Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003047

Physical Location & Seq

Genomic Coordinates Forward (+)

55598050 .. 55600543

Gene Structure 2494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50853

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGATGACACTGAAGATGATGCAAGGTATCCTCCGAATGTGTATGGTGCGAATCACCCACAGGGCTATGATTCTGCACAGCCCCCGAAGCTACCTGCTCGAAGTGGTTCATTTTCTAGGCCAGTTAGTCATTATGATGACGATGAGGATGATGAGGATGAGGAGTTGGGTGAGGAAGAAGGCCACAATGGTCAAAATGGTTATCCTTCTGTTCATAAAGATGTTGGGGATGATGACGATGACGATGATGAGGAGGGTGATGATGATGAGGATGAGGATGACGAAGAAGATGATAAGAGCAAAGTCTTTAAGAGGATTGACGATGATGATTTGCAAAAGCACCCAAAGAAGCGCAAGTTGAAGAGTTTGATTTCAAGTTATGAATTTGCTCCTCGTGTACCTGCTCCATTGGTTCCAGCACTCCCTGCCCCAAGACAATCACATGGTGGCCGGAATGCACTTACGGATTGGACTGAGCATGAGACATTTGTTTTACTAGATGCTTGGGGTGACCGGTTTCTTCGGCGTGGGAAAAAGAGTCTTCGCTCTGAGGAGTGGCAAGAGGTTGCAGAGAAGGTGTCAGAGGTGTCAAAGATTGAAAGGACAGACACTCAGTGTCGTAATCGATTGGATACCCTGAAGAAGAAGTACAAAAAGGAGAGGGTCAAATTTGCAGAGACTGGAGGTGCTATTAGCAAGTGGGTATATTTCAAGAAGATGGACATGTTAATGTCATCACCACAACAGCAGGCTGGTCTCTCTTGTGGTTTGGACTCAGGAGAGTATGTTTTCATGAACCCTAGAGTGTATTTGAACCGTGCAAACGGGTTAGATGAGATGAGGGATAGTCCAGGGAATTCAGAATCTGCTGAGGGAGTGGAGGATGAGTCGGATGGGCTACCACCCAAGAAGAGAAGGTTTGGAAGGGACAATGATGAGCGATCTTCCTTTAGATTGCTTGCTGATTCTATTCAGAAATTCAGTGACATATATGAGAAGATTGAAAAAAGTAAAAGGCAGCAGATGGTAGAGCTAGAGAAGATGAGGATGGATTTCCATAGGGATTTGGAAATGCAGAAAAGGCAGATTATGGAGAGAGCACAGGCTGAAATTGCGAAAATGCGGCAGGCTGATGATGAGGAGAATGATGTGTCTGCTGAAAATGCTAGTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

391

Amino Acids

44.92

Weight (kDa)

4.73

Isoelectric Point (pI)

