Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003047

Physical Location & Seq

Genomic Coordinates Forward (+)

58901065 .. 58903510

Gene Structure 2446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG393000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGATGACACTGAAGATGATGCAAGGTATCCTCCGAATGTGTATGGTGCGAATCACCCACAGGGCTATGATTCTGCACAGCCCCCGAAGCTACCTGCTCGAAGTGGTTCATTTTCTAGGCCAGTTAGTCATTATGATGACGATGAGGATGATGAGGATGAGGAGGATGAAGAGTTGGGTGAGGAAGAAGGCCACAATGGTCAAAATGGGTATCCTTCTGTTCATAAAGATGTTGGGGATGATGACGATGACGATGATGAGGAGGGTGATGATGATGAGGATGAGGATGACGAAGAAGATGATAAGAGCAAAGTCTTTAAGAGGATTGACGATGATGATTTGCAAAAGCACCCAAAGAAGCGCAAGTTGAAGAGTTTGATTTCAAGTTATGAATTTGCTCCTCGTGTACCTGCTCCATCGGTTCCAGCACTCCCTGCCCCAAGACAATCACATGGTGGCCGGAATGCACTTACGGATTGGACTGAGCATGAGACATTTGTTTTACTAGATGCTTGGGGTGACCGGTTTCTTCGGCGTGGGAAAAAGAGTCTTCGCTCTGAGGAGTGGCAAGAGGTTGCAGAGAAGGTGTCAGAGGTGTCAAAGATTGAAAGGACAGACACTCAGTGTCGTAATCGATTGGATACCCTGAAGAAGAAGTACAAAAAGGAGAGGATCAAATTTTCAGAGACTGGAGTTGCTACTAGCAAGTGGGTATATTTCAAGAAGATGGACATGTTAATGTCATCGCCACAACAGCAAGCTGGTCTCTCTTGTGGTTTGGACTCAGGAGAGTATGTTTTCATGAACCCTAGAGTGTATTTGAACCGTGCCAACGGGTTAGATGAGATGAGGGATAGTCCAGGGAATTCAGAATCTGCTGAGGGAGTGGAGGATGAGTCGGATGGGCTACCACCCAAGAAGAGAAGGTTTGGAAGGGACAATGATGAGCGATCTTCCTTTAGATTGCTTGCTGATTCTATTCAGAAATTCAGTGACATATATGAGAAGATTGAAAAAAGTAAAAGGCAGCAGATGGTAGAGCTAGAGAAGATGAGGATGGATTTCCATAGGGATTTGGAAATGCAGAAAAGGCAGATTATGGAGAGAGCACAGGCTGAAATTGCGAAAATGCGGCAGGCTGATGATGAGGAGAATGATGTGTCTGCTGAAAATGCTAGTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

394

Amino Acids

45.32

Weight (kDa)

4.68

Isoelectric Point (pI)

