Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002170.1

Orthogroup ID

OG0003047

Physical Location & Seq

Genomic Coordinates Forward (+)

12321 .. 14780

Gene Structure 2460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002170.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

atgcagtctggagaactgggcctgtggttcagctccccttttcttttacacttggattgggcttgggtttggactttttgggaggtagcatgtcttgctcttttaccccgtacttgttcctatgatgttgctatggctgggttgagcgttgcgacgtacaccaagagggttttaggcgtcaagatgttcagaacagtgaaatctccggaaagtttcgatctttctagtccgcaaagacttggtcttttttcagttgtagatgatgatgattgcagtgattcatggacttggctaatttattgtgtggaaatggatgacactgaagatgatgcaaggtatcctccgaatgtgtatggtgcgaatcacccacagggctatgattctgcacagcccccgaagctacctgctcgaagtggttcattttctaggccagttagtcattatgatgacgatgaggatgatgaggatgaggaggatgaggagttgggtgaggaagaaggccacaatggtcaaaatggttatccttctgttcataaagatgttggggatgatgacgatgacgatgatgaggagggtgatgatgatgaggatgaggatgacgaagaagatgataagagcaaagtctttaagaggattgacgatgatgatttgcaaaagcacccaaagaagcgcaagttgaagagtttgatttcaagttatgaatttgctcctcgtgtacctgctccattggttccagcactccctgccccaagacaatcacatggtggccggaatgcacttacggattggactgagcatgagacatttgttttacttgatgcttggggtgaccggtttcttcggcgtgggaaaaagagtcttcgctctgaggagtggcaagaggttgcagagaaggtgtcagaggtgtcaaagattgaaaggacagacactcagtgtcgtaatcgattggataccctgaagaagaagtacaaaaaggagagggtcaaatttgcagagactggaggtgctattagcaagtgggtatatttcaagaagatggacatgttaatgtcatcaccacaacagcaggctggtctctcttgtggtttggactcaggagagtatgttttcatgaaccctagagtgtatttgaaccgtgcaaacgggttagatgagatgagggatagtccagggaattcagaatctgctgagggagtggaggatgagtcggatgggctaccacccaagaagagaaggtttggaagggacaatgatgagcgatcttcctttagattgcttgctgattctattcagaaattcagtgacatatatgagaagattgaaaaaagtaaaaggcagcagatggtagagctagagaagatgaggatggatttccatagggatttggaaatgcagaaaaggcagattatggagagagcacaggctgaaattgcgaaaatgcggcaggctgatgatgaggagaatgatgtgtctgctgaaaatgctagtgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

497

Amino Acids

57.05

Weight (kDa)

4.66

Isoelectric Point (pI)

