FvH4_1g05150
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003047
Physical Location & Seq
Reverse (-)
2733389 .. 2736091
2703 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05150.t4

Sequence Viewer

Length: 1095 bp
ATGGACGACATGGAAGACGACCAAAGGTACCACCCGAAACCCTACTCGTTAAACCACCATAGCTCCTCGAACCGGCGAAACCCCCACATCCGTAACACCCCGTATTCCCGGCCACCGCCGCCCAATCGGTACTCGCCGGAAGACGACGACGACGCTATCGAAGACGATTTGGACGAGGAGAGCTACGGCAAACAAGACGACGTCGTCGTCGTGGCGGAGCAGTACCACCAGCACCACCCGAACCGCGGCTTCGACGCCGAGAACGGCTGGGAATGGCACCCGAAGAAGAGGAAGCTGAAGAATTTGGATCCGGGTTCGGGTTACGAGTTCGCGCCCCGGGTCAAAATGCCGGGTCGGGTCGGGTCGGGTCAGGAGGAGTGGACGGAGCACGCGGTGTTTGTGCTGCTGGAGGTTTGGGGGGACAGGTTTCTGCAGCTTGGGAGGAAGAGCTTGCGGTCGGAGGATTGGGGTGACGTGGCGGCGAAGGTATCCGAGGGGTGTAAGATGGAGAGGAGTGAGAAGCAATGTAGGAGAATGCTGGATATGCTGAAGAGGAAGTATAAGAAGGAGAAGGCGAAAATGGAGGAAGGAGGGGGTTCAAGCAATTGGGGGTACTATAAGAAGATGGAAATGCTGATGGTGAATTCGATGAGGCAGGAATGTGGGTTGGCTTGTGGGGTGGATAATGGGGAGTATGTGTTTATGAACACGAGGGTGTATTTGGAGAAGTCGAATGGGTTTGATGAGATGATGGATAGTCCGGGGGAGTCGGAGGATGATGATGAGAATGAGAATGAGAATGTGAGTGGTCAGAACGGGTTTGGGTTTGCTCTTCCGAGACAGGGAGGGTCTTCGTACAGAGTGTTGGCGGAGTCTATTCAGAAGTTTGGGGAGATTTATGAGAATCTTGAGAGTAGAAAGAGGCAGCAGATGATGGAGTTGGAGAAGATGAGGAGGGAGTTTAATAAGGAAATGGAGGTGCAGAAGAAGCAGATTCTTGAGAGGGCGCAGGCGGAGATTGCAAAGATTCAGGAGGCGGGTGATGATGATGATGATGAAGACTCGGATACTTCTGCTGAAGATCTTACCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

365

Amino Acids

42.27

Weight (kDa)

