Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003047

Physical Location & Seq

Genomic Coordinates Forward (+)

53051715 .. 53052898

Gene Structure 1184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G032200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGATGACACTGAAGATGATGCAAGGTATCCTCCGAATGTATATGGTGCGAATCACCCACAGGGCTATGATTCTGCACAGCCCCCGAAGCTACCTGCTCGAAGTGGTTCATTTTCTAGGCCAGTTAGTCATTATGATGACGATGAGGATGATGAGGATGAGGAGGATGAGGAGTTGGGTGAGGAAGAAGGCCACAATGGTCAAAATGGTTATCCTTCTGTTCATAAAGATGTTGGGGATGATGACGATGACGATGATGAGGAGGGTGATGATGATGAGGATGAGGATGACGAAGAAGATGATAAGAGCAAAGTCTTTAAGAGGATTGACGATGATGATTTGCAAAAGCACCCAAAGAAGCGCAAGTTGAAGAGTTTGATTTCAAGTTATGAATTTGCTCCCGTACAATCACATGGTGGCCGGAATGCACTTACGGATTGGACTGAGCATGAGACATTTGTTTTACTAGATGCTTGGGGTGACCGGTTTCTTCGGCGTGGGAAAAAGAGTCTTCGCTCTGAGGAGTGGCAAGAGGTTGCAGAGAAGGTGTCAGAGGTGTCAAAGATTGAAAGGACAGACACTCAGTGTCGTAATCGATTGGATACCCTGAAGAAGAAGTACAAAAAGGAGAGGCTCAAATTTGCAGAGACTGGAGGTGCTACTAGCAAGTGGGTATATTTCAAGAAGATGGACATGTTAATGTCATCACCACAACAGCAGGCTGGTCTCTCTTGTGGTTTGGACTCAGGAGAGTATGTTTTCATGAACCCTAGAGTGTATTTGAACCGTGCAAACGGGTTAGATGAGATGAGGGATAGTCCAGGGAATTCAGAATCTGCTGAGGGAGTGGAGGATGAGTCGGATGGGCTACCACCCAAGAAAAGAAGGTTTGGAAGGGACAATGATGAGCGATCTTCCTTTAGATTGCTTGCTGATTCTATTCAGAAATTCAGTGACATATATGAGAAGATTGAAAAAAGTAAAAGGCAGCAGATGGTAGAGCTAGAGAAGATGAGGATGGATTTCCATAGGGATTTGGAAATGCAGAAAAGGCAGATTATGGAGAGAGCACAGGCTGAAATTGCGAAAATGCGGCAGGCTGATGATGAGGAGAATGATGTGTCTGCTGAAAATGCTAGTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

381

Amino Acids

43.95

Weight (kDa)

4.63

Isoelectric Point (pI)