55.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24490
fragaria_vesca	FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_6g31095 FvH4_6g31095
malus_domestica	MD09G1212700.v1.1 MD15G1188000.v1.1 MD17G1195600.v1.1
prunus_persica	Prupe.3G071500_v2.0.a1 Prupe.3G071500_v2.0.a1 Prupe.7G228600_v2.0.a1
pyrus_communis	pycom09g13040 pycom15g16850 pycom17g20120
rosa_chinensis	RchiOBHm_Chr2g0090791 RchiOBHm_Chr2g0137821
rosa_laevigata	RLG00000016143 RLG00000019678
rosa_multiflora	Rmu_sc0002170.1_g000002 Rmu_ssc0000367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106790 Rroxscaffold_2G00150820
rosa_rugosa	Rorug02G0010500 Rorug02G0346200 Rorug02G0346300
rosa_samantha	Rh2AG056500 Rh2AG393000 Rh2BG055200 Rh2BG400700 Rh2CG057600 Rh2CG379700 Rh2DG056200 Rh2DG415600
rosa_wichuraiana	Rw2G004600 Rw2G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	412, 727
AccIII	TCCGGA	1 cut(s)	205
AciI	CCGC	2 cut(s)	230, 1441
AcoI	YGGCCR	1 cut(s)	766
AcsI	RAATTY	4 cut(s)	701, 986, 1174, 1295
AcuI	CTGAAG	2 cut(s)	342, 977
AcyI	GRCGYC	1 cut(s)	177
AdeI	CACNNNGTG	2 cut(s)	764, 933
AfaI	GTAC	4 cut(s)	112, 158, 717, 968
AflIII	ACRYGT	1 cut(s)	1041
AgeI	ACCGGT	1 cut(s)	831
AgsI	TTSAA	6 cut(s)	679, 693, 917, 1030, 1132, 1322
AjnI	CCWGG	1 cut(s)	1168
AluBI	AGCT	3 cut(s)	33, 400, 1351
AluI	AGCT	3 cut(s)	33, 400, 1351
Alw21I	GWGCWC	1 cut(s)	1420
Alw26I	GTCTC	3 cut(s)	794, 989, 1079
AlwNI	CAGNNNCTG	2 cut(s)	998, 1184
Aor13HI	TCCGGA	1 cut(s)	205
AoxI	GGCC	4 cut(s)	19, 428, 499, 766
ApeKI	GCWGC	1 cut(s)	1336
ApoI	RAATTY	4 cut(s)	701, 986, 1174, 1295
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AsiGI	ACCGGT	1 cut(s)	831
Asp700I	GAANNNNTTC	1 cut(s)	415
AspLEI	GCGC	1 cut(s)	672
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	5 cut(s)	356, 500, 587, 839, 1047
BarI	GAAGNNNNNNTAC	2 cut(s)	950, 982
BauI	CACGAG	1 cut(s)	711
BbsI	GAAGAC	1 cut(s)	851
Bbv12I	GWGCWC	1 cut(s)	1420
BbvCI	CCTCAGC	1 cut(s)	1188
BbvI	GCAGC	1 cut(s)	1348
BccI	CCATC	4 cut(s)	1030, 1205, 1336, 1360
BciT130I	CCWGG	1 cut(s)	1170
BciVI	GTATCC	2 cut(s)	348, 943
BcoDI	GTCTC	3 cut(s)	794, 989, 1079
BfaI	CTAG	5 cut(s)	225, 426, 1119, 1352, 1485
BfuAI	ACCTGC	2 cut(s)	412, 727
BfuI	GTATCC	2 cut(s)	348, 943
BisI	GCNGC	2 cut(s)	1337, 1442
BlsI	GCNGC	2 cut(s)	1338, 1443
Bme1390I	CCNGG	1 cut(s)	1170
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	732
BmrFI	CCNGG	1 cut(s)	1170
BmrI	ACTGGG	1 cut(s)	26
BmsI	GCATC	2 cut(s)	319, 808
BmuI	ACTGGG	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	851
BpmI	CTGGAG	2 cut(s)	30, 1020