4.89

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 125 - 211 2.9e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 203, 206
AatII GACGTC 1 cut(s) 204
Acc65I GGTACC 1 cut(s) 27
AccB1I GGYRCC 2 cut(s) 27, 276
AccII CGCG 3 cut(s) 246, 332, 392
AclWI GGATC 2 cut(s) 302, 315
AcoI YGGCCR 1 cut(s) 110
AcsI RAATTY 2 cut(s) 301, 643
AcuI CTGAAG 2 cut(s) 317, 569
AcyI GRCGYC 2 cut(s) 201, 255
AdeI CACNNNGTG 1 cut(s) 394
AfaI GTAC 5 cut(s) 29, 131, 224, 614, 857
AfiI CCNNNNNNNGG 4 cut(s) 72, 245, 317, 842
AgsI TTSAA 1 cut(s) 600
AjiI CACGTC 1 cut(s) 475
AleI CACNNNNGTG 1 cut(s) 713
AluBI AGCT 5 cut(s) 63, 183, 295, 436, 450
AluI AGCT 5 cut(s) 63, 183, 295, 436, 450
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 832
AlwI GGATC 2 cut(s) 302, 315
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 3 cut(s) 403, 433, 925
ApoI RAATTY 2 cut(s) 301, 643
Asp718I GGTACC 1 cut(s) 27
AspLEI GCGC 2 cut(s) 334, 1009
AsuC2I CCSGG 6 cut(s) 109, 312, 337, 338, 351, 762
AsuHPI GGTGA 3 cut(s) 482, 652, 1052
AvaI CYCGRG 1 cut(s) 336
BamHI GGATCC 1 cut(s) 307
BanI GGYRCC 2 cut(s) 27, 276
BauI CACGAG 1 cut(s) 709
BbsI GAAGAC 5 cut(s) 21, 147, 168, 843, 1065
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 3 cut(s) 390, 445, 937
BccI CCATC 5 cut(s) 499, 619, 631, 745, 928
BceAI ACGGC 2 cut(s) 202, 280
BciVI GTATCC 2 cut(s) 499, 1060
BcnI CCSGG 6 cut(s) 109, 312, 337, 338, 351, 762
BcoDI GTCTC 1 cut(s) 832
BfmI CTRYAG 1 cut(s) 431
BfuI GTATCC 2 cut(s) 499, 1060
BglII AGATCT 1 cut(s) 1081
BisI GCNGC 6 cut(s) 119, 247, 404, 434, 480, 926
BlsI GCNGC 6 cut(s) 120, 248, 405, 435, 481, 927
Bme1390I CCNGG 6 cut(s) 109, 312, 337, 338, 351, 762
BmeT110I CYCGRG 1 cut(s) 336
BmgBI CACGTC 1 cut(s) 475
BmiI GGNNCC 3 cut(s) 29, 278, 309
BmrFI CCNGG 6 cut(s) 109, 312, 337, 338, 351, 762
BpiI GAAGAC 5 cut(s) 21, 147, 168, 843, 1065
BpmI CTGGAG 1 cut(s) 428
BpuEI CTTGAG 2 cut(s) 929, 1019
BpuMI CCSGG 6 cut(s) 109, 312, 337, 338, 351, 762
BsaHI GRCGYC 2 cut(s) 201, 255
BsaJI CCNNGG 5 cut(s) 244, 335, 336, 492, 761
BsaXI ACNNNNNCTCC 4 cut(s) 47, 77, 683, 713
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 245, 317, 842
Bse118I RCCGGY 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 530
BseDI CCNNGG 5 cut(s) 244, 335, 336, 492, 761
BseGI GGATG 2 cut(s) 87, 781
BseLI CCNNNNNNNGG 4 cut(s) 72, 245, 317, 842
BseMI GCAATG 1 cut(s) 530
BseRI GAGGAG 5 cut(s) 55, 191, 389, 526, 967
BseXI GCAGC 3 cut(s) 390, 445, 937
BseYI CCCAGC 1 cut(s) 267
BsgI GTGCAG 1 cut(s) 1001
Bsh1236I CGCG 3 cut(s) 246, 332, 392
Bsh1285I CGRYCG 1 cut(s) 458
BshFI GGCC 1 cut(s) 112
BshNI GGYRCC 2 cut(s) 27, 276
BsiEI CGRYCG 1 cut(s) 458
BsiHKAI GWGCWC 1 cut(s) 390
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 7 cut(s) 73, 109, 137, 311, 337, 350, 761
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 4 cut(s) 72, 245, 317, 842
BsmAI GTCTC 1 cut(s) 832
BsmFI GGGAC 1 cut(s) 434
BsmI GAATGC 1 cut(s) 540
BsnI GGCC 1 cut(s) 112
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 2 cut(s) 307, 1081
BspANI GGCC 1 cut(s) 112
BspFNI CGCG 3 cut(s) 246, 332, 392