56.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	156 - 243	2.7e-19	Myb/SANT-like DNA-binding domain
MADF_DNA_bdg	PF10545	178 - 241	3.5e-06	Alcohol dehydrogenase transcription factor Myb/SANT-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24490
fragaria_vesca	FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_6g31095 FvH4_6g31095
malus_domestica	MD09G1212700.v1.1 MD15G1188000.v1.1 MD17G1195600.v1.1
prunus_persica	Prupe.3G071500_v2.0.a1 Prupe.3G071500_v2.0.a1 Prupe.7G228600_v2.0.a1
pyrus_communis	pycom09g13040 pycom15g16850 pycom17g20120
rosa_chinensis	RchiOBHm_Chr2g0090791 RchiOBHm_Chr2g0137821
rosa_laevigata	RLG00000016143 RLG00000019678
rosa_multiflora	Rmu_sc0002170.1_g000002 Rmu_ssc0000367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106790 Rroxscaffold_2G00150820
rosa_rugosa	Rorug02G0010500 Rorug02G0346200 Rorug02G0346300
rosa_samantha	Rh2AG056500 Rh2AG393000 Rh2BG055200 Rh2BG400700 Rh2CG057600 Rh2CG379700 Rh2DG056200 Rh2DG415600
rosa_wichuraiana	Rw2G004600 Rw2G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	103, 409
AciI	CCGC	1 cut(s)	1123
AcoI	YGGCCR	1 cut(s)	448
AcsI	RAATTY	4 cut(s)	383, 668, 856, 977
AcuI	CTGAAG	2 cut(s)	33, 659
AdeI	CACNNNGTG	2 cut(s)	446, 615
AfaI	GTAC	2 cut(s)	399, 650
AflIII	ACRYGT	1 cut(s)	723
AgeI	ACCGGT	1 cut(s)	513
AgsI	TTSAA	6 cut(s)	361, 375, 599, 712, 814, 1004
AjnI	CCWGG	1 cut(s)	850
AluBI	AGCT	2 cut(s)	91, 1033
AluI	AGCT	2 cut(s)	91, 1033
Alw21I	GWGCWC	1 cut(s)	1102
Alw26I	GTCTC	3 cut(s)	476, 671, 761
AlwNI	CAGNNNCTG	2 cut(s)	680, 866
AoxI	GGCC	3 cut(s)	119, 181, 448
ApeKI	GCWGC	1 cut(s)	1018
ApoI	RAATTY	4 cut(s)	383, 668, 856, 977
AsiGI	ACCGGT	1 cut(s)	513
Asp700I	GAANNNNTTC	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	354
AsuHPI	GGTGA	5 cut(s)	47, 182, 269, 521, 729
BarI	GAAGNNNNNNTAC	2 cut(s)	632, 664
BauI	CACGAG	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	1102
BbvCI	CCTCAGC	1 cut(s)	870
BbvI	GCAGC	1 cut(s)	1030
BccI	CCATC	4 cut(s)	712, 887, 1018, 1042
BciT130I	CCWGG	1 cut(s)	852
BciVI	GTATCC	2 cut(s)	39, 625
BcoDI	GTCTC	3 cut(s)	476, 671, 761
BfaI	CTAG	5 cut(s)	117, 497, 801, 1034, 1167
BfuAI	ACCTGC	2 cut(s)	103, 409
BfuI	GTATCC	2 cut(s)	39, 625
BisI	GCNGC	2 cut(s)	1019, 1124
BlsI	GCNGC	2 cut(s)	1020, 1125
Bme1390I	CCNGG	1 cut(s)	852
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	852
BmsI	GCATC	2 cut(s)	10, 490
BpiI	GAAGAC	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	702
Bpu10I	CCTNAGC	1 cut(s)	870
Bsa29I	ATCGAT	1 cut(s)	625
BsaI	GGTCTC	1 cut(s)	761
BsaJI	CCNNGG	1 cut(s)	851
BsaWI	WCCGGW	1 cut(s)	513
BsaXI	ACNNNNNCTCC	4 cut(s)	771, 801, 872, 902
Bse118I	RCCGGY	1 cut(s)	513
Bse1I	ACTGG	2 cut(s)	122, 685
BseBI	CCWGG	1 cut(s)	852
BseCI	ATCGAT	1 cut(s)	625
BseDI	CCNNGG	1 cut(s)	851
BseGI	GGATG	9 cut(s)	10, 154, 163, 235, 277, 283, 889, 898, 1053
BseMII	CTCAG	5 cut(s)	465, 540, 626, 789, 861
BseNI	ACTGG	2 cut(s)	122, 685
BseRI	GAGGAG	5 cut(s)	176, 266, 381, 566, 1154
BseXI	GCAGC	1 cut(s)	1030
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	3 cut(s)	121, 183, 450