Bpu10I	CCTNAGC	1 cut(s)	1188
Bsa29I	ATCGAT	1 cut(s)	943
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	1079
BsaJI	CCNNGG	1 cut(s)	1169
BsaWI	WCCGGW	2 cut(s)	205, 831
BsaXI	ACNNNNNCTCC	4 cut(s)	1089, 1119, 1190, 1220
Bse118I	RCCGGY	1 cut(s)	831
Bse1I	ACTGG	3 cut(s)	21, 431, 1003
BseAI	TCCGGA	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	1170
BseCI	ATCGAT	1 cut(s)	943
BseDI	CCNNGG	1 cut(s)	1169
BseMII	CTCAG	5 cut(s)	783, 858, 944, 1107, 1179
BseNI	ACTGG	3 cut(s)	21, 431, 1003
BseRI	GAGGAG	6 cut(s)	485, 494, 584, 699, 884, 1472
BseXI	GCAGC	1 cut(s)	1348
BseYI	CCCAGC	1 cut(s)	137
BsgI	GTGCAG	1 cut(s)	369
BshFI	GGCC	4 cut(s)	21, 430, 501, 768
BshTI	ACCGGT	1 cut(s)	831
BshVI	ATCGAT	1 cut(s)	943
BsiHKAI	GWGCWC	1 cut(s)	1420
BsiSI	CCGG	3 cut(s)	206, 769, 832
BslFI	GGGAC	1 cut(s)	1259
BsmAI	GTCTC	3 cut(s)	794, 989, 1079
BsmFI	GGGAC	1 cut(s)	1259
BsmI	GAATGC	1 cut(s)	778
BsnI	GGCC	4 cut(s)	21, 430, 501, 768
Bso31I	GGTCTC	1 cut(s)	1079
Bsp1286I	GDGCHC	1 cut(s)	1420
Bsp13I	TCCGGA	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	217, 1259
BspACI	CCGC	2 cut(s)	230, 1441
BspANI	GGCC	4 cut(s)	21, 430, 501, 768
BspCNI	CTCAG	5 cut(s)	784, 859, 943, 1106, 1180
BspDI	ATCGAT	1 cut(s)	943
BspEI	TCCGGA	1 cut(s)	205
BspHI	TCATGA	1 cut(s)	1110
BspLI	GGNNCC	1 cut(s)	732
BspMI	ACCTGC	2 cut(s)	412, 727
BspTNI	GGTCTC	1 cut(s)	1079
BsrFI	RCCGGY	1 cut(s)	831
BsrI	ACTGG	3 cut(s)	21, 431, 1003
BssAI	RCCGGY	1 cut(s)	831
BssECI	CCNNGG	1 cut(s)	1169
BssMI	GATC	2 cut(s)	217, 1259
BssNI	GRCGYC	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	711
Bst2BI	CACGAG	1 cut(s)	711
Bst2UI	CCWGG	1 cut(s)	1170
Bst4CI	ACNGT	2 cut(s)	196, 1136
Bst6I	CTCTTC	2 cut(s)	674, 1223
BstACI	GRCGYC	1 cut(s)	177
BstAPI	GCANNNNNTGC	2 cut(s)	95, 743
BstC8I	GCNNGC	3 cut(s)	1068, 1278, 1446
BstDEI	CTNAG	5 cut(s)	792, 867, 930, 1093, 1188
BstEII	GGTNACC	1 cut(s)	827
BstHHI	GCGC	1 cut(s)	672
BstKTI	GATC	2 cut(s)	220, 1262
BstMAI	GTCTC	3 cut(s)	794, 989, 1079
BstMBI	GATC	2 cut(s)	217, 1259
BstMWI	GCNNNNNNNGC	6 cut(s)	95, 397, 743, 1399, 1430, 1481
BstNI	CCWGG	1 cut(s)	1170
BstNSI	RCATGY	2 cut(s)	93, 1045
BstPI	GGTNACC	1 cut(s)	827
BstSCI	CCNGG	1 cut(s)	1168
BstV1I	GCAGC	1 cut(s)	1348
BstV2I	GAAGAC	1 cut(s)	851
Bsu15I	ATCGAT	1 cut(s)	943
BsuI	GTATCC	2 cut(s)	348, 943
BsuRI	GGCC	4 cut(s)	21, 430, 501, 768
BsuTUI	ATCGAT	1 cut(s)	943
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	5 cut(s)	201, 280, 318, 938, 1306
BveI	ACCTGC	2 cut(s)	412, 727
Cac8I	GCNNGC	3 cut(s)	1068, 1278, 1446
