Rroxscaffold_2G00106790
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003047
Physical Location & Seq
Reverse (-)
30362652 .. 30363835
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00106790.1

Sequence Viewer

Length: 966 bp
ATGGATGACACTGAAGATGACGCAAGGTATCCTCCAAATGTGTATGGTGCAAATCACCCACAGGGCTATGATTCTGCACAGCCCCGAAGCTACCTGCTCGAGAGGATTGACGATGATGATTTGCAAAAGCACCCAAAGAAGCGCAAGTTGAAGAGTTTGATTTCAAGTTATGAATTTGCTCCTCGTGTACCTGCTCCATCGGTTCCAGCACTCCCTGCCCCAAGACAATCACATGGTGGCCGGAATGCACTTACAGATTGGACTGAGCATGAGACATTTGTTTTACTAGATGCTTGGGGTGACCGGTTTCTTCGGCGTGGGAAAAAGAGTCTTCGCTCTGAGGAGTGGCAAGAGGTTGCAGAGAAGGTGTCAGAGGTGTCAAAGATTGAAAGGACAGACACACAGTGTCGTAATCGATTGGATACCCTGAAGAAGAAGTACAAAAAGGAGAGGATCAAATTTGCAGAGACTGGAGGTGCTACTAGCAAGTGGGTATATTTCAAGAAGATGGACATGTTAATGTCATCGCCACAACAGCAGGCTGGTCTCTCTTGTGGTTTGGACTCAGGAGAGTTTGTTTTCATGAACCCTAGAGTGTATTTGAACCGTGCAAACGGGTTAGATGAGATGAGGGATAGTCCAGGGAATTCAGAATCTGCTGAGGGAGTGGAGGATGAGTCAGATGGGCTACCACCCAAGAAGAGAAGGTTTGGAAGGGACAATGATGAGCGATCTTCCTTTAGATTGCTTGCTGATTCTATTCAGAAATTCAGTGACATATATGAGAAGATTGAAAAAAGTAAAAGGCAGCAGATGGTAGAGCTAGAGAAGATGAGGATGGATTTCCATAGGGATTTGGAAATGCAGAAAAGGCAGATTATGGAGAGAGCACAGGCTGAAATTGCGAAAATGCGGCAGGCTGATGATGAGGAGAATGATGTGTCTGCTGAAAATGCTAGTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

321

Amino Acids

37.08

Weight (kDa)

6.09

Isoelectric Point (pI)