BshTI	ACCGGT	1 cut(s)	513
BshVI	ATCGAT	1 cut(s)	625
BsiHKAI	GWGCWC	1 cut(s)	1102
BsiSI	CCGG	2 cut(s)	451, 514
BslFI	GGGAC	1 cut(s)	941
BsmAI	GTCTC	3 cut(s)	476, 671, 761
BsmFI	GGGAC	1 cut(s)	941
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	3 cut(s)	121, 183, 450
Bso31I	GGTCTC	1 cut(s)	761
Bsp1286I	GDGCHC	1 cut(s)	1102
Bsp143I	GATC	1 cut(s)	941
BspACI	CCGC	1 cut(s)	1123
BspANI	GGCC	3 cut(s)	121, 183, 450
BspCNI	CTCAG	5 cut(s)	466, 541, 625, 788, 862
BspDI	ATCGAT	1 cut(s)	625
BspHI	TCATGA	1 cut(s)	792
BspLI	GGNNCC	1 cut(s)	414
BspMI	ACCTGC	2 cut(s)	103, 409
BspTNI	GGTCTC	1 cut(s)	761
BsrFI	RCCGGY	1 cut(s)	513
BsrI	ACTGG	2 cut(s)	122, 685
BssAI	RCCGGY	1 cut(s)	513
BssECI	CCNNGG	1 cut(s)	851
BssMI	GATC	1 cut(s)	941
BssSI	CACGAG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	852
Bst4CI	ACNGT	1 cut(s)	818
Bst6I	CTCTTC	2 cut(s)	356, 905
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	3 cut(s)	750, 960, 1128
BstDEI	CTNAG	5 cut(s)	474, 549, 612, 775, 870
BstEII	GGTNACC	1 cut(s)	509
BstF5I	GGATG	9 cut(s)	10, 154, 163, 235, 277, 283, 889, 898, 1053
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	1 cut(s)	944
BstMAI	GTCTC	3 cut(s)	476, 671, 761
BstMBI	GATC	1 cut(s)	941
BstMWI	GCNNNNNNNGC	5 cut(s)	88, 425, 1081, 1112, 1163
BstNI	CCWGG	1 cut(s)	852
BstNSI	RCATGY	1 cut(s)	727
BstPI	GGTNACC	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	850
BstV1I	GCAGC	1 cut(s)	1030
BstV2I	GAAGAC	1 cut(s)	533
Bsu15I	ATCGAT	1 cut(s)	625
BsuI	GTATCC	2 cut(s)	39, 625
BsuRI	GGCC	3 cut(s)	121, 183, 450
BsuTUI	ATCGAT	1 cut(s)	625
BtsCI	GGATG	9 cut(s)	10, 154, 163, 235, 277, 283, 889, 898, 1053
BtsIMutI	CAGTG	3 cut(s)	9, 620, 988
BveI	ACCTGC	2 cut(s)	103, 409
Cac8I	GCNNGC	3 cut(s)	750, 960, 1128
CaiI	CAGNNNCTG	2 cut(s)	680, 866
CciI	TCATGA	1 cut(s)	792
CfoI	GCGC	1 cut(s)	354
Cfr10I	RCCGGY	1 cut(s)	513
ClaI	ATCGAT	1 cut(s)	625
Csp6I	GTAC	2 cut(s)	398, 649
CspAI	ACCGGT	1 cut(s)	513
CviAII	CATG	4 cut(s)	443, 479, 724, 793
CviQI	GTAC	2 cut(s)	398, 649
DdeI	CTNAG	5 cut(s)	474, 549, 612, 775, 870
DpnI	GATC	1 cut(s)	943
DpnII	GATC	1 cut(s)	941
DraIII	CACNNNGTG	2 cut(s)	446, 615
EaeI	YGGCCR	1 cut(s)	448
Eam1104I	CTCTTC	2 cut(s)	356, 905
EarI	CTCTTC	2 cut(s)	356, 905
Eco31I	GGTCTC	1 cut(s)	761
Eco57I	CTGAAG	2 cut(s)	33, 659
Eco91I	GGTNACC	1 cut(s)	509
EcoO65I	GGTNACC	1 cut(s)	509
EcoRI	GAATTC	1 cut(s)	856
EcoRII	CCWGG	1 cut(s)	850
FaeI	CATG	4 cut(s)	446, 482, 727, 796
FaqI	GGGAC	1 cut(s)	941
FatI	CATG	4 cut(s)	442, 478, 723, 792
Fnu4HI	GCNGC	2 cut(s)	1019, 1124
FokI	GGATG	9 cut(s)	17, 161, 170, 242, 284, 290, 896, 905, 1060
Fsp4HI	GCNGC	2 cut(s)	1019, 1124
FspBI	CTAG	5 cut(s)	117, 497, 801, 1034, 1167
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	2 cut(s)	1019, 1124
GsuI	CTGGAG	1 cut(s)	702
HaeIII	GGCC	3 cut(s)	121, 183, 450
HapII	CCGG	2 cut(s)	451, 514
HhaI	GCGC	1 cut(s)	354
Hin1II	CATG	4 cut(s)	446, 482, 727, 796
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HinfI	GANTC	7 cut(s)	52, 71, 538, 773, 863, 887, 965