CaiI	CAGNNNCTG	2 cut(s)	998, 1184
CciI	TCATGA	1 cut(s)	1110
CfoI	GCGC	1 cut(s)	672
Cfr10I	RCCGGY	1 cut(s)	831
Cfr13I	GGNCC	1 cut(s)	19
ClaI	ATCGAT	1 cut(s)	943
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	4 cut(s)	111, 157, 716, 967
CspAI	ACCGGT	1 cut(s)	831
CviAII	CATG	6 cut(s)	90, 282, 761, 797, 1042, 1111
CviQI	GTAC	4 cut(s)	111, 157, 716, 967
DdeI	CTNAG	5 cut(s)	792, 867, 930, 1093, 1188
DpnI	GATC	2 cut(s)	219, 1261
DpnII	GATC	2 cut(s)	217, 1259
DraIII	CACNNNGTG	2 cut(s)	764, 933
EaeI	YGGCCR	1 cut(s)	766
Eam1104I	CTCTTC	2 cut(s)	674, 1223
EarI	CTCTTC	2 cut(s)	674, 1223
Eco31I	GGTCTC	1 cut(s)	1079
Eco57I	CTGAAG	2 cut(s)	342, 977
Eco91I	GGTNACC	1 cut(s)	827
EcoO65I	GGTNACC	1 cut(s)	827
EcoRI	GAATTC	1 cut(s)	1174
EcoRII	CCWGG	1 cut(s)	1168
FaeI	CATG	6 cut(s)	93, 285, 764, 800, 1045, 1114
FaqI	GGGAC	1 cut(s)	1259
FatI	CATG	6 cut(s)	89, 281, 760, 796, 1041, 1110
Fnu4HI	GCNGC	2 cut(s)	1337, 1442
Fsp4HI	GCNGC	2 cut(s)	1337, 1442
FspBI	CTAG	5 cut(s)	225, 426, 1119, 1352, 1485
GlaI	GCGC	1 cut(s)	671
GluI	GCNGC	2 cut(s)	1337, 1442
GsaI	CCCAGC	1 cut(s)	141
GsuI	CTGGAG	2 cut(s)	30, 1020
HaeIII	GGCC	4 cut(s)	21, 430, 501, 768
HapII	CCGG	3 cut(s)	206, 769, 832
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	672
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	6 cut(s)	93, 285, 764, 800, 1045, 1114
Hin6I	GCGC	1 cut(s)	670
HinP1I	GCGC	1 cut(s)	670
HinfI	GANTC	8 cut(s)	278, 361, 380, 856, 1091, 1181, 1205, 1283
HpaII	CCGG	3 cut(s)	206, 769, 832
HphI	GGTGA	5 cut(s)	356, 500, 587, 839, 1047
Hpy166II	GTNNAC	2 cut(s)	159, 716
Hpy188I	TCNGA	7 cut(s)	191, 345, 868, 901, 1180, 1210, 1293
Hpy188III	TCNNGA	6 cut(s)	9, 181, 206, 1030, 1095, 1111
Hpy8I	GTNNAC	2 cut(s)	159, 716
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	5 cut(s)	491, 534, 886, 1227, 1236
HpyCH4III	ACNGT	2 cut(s)	196, 1136
HpyCH4IV	ACGT	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	6 cut(s)	95, 397, 743, 1399, 1430, 1481
HpyF3I	CTNAG	5 cut(s)	792, 867, 930, 1093, 1188
HpySE526I	ACGT	1 cut(s)	155
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	6 cut(s)	93, 285, 764, 800, 1045, 1114
HspAI	GCGC	1 cut(s)	670
Kpn2I	TCCGGA	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	217, 1259
LmnI	GCTCC	3 cut(s)	38, 712, 727
Lsp1109I	GCAGC	1 cut(s)	1348
LweI	GCATC	2 cut(s)	319, 808
MaeI	CTAG	5 cut(s)	225, 426, 1119, 1352, 1485
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	2 cut(s)	827, 1301
MalI	GATC	2 cut(s)	219, 1261
MboI	GATC	2 cut(s)	217, 1259
MhlI	GDGCHC	1 cut(s)	1420