52.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 86 - 173 2.2e-19 Myb/SANT-like DNA-binding domain
MADF_DNA_bdg PF10545 108 - 171 1.4e-06 Alcohol dehydrogenase transcription factor Myb/SANT-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 102, 199
AciI CCGC 1 cut(s) 913
AclWI GGATC 1 cut(s) 461
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 4 cut(s) 173, 458, 646, 767
AcuI CTGAAG 2 cut(s) 33, 449
AdeI CACNNNGTG 2 cut(s) 236, 405
AfaI GTAC 2 cut(s) 189, 440
AflIII ACRYGT 1 cut(s) 513
AgeI ACCGGT 1 cut(s) 303
AgsI TTSAA 6 cut(s) 151, 165, 389, 502, 604, 794
AjnI CCWGG 1 cut(s) 640
AluBI AGCT 2 cut(s) 90, 823
AluI AGCT 2 cut(s) 90, 823
Alw21I GWGCWC 1 cut(s) 892
Alw26I GTCTC 3 cut(s) 266, 461, 551
AlwI GGATC 1 cut(s) 461
AlwNI CAGNNNCTG 2 cut(s) 470, 656
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 808
ApoI RAATTY 4 cut(s) 173, 458, 646, 767
AsiGI ACCGGT 1 cut(s) 303
AspLEI GCGC 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 47, 311
AvaI CYCGRG 1 cut(s) 98
BarI GAAGNNNNNNTAC 2 cut(s) 422, 454
BauI CACGAG 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 892
BbvCI CCTCAGC 1 cut(s) 660
BbvI GCAGC 1 cut(s) 820
BccI CCATC 5 cut(s) 205, 502, 677, 808, 832
BciT130I CCWGG 1 cut(s) 642
BciVI GTATCC 2 cut(s) 39, 415
BcoDI GTCTC 3 cut(s) 266, 461, 551
BfaI CTAG 5 cut(s) 287, 483, 591, 824, 957
BfuAI ACCTGC 2 cut(s) 102, 199
BfuI GTATCC 2 cut(s) 39, 415
BisI GCNGC 2 cut(s) 809, 914
BlsI GCNGC 2 cut(s) 810, 915
Bme1390I CCNGG 1 cut(s) 642
BmeT110I CYCGRG 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 642
BmsI GCATC 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 323
BpmI CTGGAG 1 cut(s) 492
Bpu10I CCTNAGC 1 cut(s) 660
Bsa29I ATCGAT 1 cut(s) 415
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 1 cut(s) 641
BsaWI WCCGGW 1 cut(s) 303
BsaXI ACNNNNNCTCC 4 cut(s) 561, 591, 662, 692
Bse118I RCCGGY 1 cut(s) 303
Bse1I ACTGG 1 cut(s) 475
BseBI CCWGG 1 cut(s) 642
BseCI ATCGAT 1 cut(s) 415
BseDI CCNNGG 1 cut(s) 641
BseGI GGATG 3 cut(s) 10, 679, 843
BseMII CTCAG 4 cut(s) 255, 330, 579, 651
BseNI ACTGG 1 cut(s) 475
BseRI GAGGAG 3 cut(s) 171, 356, 944
BseXI GCAGC 1 cut(s) 820
BsgI GTGCAG 1 cut(s) 60
BshFI GGCC 1 cut(s) 240
BshTI ACCGGT 1 cut(s) 303
BshVI ATCGAT 1 cut(s) 415
BsiHKAI GWGCWC 1 cut(s) 892
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 2 cut(s) 241, 304
BslFI GGGAC 1 cut(s) 731
BsmAI GTCTC 3 cut(s) 266, 461, 551
BsmFI GGGAC 1 cut(s) 731
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 1 cut(s) 240
Bso31I GGTCTC 1 cut(s) 551
BsoBI CYCGRG 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 892
Bsp143I GATC 2 cut(s) 453, 731
BspACI CCGC 1 cut(s) 913
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 4 cut(s) 256, 331, 578, 652
