CAGNNNCTG	3 cut(s)	437, 701, 887
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	2 cut(s)	671, 941
RsaNI	GTAC	2 cut(s)	670, 940
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	353, 749
SatI	GCNGC	3 cut(s)	435, 438, 1040
Sau3AI	GATC	3 cut(s)	390, 532, 958
Sau96I	GGNCC	2 cut(s)	110, 492
SchI	GAGTC	2 cut(s)	568, 788
ScrFI	CCNGG	1 cut(s)	873
SfaNI	GCATC	3 cut(s)	10, 334, 511
SinI	GGWCC	2 cut(s)	110, 492
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
SpeI	ACTAGT	1 cut(s)	1028
Sse9I	AATT	7 cut(s)	385, 404, 462, 475, 689, 877, 998
SsiI	CCGC	2 cut(s)	373, 590
SspMI	CTAG	7 cut(s)	120, 518, 714, 822, 1029, 1055, 1188
StyD4I	CCNGG	1 cut(s)	871
TaaI	ACNGT	1 cut(s)	839
TaiI	ACGT	1 cut(s)	550
TaqII	GACCGA	1 cut(s)	509
TasI	AATT	7 cut(s)	385, 404, 462, 475, 689, 877, 998
TatI	WGTACW	1 cut(s)	669
TfiI	GAWTC	4 cut(s)	53, 884, 908, 986
Tru1I	TTAA	2 cut(s)	353, 749
Tru9I	TTAA	2 cut(s)	353, 749
TscAI	CASTG	1 cut(s)	1009
TseFI	GTSAC	2 cut(s)	134, 1004
TseI	GCWGC	3 cut(s)	434, 437, 1039
Tsp45I	GTSAC	2 cut(s)	134, 1004
TspDTI	ATGAA	7 cut(s)	165, 183, 192, 315, 417, 802, 830
TspGWI	ACGGA	1 cut(s)	957
TspRI	CASTG	1 cut(s)	1009
VpaK11BI	GGWCC	2 cut(s)	110, 492
XapI	RAATTY	6 cut(s)	385, 404, 475, 689, 877, 998
XcmI	CCANNNNNNNNNTGG	1 cut(s)	66
XmiI	GTMKAC	1 cut(s)	418
XspI	CTAG	7 cut(s)	120, 518, 714, 822, 1029, 1055, 1188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.