HpaII	CCGG	2 cut(s)	451, 514
HphI	GGTGA	5 cut(s)	47, 182, 269, 521, 729
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	6 cut(s)	36, 550, 583, 862, 892, 975
Hpy188III	TCNNGA	3 cut(s)	712, 777, 793
Hpy8I	GTNNAC	1 cut(s)	398
HpyAV	CCTTC	5 cut(s)	173, 216, 568, 909, 918
HpyCH4III	ACNGT	1 cut(s)	818
HpyCH4V	TGCA	8 cut(s)	23, 77, 334, 458, 569, 674, 821, 1075
HpyF10VI	GCNNNNNNNGC	5 cut(s)	88, 425, 1081, 1112, 1163
HpyF3I	CTNAG	5 cut(s)	474, 549, 612, 775, 870
Hsp92II	CATG	4 cut(s)	446, 482, 727, 796
HspAI	GCGC	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	941
LmnI	GCTCC	2 cut(s)	394, 409
Lsp1109I	GCAGC	1 cut(s)	1030
LweI	GCATC	2 cut(s)	10, 490
MaeI	CTAG	5 cut(s)	117, 497, 801, 1034, 1167
MaeIII	GTNAC	2 cut(s)	509, 983
MalI	GATC	1 cut(s)	943
MboI	GATC	1 cut(s)	941
MhlI	GDGCHC	1 cut(s)	1102
MluCI	AATT	5 cut(s)	383, 668, 856, 977, 1110
MlyI	GAGTC	3 cut(s)	547, 767, 896
MmeI	TCCRAC	1 cut(s)	870
MroXI	GAANNNNTTC	1 cut(s)	106
MseI	TTAA	2 cut(s)	309, 728
MslI	CAYNNNNRTG	3 cut(s)	135, 219, 728
MspI	CCGG	2 cut(s)	451, 514
MspR9I	CCNGG	1 cut(s)	852
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	1 cut(s)	852
MwoI	GCNNNNNNNGC	5 cut(s)	88, 425, 1081, 1112, 1163
NdeII	GATC	1 cut(s)	941
NlaIII	CATG	4 cut(s)	446, 482, 727, 796
NlaIV	GGNNCC	1 cut(s)	414
NmuCI	GTSAC	2 cut(s)	509, 983
NspI	RCATGY	1 cut(s)	727
PagI	TCATGA	1 cut(s)	792
PciI	ACATGT	1 cut(s)	723
PctI	GAATGC	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	106
PfeI	GAWTC	4 cut(s)	52, 71, 863, 965
PinAI	ACCGGT	1 cut(s)	513
PkrI	GCNGC	2 cut(s)	1020, 1125
PleI	GAGTC	3 cut(s)	546, 767, 895
PpsI	GAGTC	3 cut(s)	546, 767, 895
PscI	ACATGT	1 cut(s)	723
Psp6I	CCWGG	1 cut(s)	850
PspEI	GGTNACC	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	850
PspN4I	GGNNCC	1 cut(s)	414
PstNI	CAGNNNCTG	2 cut(s)	680, 866
RsaI	GTAC	2 cut(s)	399, 650
RsaNI	GTAC	2 cut(s)	398, 649
RseI	CAYNNNNRTG	3 cut(s)	135, 219, 728
SaqAI	TTAA	2 cut(s)	309, 728
SatI	GCNGC	2 cut(s)	1019, 1124
Sau3AI	GATC	1 cut(s)	941
SchI	GAGTC	3 cut(s)	547, 767, 896
ScrFI	CCNGG	1 cut(s)	852
SduI	GDGCHC	1 cut(s)	1102
SfaNI	GCATC	2 cut(s)	10, 490
SmiMI	CAYNNNNRTG	3 cut(s)	135, 219, 728
Sse9I	AATT	5 cut(s)	383, 668, 856, 977, 1110
SsiI	CCGC	1 cut(s)	1123
SspMI	CTAG	5 cut(s)	117, 497, 801, 1034, 1167
StyD4I	CCNGG	1 cut(s)	850
TaaI	ACNGT	1 cut(s)	818
TaqI	TCGA	2 cut(s)	100, 625
TasI	AATT	5 cut(s)	383, 668, 856, 977, 1110
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	1 cut(s)	1126
TfiI	GAWTC	4 cut(s)	52, 71, 863, 965
Tru1I	TTAA	2 cut(s)	309, 728
Tru9I	TTAA	2 cut(s)	309, 728
TscAI	CASTG	3 cut(s)	16, 620, 988
TseFI	GTSAC	2 cut(s)	509, 983
TseI	GCWGC	1 cut(s)	1018
Tsp45I	GTSAC	2 cut(s)	509, 983
TspDTI	ATGAA	5 cut(s)	99, 203, 396, 781, 809
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	3 cut(s)	16, 620, 988
XapI	RAATTY	4 cut(s)	383, 668, 856, 977
XceI	RCATGY	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	106
XspI	CTAG	5 cut(s)	117, 497, 801, 1034, 1167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.