55.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	146 - 233	4.1e-19	Myb/SANT-like DNA-binding domain
MADF_DNA_bdg	PF10545	168 - 231	2.3e-06	Alcohol dehydrogenase transcription factor Myb/SANT-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24490
fragaria_vesca	FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_6g31095 FvH4_6g31095
malus_domestica	MD09G1212700.v1.1 MD15G1188000.v1.1 MD17G1195600.v1.1
prunus_persica	Prupe.3G071500_v2.0.a1 Prupe.3G071500_v2.0.a1 Prupe.7G228600_v2.0.a1
pyrus_communis	pycom09g13040 pycom15g16850 pycom17g20120
rosa_chinensis	RchiOBHm_Chr2g0090791 RchiOBHm_Chr2g0137821
rosa_laevigata	RLG00000016143 RLG00000019678
rosa_multiflora	Rmu_sc0002170.1_g000002 Rmu_ssc0000367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106790 Rroxscaffold_2G00150820
rosa_rugosa	Rorug02G0010500 Rorug02G0346200 Rorug02G0346300
rosa_samantha	Rh2AG056500 Rh2AG393000 Rh2BG055200 Rh2BG400700 Rh2CG057600 Rh2CG379700 Rh2DG056200 Rh2DG415600
rosa_wichuraiana	Rw2G004600 Rw2G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	103
AciI	CCGC	1 cut(s)	1093
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	4 cut(s)	392, 638, 826, 947
AcuI	CTGAAG	2 cut(s)	33, 629
AdeI	CACNNNGTG	2 cut(s)	416, 585
AfaI	GTAC	2 cut(s)	405, 620
AflIII	ACRYGT	1 cut(s)	693
AgeI	ACCGGT	1 cut(s)	483
AgsI	TTSAA	6 cut(s)	370, 384, 569, 682, 784, 974
AjnI	CCWGG	1 cut(s)	820
AluBI	AGCT	2 cut(s)	91, 1003
AluI	AGCT	2 cut(s)	91, 1003
Alw21I	GWGCWC	1 cut(s)	1072
Alw26I	GTCTC	3 cut(s)	446, 641, 731
AlwNI	CAGNNNCTG	2 cut(s)	650, 836
AoxI	GGCC	3 cut(s)	119, 190, 418
ApeKI	GCWGC	1 cut(s)	988
ApoI	RAATTY	4 cut(s)	392, 638, 826, 947
AsiGI	ACCGGT	1 cut(s)	483
Asp700I	GAANNNNTTC	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	363
AsuHPI	GGTGA	5 cut(s)	47, 191, 278, 491, 699
BarI	GAAGNNNNNNTAC	2 cut(s)	602, 634
BbsI	GAAGAC	1 cut(s)	503
Bbv12I	GWGCWC	1 cut(s)	1072
BbvCI	CCTCAGC	1 cut(s)	840
BbvI	GCAGC	1 cut(s)	1000
BccI	CCATC	4 cut(s)	682, 857, 988, 1012
BciT130I	CCWGG	1 cut(s)	822
BciVI	GTATCC	2 cut(s)	39, 595
BcoDI	GTCTC	3 cut(s)	446, 641, 731
BfaI	CTAG	6 cut(s)	117, 467, 663, 771, 1004, 1137
BfuAI	ACCTGC	1 cut(s)	103
BfuI	GTATCC	2 cut(s)	39, 595
BisI	GCNGC	2 cut(s)	989, 1094
BlsI	GCNGC	2 cut(s)	990, 1095
Bme1390I	CCNGG	1 cut(s)	822
BmrFI	CCNGG	1 cut(s)	822
BmsI	GCATC	2 cut(s)	10, 460
BpiI	GAAGAC	1 cut(s)	503
BpmI	CTGGAG	1 cut(s)	672
Bpu10I	CCTNAGC	1 cut(s)	840
Bsa29I	ATCGAT	1 cut(s)	595
BsaI	GGTCTC	1 cut(s)	731
BsaJI	CCNNGG	1 cut(s)	821
BsaWI	WCCGGW	1 cut(s)	483
BsaXI	ACNNNNNCTCC	4 cut(s)	741, 771, 842, 872
Bse118I	RCCGGY	1 cut(s)	483
Bse1I	ACTGG	2 cut(s)	122, 655
BseBI	CCWGG	1 cut(s)	822
BseCI	ATCGAT	1 cut(s)	595
BseDI	CCNNGG	1 cut(s)	821
BseMII	CTCAG	5 cut(s)	435, 510, 596, 759, 831
BseNI	ACTGG	2 cut(s)	122, 655
BseRI	GAGGAG	5 cut(s)	176, 185, 275, 536, 1124
BseXI	GCAGC	1 cut(s)	1000