BspDI ATCGAT 1 cut(s) 415
BspHI TCATGA 1 cut(s) 582
BspLI GGNNCC 1 cut(s) 204
BspMI ACCTGC 2 cut(s) 102, 199
BspPI GGATC 1 cut(s) 461
BspTNI GGTCTC 1 cut(s) 551
BsrFI RCCGGY 1 cut(s) 303
BsrI ACTGG 1 cut(s) 475
BssAI RCCGGY 1 cut(s) 303
BssECI CCNNGG 1 cut(s) 641
BssMI GATC 2 cut(s) 453, 731
BssSI CACGAG 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 2 cut(s) 405, 608
Bst6I CTCTTC 2 cut(s) 146, 695
BstAPI GCANNNNNTGC 1 cut(s) 215
BstC8I GCNNGC 3 cut(s) 540, 750, 918
BstDEI CTNAG 4 cut(s) 264, 339, 565, 660
BstEII GGTNACC 1 cut(s) 299
BstF5I GGATG 3 cut(s) 10, 679, 843
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 2 cut(s) 456, 734
BstMAI GTCTC 3 cut(s) 266, 461, 551
BstMBI GATC 2 cut(s) 453, 731
BstMWI GCNNNNNNNGC 5 cut(s) 215, 535, 871, 902, 953
BstNI CCWGG 1 cut(s) 642
BstNSI RCATGY 1 cut(s) 517
BstPI GGTNACC 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 640
BstV1I GCAGC 1 cut(s) 820
BstV2I GAAGAC 1 cut(s) 323
Bsu15I ATCGAT 1 cut(s) 415
BsuI GTATCC 2 cut(s) 39, 415
BsuRI GGCC 1 cut(s) 240
BsuTUI ATCGAT 1 cut(s) 415
BtgZI GCGATG 1 cut(s) 510
BtsCI GGATG 3 cut(s) 10, 679, 843
BtsIMutI CAGTG 3 cut(s) 9, 410, 778
BveI ACCTGC 2 cut(s) 102, 199
Cac8I GCNNGC 3 cut(s) 540, 750, 918
CaiI CAGNNNCTG 2 cut(s) 470, 656
CciI TCATGA 1 cut(s) 582
CfoI GCGC 1 cut(s) 144
Cfr10I RCCGGY 1 cut(s) 303
ClaI ATCGAT 1 cut(s) 415
CseI GACGC 1 cut(s) 29
Csp6I GTAC 2 cut(s) 188, 439
CspAI ACCGGT 1 cut(s) 303
CviAII CATG 4 cut(s) 233, 269, 514, 583
CviJI RGCY 9 cut(s) 66, 82, 90, 240, 542, 688, 823, 896, 920
CviKI_1 RGCY 9 cut(s) 66, 82, 90, 240, 542, 688, 823, 896, 920
CviQI GTAC 2 cut(s) 188, 439
DdeI CTNAG 4 cut(s) 264, 339, 565, 660
DpnI GATC 2 cut(s) 455, 733
DpnII GATC 2 cut(s) 453, 731
DraIII CACNNNGTG 2 cut(s) 236, 405
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 146, 695
EarI CTCTTC 2 cut(s) 146, 695
Eco31I GGTCTC 1 cut(s) 551
Eco57I CTGAAG 2 cut(s) 33, 449
Eco88I CYCGRG 1 cut(s) 98
Eco91I GGTNACC 1 cut(s) 299
EcoO65I GGTNACC 1 cut(s) 299
EcoRI GAATTC 1 cut(s) 646
EcoRII CCWGG 1 cut(s) 640
FaeI CATG 4 cut(s) 236, 272, 517, 586
FaqI GGGAC 1 cut(s) 731
FatI CATG 4 cut(s) 232, 268, 513, 582
Fnu4HI GCNGC 2 cut(s) 809, 914
FokI GGATG 3 cut(s) 17, 686, 850
Fsp4HI GCNGC 2 cut(s) 809, 914
FspBI CTAG 5 cut(s) 287, 483, 591, 824, 957
GlaI GCGC 1 cut(s) 143
GluI GCNGC 2 cut(s) 809, 914
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 1 cut(s) 240
HapII CCGG 2 cut(s) 241, 304
HgaI GACGC 1 cut(s) 29
HhaI GCGC 1 cut(s) 144
Hin1II CATG 4 cut(s) 236, 272, 517, 586
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HinfI GANTC 6 cut(s) 71, 328, 563, 653, 677, 755
HpaII CCGG 2 cut(s) 241, 304
HphI GGTGA 2 cut(s) 47, 311
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 5 cut(s) 340, 373, 652, 682, 765