MluCI	AATT	6 cut(s)	294, 701, 986, 1174, 1295, 1428
MlyI	GAGTC	3 cut(s)	865, 1085, 1214
MmeI	TCCRAC	1 cut(s)	1188
MroI	TCCGGA	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	415
MseI	TTAA	2 cut(s)	627, 1046
MslI	CAYNNNNRTG	3 cut(s)	444, 537, 1046
MspI	CCGG	3 cut(s)	206, 769, 832
MspR9I	CCNGG	1 cut(s)	1170
Mva1269I	GAATGC	1 cut(s)	778
MvaI	CCWGG	1 cut(s)	1170
MwoI	GCNNNNNNNGC	6 cut(s)	95, 397, 743, 1399, 1430, 1481
NdeII	GATC	2 cut(s)	217, 1259
NlaIII	CATG	6 cut(s)	93, 285, 764, 800, 1045, 1114
NlaIV	GGNNCC	1 cut(s)	732
NmuCI	GTSAC	2 cut(s)	827, 1301
NspI	RCATGY	2 cut(s)	93, 1045
PagI	TCATGA	1 cut(s)	1110
PciI	ACATGT	1 cut(s)	1041
PctI	GAATGC	1 cut(s)	778
PdmI	GAANNNNTTC	1 cut(s)	415
PfeI	GAWTC	5 cut(s)	278, 361, 380, 1181, 1283
PflFI	GACNNNGTC	1 cut(s)	240
PinAI	ACCGGT	1 cut(s)	831
PkrI	GCNGC	2 cut(s)	1338, 1443
PleI	GAGTC	3 cut(s)	864, 1085, 1213
PpsI	GAGTC	3 cut(s)	864, 1085, 1213
PscI	ACATGT	1 cut(s)	1041
Psp6I	CCWGG	1 cut(s)	1168
PspEI	GGTNACC	1 cut(s)	827
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	1168
PspN4I	GGNNCC	1 cut(s)	732
PspPI	GGNCC	1 cut(s)	19
PstNI	CAGNNNCTG	2 cut(s)	998, 1184
PsyI	GACNNNGTC	1 cut(s)	240
RsaI	GTAC	4 cut(s)	112, 158, 717, 968
RsaNI	GTAC	4 cut(s)	111, 157, 716, 967
RseI	CAYNNNNRTG	3 cut(s)	444, 537, 1046
SaqAI	TTAA	2 cut(s)	627, 1046
SatI	GCNGC	2 cut(s)	1337, 1442
Sau3AI	GATC	2 cut(s)	217, 1259
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	3 cut(s)	865, 1085, 1214
ScrFI	CCNGG	1 cut(s)	1170
SduI	GDGCHC	1 cut(s)	1420
SfaNI	GCATC	2 cut(s)	319, 808
SmiMI	CAYNNNNRTG	3 cut(s)	444, 537, 1046
Sse9I	AATT	6 cut(s)	294, 701, 986, 1174, 1295, 1428
SsiI	CCGC	2 cut(s)	230, 1441
SspMI	CTAG	5 cut(s)	225, 426, 1119, 1352, 1485
StyD4I	CCNGG	1 cut(s)	1168
TaaI	ACNGT	2 cut(s)	196, 1136
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	3 cut(s)	216, 409, 943
TasI	AATT	6 cut(s)	294, 701, 986, 1174, 1295, 1428
TatI	WGTACW	1 cut(s)	966
TauI	GCSGC	1 cut(s)	1444
TfiI	GAWTC	5 cut(s)	278, 361, 380, 1181, 1283
Tru1I	TTAA	2 cut(s)	627, 1046
Tru9I	TTAA	2 cut(s)	627, 1046
TscAI	CASTG	5 cut(s)	201, 280, 325, 938, 1306
TseFI	GTSAC	2 cut(s)	827, 1301
TseI	GCWGC	1 cut(s)	1336
Tsp45I	GTSAC	2 cut(s)	827, 1301
TspDTI	ATGAA	6 cut(s)	270, 408, 521, 714, 1099, 1127
TspGWI	ACGGA	1 cut(s)	797
TspRI	CASTG	5 cut(s)	201, 280, 325, 938, 1306
Tth111I	GACNNNGTC	1 cut(s)	240
XapI	RAATTY	4 cut(s)	701, 986, 1174, 1295
XceI	RCATGY	2 cut(s)	93, 1045
XmnI	GAANNNNTTC	1 cut(s)	415
XspI	CTAG	5 cut(s)	225, 426, 1119, 1352, 1485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.