57.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	159 - 246	4.4e-19	Myb/SANT-like DNA-binding domain
MADF_DNA_bdg	PF10545	181 - 244	5.1e-06	Alcohol dehydrogenase transcription factor Myb/SANT-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24490
fragaria_vesca	FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_6g31095 FvH4_6g31095
malus_domestica	MD09G1212700.v1.1 MD15G1188000.v1.1 MD17G1195600.v1.1
prunus_persica	Prupe.3G071500_v2.0.a1 Prupe.3G071500_v2.0.a1 Prupe.7G228600_v2.0.a1
pyrus_communis	pycom09g13040 pycom15g16850 pycom17g20120
rosa_chinensis	RchiOBHm_Chr2g0090791 RchiOBHm_Chr2g0137821
rosa_laevigata	RLG00000016143 RLG00000019678
rosa_multiflora	Rmu_sc0002170.1_g000002 Rmu_ssc0000367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106790 Rroxscaffold_2G00150820
rosa_rugosa	Rorug02G0010500 Rorug02G0346200 Rorug02G0346300
rosa_samantha	Rh2AG056500 Rh2AG393000 Rh2BG055200 Rh2BG400700 Rh2CG057600 Rh2CG379700 Rh2DG056200 Rh2DG415600
rosa_wichuraiana	Rw2G004600 Rw2G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	103, 418
AciI	CCGC	1 cut(s)	1132
AclWI	GGATC	1 cut(s)	680
AcoI	YGGCCR	1 cut(s)	457
AcsI	RAATTY	4 cut(s)	392, 677, 865, 986
AcuI	CTGAAG	2 cut(s)	33, 668
AdeI	CACNNNGTG	2 cut(s)	455, 624
AfaI	GTAC	2 cut(s)	408, 659
AflIII	ACRYGT	1 cut(s)	732
AgeI	ACCGGT	1 cut(s)	522
AgsI	TTSAA	6 cut(s)	370, 384, 608, 721, 823, 1013
AjnI	CCWGG	1 cut(s)	859
AluBI	AGCT	3 cut(s)	91, 761, 1042
AluI	AGCT	3 cut(s)	91, 761, 1042
Alw21I	GWGCWC	1 cut(s)	1111
Alw26I	GTCTC	3 cut(s)	485, 680, 770
AlwI	GGATC	1 cut(s)	680
AlwNI	CAGNNNCTG	2 cut(s)	689, 875
AoxI	GGCC	3 cut(s)	119, 190, 457
ApeKI	GCWGC	1 cut(s)	1027
ApoI	RAATTY	4 cut(s)	392, 677, 865, 986
AsiGI	ACCGGT	1 cut(s)	522
Asp700I	GAANNNNTTC	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	363
AsuHPI	GGTGA	4 cut(s)	47, 191, 278, 530
BarI	GAAGNNNNNNTAC	2 cut(s)	641, 673
BauI	CACGAG	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	542
Bbv12I	GWGCWC	1 cut(s)	1111
BbvCI	CCTCAGC	1 cut(s)	879
BbvI	GCAGC	1 cut(s)	1039
BccI	CCATC	5 cut(s)	424, 721, 896, 1027, 1051
BciT130I	CCWGG	1 cut(s)	861
BciVI	GTATCC	3 cut(s)	39, 222, 634
BcoDI	GTCTC	3 cut(s)	485, 680, 770
BfaI	CTAG	6 cut(s)	117, 506, 702, 810, 1043, 1176
BfuAI	ACCTGC	2 cut(s)	103, 418
BfuI	GTATCC	3 cut(s)	39, 222, 634
BisI	GCNGC	2 cut(s)	1028, 1133
BlsI	GCNGC	2 cut(s)	1029, 1134
Bme1390I	CCNGG	1 cut(s)	861
BmiI	GGNNCC	1 cut(s)	423
BmrFI	CCNGG	1 cut(s)	861
BmsI	GCATC	2 cut(s)	10, 499
BpiI	GAAGAC	1 cut(s)	542
BpmI	CTGGAG	1 cut(s)	711
Bpu10I	CCTNAGC	1 cut(s)	879
Bsa29I	ATCGAT	1 cut(s)	634
BsaI	GGTCTC	1 cut(s)	770
BsaJI	CCNNGG	1 cut(s)	860
BsaWI	WCCGGW	1 cut(s)	522
BsaXI	ACNNNNNCTCC	4 cut(s)	780, 810, 881, 911
Bse118I	RCCGGY	1 cut(s)	522
Bse1I	ACTGG	2 cut(s)	122, 694
BseBI	CCWGG	1 cut(s)	861
BseCI	ATCGAT	1 cut(s)	634
BseDI	CCNNGG	1 cut(s)	860
BseMII	CTCAG	5 cut(s)	474, 549, 635, 798, 870
BseNI	ACTGG	2 cut(s)	122, 694
BseRI	GAGGAG	5 cut(s)	176, 275, 390, 575, 1163
BseXI	GCAGC	1 cut(s)	1039