Hpy188III TCNNGA 4 cut(s) 100, 502, 567, 583
Hpy8I GTNNAC 1 cut(s) 188
HpyAV CCTTC 3 cut(s) 358, 699, 708
HpyCH4III ACNGT 2 cut(s) 405, 608
HpyCH4V TGCA 8 cut(s) 50, 77, 124, 248, 359, 464, 611, 865
HpyF10VI GCNNNNNNNGC 5 cut(s) 215, 535, 871, 902, 953
HpyF3I CTNAG 4 cut(s) 264, 339, 565, 660
Hsp92II CATG 4 cut(s) 236, 272, 517, 586
HspAI GCGC 1 cut(s) 142
Kzo9I GATC 2 cut(s) 453, 731
LmnI GCTCC 2 cut(s) 184, 199
Lsp1109I GCAGC 1 cut(s) 820
LweI GCATC 1 cut(s) 280
MaeI CTAG 5 cut(s) 287, 483, 591, 824, 957
MaeIII GTNAC 2 cut(s) 299, 773
MalI GATC 2 cut(s) 455, 733
MboI GATC 2 cut(s) 453, 731
MhlI GDGCHC 1 cut(s) 892
MluCI AATT 5 cut(s) 173, 458, 646, 767, 900
MlyI GAGTC 3 cut(s) 337, 557, 686
MseI TTAA 1 cut(s) 518
MslI CAYNNNNRTG 1 cut(s) 518
MspI CCGG 2 cut(s) 241, 304
MspR9I CCNGG 1 cut(s) 642
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 1 cut(s) 642
MwoI GCNNNNNNNGC 5 cut(s) 215, 535, 871, 902, 953
NdeII GATC 2 cut(s) 453, 731
NlaIII CATG 4 cut(s) 236, 272, 517, 586
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 2 cut(s) 299, 773
NspI RCATGY 1 cut(s) 517
PaeR7I CTCGAG 1 cut(s) 98
PagI TCATGA 1 cut(s) 582
PciI ACATGT 1 cut(s) 513
PctI GAATGC 1 cut(s) 250
PfeI GAWTC 3 cut(s) 71, 653, 755
PinAI ACCGGT 1 cut(s) 303
PkrI GCNGC 2 cut(s) 810, 915
PleI GAGTC 3 cut(s) 336, 557, 685
PpsI GAGTC 3 cut(s) 336, 557, 685
PscI ACATGT 1 cut(s) 513
Psp6I CCWGG 1 cut(s) 640
PspEI GGTNACC 1 cut(s) 299
PspGI CCWGG 1 cut(s) 640
PspN4I GGNNCC 1 cut(s) 204
PstNI CAGNNNCTG 2 cut(s) 470, 656
RsaI GTAC 2 cut(s) 189, 440
RsaNI GTAC 2 cut(s) 188, 439
RseI CAYNNNNRTG 1 cut(s) 518
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 2 cut(s) 809, 914
Sau3AI GATC 2 cut(s) 453, 731
SchI GAGTC 3 cut(s) 337, 557, 686
ScrFI CCNGG 1 cut(s) 642
SduI GDGCHC 1 cut(s) 892
SfaNI GCATC 1 cut(s) 280
Sfr274I CTCGAG 1 cut(s) 98
SlaI CTCGAG 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 518
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 5 cut(s) 173, 458, 646, 767, 900
SsiI CCGC 1 cut(s) 913
SspMI CTAG 5 cut(s) 287, 483, 591, 824, 957
StyD4I CCNGG 1 cut(s) 640
TaaI ACNGT 2 cut(s) 405, 608
TaqI TCGA 2 cut(s) 99, 415
TasI AATT 5 cut(s) 173, 458, 646, 767, 900
TatI WGTACW 1 cut(s) 438
TauI GCSGC 1 cut(s) 916
TfiI GAWTC 3 cut(s) 71, 653, 755
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TscAI CASTG 3 cut(s) 16, 410, 778
TseFI GTSAC 2 cut(s) 299, 773
TseI GCWGC 1 cut(s) 808
Tsp45I GTSAC 2 cut(s) 299, 773
TspDTI ATGAA 3 cut(s) 186, 571, 599
TspRI CASTG 3 cut(s) 16, 410, 778
XapI RAATTY 4 cut(s) 173, 458, 646, 767
XceI RCATGY 1 cut(s) 517
XhoI CTCGAG 1 cut(s) 98
XspI CTAG 5 cut(s) 287, 483, 591, 824, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.