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	3 cut(s)	121, 192, 420
BshTI	ACCGGT	1 cut(s)	483
BshVI	ATCGAT	1 cut(s)	595
BsiHKAI	GWGCWC	1 cut(s)	1072
BsiSI	CCGG	2 cut(s)	421, 484
BslFI	GGGAC	1 cut(s)	911
BsmAI	GTCTC	3 cut(s)	446, 641, 731
BsmFI	GGGAC	1 cut(s)	911
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	3 cut(s)	121, 192, 420
Bso31I	GGTCTC	1 cut(s)	731
Bsp1286I	GDGCHC	1 cut(s)	1072
Bsp143I	GATC	1 cut(s)	911
BspACI	CCGC	1 cut(s)	1093
BspANI	GGCC	3 cut(s)	121, 192, 420
BspCNI	CTCAG	5 cut(s)	436, 511, 595, 758, 832
BspDI	ATCGAT	1 cut(s)	595
BspHI	TCATGA	1 cut(s)	762
BspMI	ACCTGC	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	731
BsrFI	RCCGGY	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	122, 655
BssAI	RCCGGY	1 cut(s)	483
BssECI	CCNNGG	1 cut(s)	821
BssMI	GATC	1 cut(s)	911
Bst2UI	CCWGG	1 cut(s)	822
Bst4CI	ACNGT	1 cut(s)	788
Bst6I	CTCTTC	1 cut(s)	365
BstC8I	GCNNGC	3 cut(s)	720, 930, 1098
BstDEI	CTNAG	5 cut(s)	444, 519, 582, 745, 840
BstEII	GGTNACC	1 cut(s)	479
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	1 cut(s)	914
BstMAI	GTCTC	3 cut(s)	446, 641, 731
BstMBI	GATC	1 cut(s)	911
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 1051, 1082, 1133
BstNI	CCWGG	1 cut(s)	822
BstNSI	RCATGY	1 cut(s)	697
BstPI	GGTNACC	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	820
BstV1I	GCAGC	1 cut(s)	1000
BstV2I	GAAGAC	1 cut(s)	503
Bsu15I	ATCGAT	1 cut(s)	595
BsuI	GTATCC	2 cut(s)	39, 595
BsuRI	GGCC	3 cut(s)	121, 192, 420
BsuTUI	ATCGAT	1 cut(s)	595
BtsIMutI	CAGTG	3 cut(s)	9, 590, 958
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	3 cut(s)	720, 930, 1098
CaiI	CAGNNNCTG	2 cut(s)	650, 836
CciI	TCATGA	1 cut(s)	762
CfoI	GCGC	1 cut(s)	363
Cfr10I	RCCGGY	1 cut(s)	483
ClaI	ATCGAT	1 cut(s)	595
Csp6I	GTAC	2 cut(s)	404, 619
CspAI	ACCGGT	1 cut(s)	483
CviAII	CATG	4 cut(s)	413, 449, 694, 763
CviQI	GTAC	2 cut(s)	404, 619
DdeI	CTNAG	5 cut(s)	444, 519, 582, 745, 840
DpnI	GATC	1 cut(s)	913
DpnII	GATC	1 cut(s)	911
DraIII	CACNNNGTG	2 cut(s)	416, 585
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
Eco31I	GGTCTC	1 cut(s)	731
Eco57I	CTGAAG	2 cut(s)	33, 629
Eco91I	GGTNACC	1 cut(s)	479
EcoO65I	GGTNACC	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	826
EcoRII	CCWGG	1 cut(s)	820
FaeI	CATG	4 cut(s)	416, 452, 697, 766
FaqI	GGGAC	1 cut(s)	911
FatI	CATG	4 cut(s)	412, 448, 693, 762
Fnu4HI	GCNGC	2 cut(s)	989, 1094
Fsp4HI	GCNGC	2 cut(s)	989, 1094
FspBI	CTAG	6 cut(s)	117, 467, 663, 771, 1004, 1137
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	2 cut(s)	989, 1094
GsuI	CTGGAG	1 cut(s)	672
HaeIII	GGCC	3 cut(s)	121, 192, 420
HapII	CCGG	2 cut(s)	421, 484
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	4 cut(s)	416, 452, 697, 766
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HinfI	GANTC	7 cut(s)	52, 71, 508, 743, 833, 857, 935
HpaII	CCGG	2 cut(s)	421, 484
HphI	GGTGA	5 cut(s)	47, 191, 278, 491, 699