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	3 cut(s)	121, 192, 459
BshTI	ACCGGT	1 cut(s)	522
BshVI	ATCGAT	1 cut(s)	634
BsiHKAI	GWGCWC	1 cut(s)	1111
BsiSI	CCGG	2 cut(s)	460, 523
BslFI	GGGAC	1 cut(s)	950
BsmAI	GTCTC	3 cut(s)	485, 680, 770
BsmFI	GGGAC	1 cut(s)	950
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	3 cut(s)	121, 192, 459
Bso31I	GGTCTC	1 cut(s)	770
Bsp1286I	GDGCHC	1 cut(s)	1111
Bsp143I	GATC	2 cut(s)	672, 950
BspACI	CCGC	1 cut(s)	1132
BspANI	GGCC	3 cut(s)	121, 192, 459
BspCNI	CTCAG	5 cut(s)	475, 550, 634, 797, 871
BspDI	ATCGAT	1 cut(s)	634
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	1 cut(s)	423
BspMI	ACCTGC	2 cut(s)	103, 418
BspPI	GGATC	1 cut(s)	680
BspTNI	GGTCTC	1 cut(s)	770
BsrFI	RCCGGY	1 cut(s)	522
BsrI	ACTGG	2 cut(s)	122, 694
BssAI	RCCGGY	1 cut(s)	522
BssECI	CCNNGG	1 cut(s)	860
BssMI	GATC	2 cut(s)	672, 950
BssSI	CACGAG	1 cut(s)	402
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	861
Bst4CI	ACNGT	1 cut(s)	827
Bst6I	CTCTTC	3 cut(s)	165, 365, 914
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	3 cut(s)	759, 969, 1137
BstDEI	CTNAG	5 cut(s)	483, 558, 621, 784, 879
BstEII	GGTNACC	1 cut(s)	518
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	2 cut(s)	675, 953
BstMAI	GTCTC	3 cut(s)	485, 680, 770
BstMBI	GATC	2 cut(s)	672, 950
BstMWI	GCNNNNNNNGC	6 cut(s)	88, 434, 754, 1090, 1121, 1172
BstNI	CCWGG	1 cut(s)	861
BstNSI	RCATGY	1 cut(s)	736
BstPI	GGTNACC	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	859
BstV1I	GCAGC	1 cut(s)	1039
BstV2I	GAAGAC	1 cut(s)	542
Bsu15I	ATCGAT	1 cut(s)	634
BsuI	GTATCC	3 cut(s)	39, 222, 634
BsuRI	GGCC	3 cut(s)	121, 192, 459
BsuTUI	ATCGAT	1 cut(s)	634
BtgZI	GCGATG	1 cut(s)	729
BtsIMutI	CAGTG	3 cut(s)	9, 629, 997
BveI	ACCTGC	2 cut(s)	103, 418
Cac8I	GCNNGC	3 cut(s)	759, 969, 1137
CaiI	CAGNNNCTG	2 cut(s)	689, 875
CciI	TCATGA	1 cut(s)	801
CfoI	GCGC	1 cut(s)	363
Cfr10I	RCCGGY	1 cut(s)	522
ClaI	ATCGAT	1 cut(s)	634
Csp6I	GTAC	2 cut(s)	407, 658
CspAI	ACCGGT	1 cut(s)	522
CviAII	CATG	4 cut(s)	452, 488, 733, 802
CviQI	GTAC	2 cut(s)	407, 658
DdeI	CTNAG	5 cut(s)	483, 558, 621, 784, 879
DpnI	GATC	2 cut(s)	674, 952
DpnII	GATC	2 cut(s)	672, 950
DraIII	CACNNNGTG	2 cut(s)	455, 624
EaeI	YGGCCR	1 cut(s)	457
Eam1104I	CTCTTC	3 cut(s)	165, 365, 914
EarI	CTCTTC	3 cut(s)	165, 365, 914
Eco31I	GGTCTC	1 cut(s)	770
Eco57I	CTGAAG	2 cut(s)	33, 668
Eco91I	GGTNACC	1 cut(s)	518
EcoO65I	GGTNACC	1 cut(s)	518
EcoRI	GAATTC	1 cut(s)	865
EcoRII	CCWGG	1 cut(s)	859
FaeI	CATG	4 cut(s)	455, 491, 736, 805
FaqI	GGGAC	1 cut(s)	950
FatI	CATG	4 cut(s)	451, 487, 732, 801
Fnu4HI	GCNGC	2 cut(s)	1028, 1133
Fsp4HI	GCNGC	2 cut(s)	1028, 1133
FspBI	CTAG	6 cut(s)	117, 506, 702, 810, 1043, 1176
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	2 cut(s)	1028, 1133
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	3 cut(s)	121, 192, 459
HapII	CCGG	2 cut(s)	460, 523
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	4 cut(s)	455, 491, 736, 805
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HinfI	GANTC	7 cut(s)	52, 71, 547, 782, 872, 896, 974