BspLI GGNNCC 3 cut(s) 29, 278, 309
BspMAI CTGCAG 1 cut(s) 435
BspPI GGATC 2 cut(s) 302, 315
BspQI GCTCTTC 2 cut(s) 440, 837
BspT107I GGYRCC 2 cut(s) 27, 276
BsrDI GCAATG 1 cut(s) 530
BsrFI RCCGGY 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 72
BssECI CCNNGG 5 cut(s) 244, 335, 336, 492, 761
BssMI GATC 2 cut(s) 307, 1081
BssNI GRCGYC 2 cut(s) 201, 255
BssSI CACGAG 1 cut(s) 709
Bst2BI CACGAG 1 cut(s) 709
Bst6I CTCTTC 4 cut(s) 281, 440, 545, 837
BstACI GRCGYC 2 cut(s) 201, 255
BstC8I GCNNGC 3 cut(s) 390, 452, 1011
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 2 cut(s) 87, 781
BstFNI CGCG 3 cut(s) 246, 332, 392
BstHHI GCGC 2 cut(s) 334, 1009
BstKTI GATC 2 cut(s) 310, 1084
BstMAI GTCTC 1 cut(s) 832
BstMBI GATC 2 cut(s) 307, 1081
BstMCI CGRYCG 1 cut(s) 458
BstMWI GCNNNNNNNGC 4 cut(s) 118, 544, 988, 1019
BstSCI CCNGG 6 cut(s) 107, 310, 335, 336, 349, 760
BstSFI CTRYAG 1 cut(s) 431
BstUI CGCG 3 cut(s) 246, 332, 392
BstV1I GCAGC 3 cut(s) 390, 445, 937
BstV2I GAAGAC 5 cut(s) 21, 147, 168, 843, 1065
BstX2I RGATCY 2 cut(s) 307, 1081
BstYI RGATCY 2 cut(s) 307, 1081
BsuI GTATCC 2 cut(s) 499, 1060
BsuRI GGCC 1 cut(s) 112
BtgI CCRYGG 1 cut(s) 244
BtrI CACGTC 1 cut(s) 475
BtsCI GGATG 2 cut(s) 87, 781
Cac8I GCNNGC 3 cut(s) 390, 452, 1011
CfoI GCGC 2 cut(s) 334, 1009
Cfr10I RCCGGY 1 cut(s) 72
Cfr42I CCGCGG 1 cut(s) 247
Cfr9I CCCGGG 1 cut(s) 336
CseI GACGC 2 cut(s) 161, 263
Csp6I GTAC 5 cut(s) 28, 130, 223, 613, 856
CviAII CATG 1 cut(s) 10
CviJI RGCY 9 cut(s) 63, 112, 183, 249, 267, 295, 436, 450, 671
CviKI_1 RGCY 9 cut(s) 63, 112, 183, 249, 267, 295, 436, 450, 671
CviQI GTAC 5 cut(s) 28, 130, 223, 613, 856
DpnI GATC 2 cut(s) 309, 1083
DpnII GATC 2 cut(s) 307, 1081
DraIII CACNNNGTG 1 cut(s) 394
DrdI GACNNNNNNGTC 2 cut(s) 203, 206
DseDI GACNNNNNNGTC 2 cut(s) 203, 206
EaeI YGGCCR 1 cut(s) 110
Eam1104I CTCTTC 4 cut(s) 281, 440, 545, 837
EarI CTCTTC 4 cut(s) 281, 440, 545, 837
EciI GGCGGA 3 cut(s) 230, 884, 1028
Eco57I CTGAAG 2 cut(s) 317, 569
Eco88I CYCGRG 1 cut(s) 336
EcoRI GAATTC 1 cut(s) 643
FaeI CATG 1 cut(s) 13
FaiI YATR 8 cut(s) 11, 60, 545, 561, 618, 696, 704, 900
FaqI GGGAC 1 cut(s) 434
FatI CATG 1 cut(s) 9
FauI CCCGC 1 cut(s) 1030
Fnu4HI GCNGC 6 cut(s) 119, 247, 404, 434, 480, 926
FokI GGATG 2 cut(s) 74, 788
Fsp4HI GCNGC 6 cut(s) 119, 247, 404, 434, 480, 926
GlaI GCGC 2 cut(s) 333, 1008
GluI GCNGC 6 cut(s) 119, 247, 404, 434, 480, 926
GsaI CCCAGC 1 cut(s) 271
GsuI CTGGAG 1 cut(s) 428
HaeIII GGCC 1 cut(s) 112
HapII CCGG 7 cut(s) 73, 109, 137, 311, 337, 350, 761
HgaI GACGC 2 cut(s) 161, 263
HhaI GCGC 2 cut(s) 334, 1009
Hin1I GRCGYC 2 cut(s) 201, 255
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 2 cut(s) 332, 1007
HinP1I GCGC 2 cut(s) 332, 1007
HinfI GANTC 6 cut(s) 767, 872, 904, 994, 1027, 1061
HpaII CCGG 7 cut(s) 73, 109, 137, 311, 337, 350, 761
HphI GGTGA 3 cut(s) 482, 652, 1052
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 7 cut(s) 460, 493, 772, 813, 837, 882, 1066
Hpy188III TCNNGA 4 cut(s) 371, 908, 998, 1031
Hpy8I GTNNAC 1 cut(s) 381
Hpy99I CGWCG 8 cut(s) 149, 152, 155, 203, 206, 209, 212, 257