Hpy188I	TCNGA	6 cut(s)	36, 520, 553, 832, 862, 945
Hpy188III	TCNNGA	3 cut(s)	682, 747, 763
HpyAV	CCTTC	5 cut(s)	182, 225, 538, 879, 888
HpyCH4III	ACNGT	1 cut(s)	788
HpyCH4V	TGCA	8 cut(s)	23, 77, 343, 428, 539, 644, 791, 1045
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 1051, 1082, 1133
HpyF3I	CTNAG	5 cut(s)	444, 519, 582, 745, 840
Hsp92II	CATG	4 cut(s)	416, 452, 697, 766
HspAI	GCGC	1 cut(s)	361
Kzo9I	GATC	1 cut(s)	911
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	1 cut(s)	1000
LweI	GCATC	2 cut(s)	10, 460
MaeI	CTAG	6 cut(s)	117, 467, 663, 771, 1004, 1137
MaeIII	GTNAC	2 cut(s)	479, 953
MalI	GATC	1 cut(s)	913
MboI	GATC	1 cut(s)	911
MhlI	GDGCHC	1 cut(s)	1072
MluCI	AATT	5 cut(s)	392, 638, 826, 947, 1080
MlyI	GAGTC	3 cut(s)	517, 737, 866
MmeI	TCCRAC	1 cut(s)	840
MroXI	GAANNNNTTC	1 cut(s)	106
MseI	TTAA	2 cut(s)	318, 698
MslI	CAYNNNNRTG	3 cut(s)	135, 228, 698
MspI	CCGG	2 cut(s)	421, 484
MspR9I	CCNGG	1 cut(s)	822
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	822
MwoI	GCNNNNNNNGC	4 cut(s)	88, 1051, 1082, 1133
NdeII	GATC	1 cut(s)	911
NlaIII	CATG	4 cut(s)	416, 452, 697, 766
NmuCI	GTSAC	2 cut(s)	479, 953
NspI	RCATGY	1 cut(s)	697
PagI	TCATGA	1 cut(s)	762
PciI	ACATGT	1 cut(s)	693
PctI	GAATGC	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	106
PfeI	GAWTC	4 cut(s)	52, 71, 833, 935
PinAI	ACCGGT	1 cut(s)	483
PkrI	GCNGC	2 cut(s)	990, 1095
PleI	GAGTC	3 cut(s)	516, 737, 865
PpsI	GAGTC	3 cut(s)	516, 737, 865
PscI	ACATGT	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	820
PspEI	GGTNACC	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	820
PstNI	CAGNNNCTG	2 cut(s)	650, 836
RsaI	GTAC	2 cut(s)	405, 620
RsaNI	GTAC	2 cut(s)	404, 619
RseI	CAYNNNNRTG	3 cut(s)	135, 228, 698
SaqAI	TTAA	2 cut(s)	318, 698
SatI	GCNGC	2 cut(s)	989, 1094
Sau3AI	GATC	1 cut(s)	911
SchI	GAGTC	3 cut(s)	517, 737, 866
ScrFI	CCNGG	1 cut(s)	822
SduI	GDGCHC	1 cut(s)	1072
SetI	ASST	9 cut(s)	29, 93, 97, 537, 549, 558, 658, 890, 1005
SfaNI	GCATC	2 cut(s)	10, 460
SmiMI	CAYNNNNRTG	3 cut(s)	135, 228, 698
Sse9I	AATT	5 cut(s)	392, 638, 826, 947, 1080
SsiI	CCGC	1 cut(s)	1093
SspMI	CTAG	6 cut(s)	117, 467, 663, 771, 1004, 1137
StyD4I	CCNGG	1 cut(s)	820
TaaI	ACNGT	1 cut(s)	788
TaqI	TCGA	2 cut(s)	100, 595
TasI	AATT	5 cut(s)	392, 638, 826, 947, 1080
TatI	WGTACW	1 cut(s)	618
TauI	GCSGC	1 cut(s)	1096
TfiI	GAWTC	4 cut(s)	52, 71, 833, 935
Tru1I	TTAA	2 cut(s)	318, 698
Tru9I	TTAA	2 cut(s)	318, 698
TscAI	CASTG	3 cut(s)	16, 590, 958
TseFI	GTSAC	2 cut(s)	479, 953
TseI	GCWGC	1 cut(s)	988
Tsp45I	GTSAC	2 cut(s)	479, 953
TspDTI	ATGAA	5 cut(s)	99, 212, 405, 751, 779
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	3 cut(s)	16, 590, 958
XapI	RAATTY	4 cut(s)	392, 638, 826, 947
XceI	RCATGY	1 cut(s)	697
XmnI	GAANNNNTTC	1 cut(s)	106
XspI	CTAG	6 cut(s)	117, 467, 663, 771, 1004, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.