HpaII	CCGG	2 cut(s)	460, 523
HphI	GGTGA	4 cut(s)	47, 191, 278, 530
Hpy166II	GTNNAC	1 cut(s)	407
Hpy188I	TCNGA	7 cut(s)	36, 559, 592, 685, 871, 901, 984
Hpy188III	TCNNGA	3 cut(s)	721, 786, 802
Hpy8I	GTNNAC	1 cut(s)	407
HpyAV	CCTTC	5 cut(s)	182, 225, 577, 918, 927
HpyCH4III	ACNGT	1 cut(s)	827
HpyCH4V	TGCA	6 cut(s)	23, 77, 343, 467, 578, 1084
HpyF10VI	GCNNNNNNNGC	6 cut(s)	88, 434, 754, 1090, 1121, 1172
HpyF3I	CTNAG	5 cut(s)	483, 558, 621, 784, 879
Hsp92II	CATG	4 cut(s)	455, 491, 736, 805
HspAI	GCGC	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	672, 950
LmnI	GCTCC	2 cut(s)	403, 418
Lsp1109I	GCAGC	1 cut(s)	1039
LweI	GCATC	2 cut(s)	10, 499
MaeI	CTAG	6 cut(s)	117, 506, 702, 810, 1043, 1176
MaeIII	GTNAC	2 cut(s)	518, 992
MalI	GATC	2 cut(s)	674, 952
MboI	GATC	2 cut(s)	672, 950
MhlI	GDGCHC	1 cut(s)	1111
MluCI	AATT	5 cut(s)	392, 677, 865, 986, 1119
MlyI	GAGTC	3 cut(s)	556, 776, 905
MmeI	TCCRAC	1 cut(s)	879
MroXI	GAANNNNTTC	1 cut(s)	106
MseI	TTAA	2 cut(s)	318, 737
MslI	CAYNNNNRTG	3 cut(s)	135, 228, 737
MspI	CCGG	2 cut(s)	460, 523
MspR9I	CCNGG	1 cut(s)	861
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	1 cut(s)	861
MwoI	GCNNNNNNNGC	6 cut(s)	88, 434, 754, 1090, 1121, 1172
NdeII	GATC	2 cut(s)	672, 950
NlaIII	CATG	4 cut(s)	455, 491, 736, 805
NlaIV	GGNNCC	1 cut(s)	423
NmuCI	GTSAC	2 cut(s)	518, 992
NspI	RCATGY	1 cut(s)	736
PagI	TCATGA	1 cut(s)	801
PciI	ACATGT	1 cut(s)	732
PctI	GAATGC	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	106
PfeI	GAWTC	4 cut(s)	52, 71, 872, 974
PinAI	ACCGGT	1 cut(s)	522
PkrI	GCNGC	2 cut(s)	1029, 1134
PleI	GAGTC	3 cut(s)	555, 776, 904
PpsI	GAGTC	3 cut(s)	555, 776, 904
PscI	ACATGT	1 cut(s)	732
Psp6I	CCWGG	1 cut(s)	859
PspEI	GGTNACC	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	859
PspN4I	GGNNCC	1 cut(s)	423
PstNI	CAGNNNCTG	2 cut(s)	689, 875
RsaI	GTAC	2 cut(s)	408, 659
RsaNI	GTAC	2 cut(s)	407, 658
RseI	CAYNNNNRTG	3 cut(s)	135, 228, 737
SaqAI	TTAA	2 cut(s)	318, 737
SatI	GCNGC	2 cut(s)	1028, 1133
Sau3AI	GATC	2 cut(s)	672, 950
SchI	GAGTC	3 cut(s)	556, 776, 905
ScrFI	CCNGG	1 cut(s)	861
SduI	GDGCHC	1 cut(s)	1111
SfaNI	GCATC	2 cut(s)	10, 499
SmiMI	CAYNNNNRTG	3 cut(s)	135, 228, 737
Sse9I	AATT	5 cut(s)	392, 677, 865, 986, 1119
SsiI	CCGC	1 cut(s)	1132
SspMI	CTAG	6 cut(s)	117, 506, 702, 810, 1043, 1176
StyD4I	CCNGG	1 cut(s)	859
TaaI	ACNGT	1 cut(s)	827
TaqI	TCGA	2 cut(s)	100, 634
TasI	AATT	5 cut(s)	392, 677, 865, 986, 1119
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	1 cut(s)	1135
TfiI	GAWTC	4 cut(s)	52, 71, 872, 974
Tru1I	TTAA	2 cut(s)	318, 737
Tru9I	TTAA	2 cut(s)	318, 737
TscAI	CASTG	3 cut(s)	16, 629, 997
TseFI	GTSAC	2 cut(s)	518, 992
TseI	GCWGC	1 cut(s)	1027
Tsp45I	GTSAC	2 cut(s)	518, 992
TspDTI	ATGAA	6 cut(s)	99, 183, 212, 405, 790, 818
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	3 cut(s)	16, 629, 997
XapI	RAATTY	4 cut(s)	392, 677, 865, 986
XceI	RCATGY	1 cut(s)	736
XmnI	GAANNNNTTC	1 cut(s)	106
XspI	CTAG	6 cut(s)	117, 506, 702, 810, 1043, 1176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.