HpyAV CCTTC 4 cut(s) 478, 559, 565, 581
HpyCH4IV ACGT 2 cut(s) 201, 474
HpyCH4V TGCA 3 cut(s) 433, 982, 1022
HpyF10VI GCNNNNNNNGC 4 cut(s) 118, 544, 988, 1019
HpySE526I ACGT 2 cut(s) 201, 474
Hsp92I GRCGYC 2 cut(s) 201, 255
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 2 cut(s) 332, 1007
KpnI GGTACC 1 cut(s) 31
KspI CCGCGG 1 cut(s) 247
Kzo9I GATC 2 cut(s) 307, 1081
LguI GCTCTTC 2 cut(s) 440, 837
LmnI GCTCC 3 cut(s) 68, 217, 385
Lsp1109I GCAGC 3 cut(s) 390, 445, 937
MaeII ACGT 2 cut(s) 201, 474
MaeIII GTNAC 3 cut(s) 92, 320, 470
MalI GATC 2 cut(s) 309, 1083
MboI GATC 2 cut(s) 307, 1081
MfeI CAATTG 1 cut(s) 604
MflI RGATCY 2 cut(s) 307, 1081
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 3 cut(s) 301, 604, 643
MlyI GAGTC 3 cut(s) 776, 881, 1055
MmeI TCCRAC 3 cut(s) 438, 750, 921
MseI TTAA 2 cut(s) 50, 963
MslI CAYNNNNRTG 1 cut(s) 713
MspA1I CMGCKG 1 cut(s) 246
MspI CCGG 7 cut(s) 73, 109, 137, 311, 337, 350, 761
MspR9I CCNGG 6 cut(s) 109, 312, 337, 338, 351, 762
MunI CAATTG 1 cut(s) 604
Mva1269I GAATGC 1 cut(s) 540
MvnI CGCG 3 cut(s) 246, 332, 392
MwoI GCNNNNNNNGC 4 cut(s) 118, 544, 988, 1019
NciI CCSGG 6 cut(s) 109, 312, 337, 338, 351, 762
NdeII GATC 2 cut(s) 307, 1081
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 3 cut(s) 29, 278, 309
NmeAIII GCCGAG 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 470
OliI CACNNNNGTG 1 cut(s) 713
PciSI GCTCTTC 2 cut(s) 440, 837
PcsI WCGNNNNNNNCGW 4 cut(s) 156, 171, 204, 207
PctI GAATGC 1 cut(s) 540
PfeI GAWTC 3 cut(s) 904, 994, 1027
PflFI GACNNNGTC 2 cut(s) 200, 203
PkrI GCNGC 6 cut(s) 120, 248, 405, 435, 481, 927
PleI GAGTC 3 cut(s) 775, 880, 1055
PpsI GAGTC 3 cut(s) 775, 880, 1055
PspFI CCCAGC 1 cut(s) 267
PspN4I GGNNCC 3 cut(s) 29, 278, 309
PstI CTGCAG 1 cut(s) 435
PsuI RGATCY 2 cut(s) 307, 1081
PsyI GACNNNGTC 2 cut(s) 200, 203
RsaI GTAC 5 cut(s) 29, 131, 224, 614, 857
RsaNI GTAC 5 cut(s) 28, 130, 223, 613, 856
RseI CAYNNNNRTG 1 cut(s) 713
SacII CCGCGG 1 cut(s) 247
SapI GCTCTTC 2 cut(s) 440, 837
SaqAI TTAA 2 cut(s) 50, 963
SatI GCNGC 6 cut(s) 119, 247, 404, 434, 480, 926
Sau3AI GATC 2 cut(s) 307, 1081
SchI GAGTC 3 cut(s) 776, 881, 1055
ScrFI CCNGG 6 cut(s) 109, 312, 337, 338, 351, 762
SduI GDGCHC 1 cut(s) 390
SfcI CTRYAG 1 cut(s) 431
Sfr303I CCGCGG 1 cut(s) 247
SgrBI CCGCGG 1 cut(s) 247
SmaI CCCGGG 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 713
SmlI CTYRAG 2 cut(s) 908, 998
SmoI CTYRAG 2 cut(s) 908, 998
Sse9I AATT 3 cut(s) 301, 604, 643
StyD4I CCNGG 6 cut(s) 107, 310, 335, 336, 349, 760
TaiI ACGT 2 cut(s) 204, 477
TaqI TCGA 5 cut(s) 68, 159, 252, 647, 731
TasI AATT 3 cut(s) 301, 604, 643
TauI GCSGC 3 cut(s) 121, 249, 482
TfiI GAWTC 3 cut(s) 904, 994, 1027
Tru1I TTAA 2 cut(s) 50, 963
Tru9I TTAA 2 cut(s) 50, 963
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 3 cut(s) 403, 433, 925
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 2 cut(s) 719, 1071
TspGWI ACGGA 2 cut(s) 80, 398
TspMI CCCGGG 1 cut(s) 336
Tth111I GACNNNGTC 2 cut(s) 200, 203
XapI RAATTY 2 cut(s) 301, 643
XmaI CCCGGG 1 cut(s) 336
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.