Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000367.1

Orthogroup ID

OG0003047

Physical Location & Seq

Genomic Coordinates Reverse (-)

45198 .. 46307

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000367.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atggacgacatggaagacgatgaaaggtaccacccgaaaccctacaaccatcacagctcctcgaatcggcgaaagatccacacccggaacaacccgtattcccgggcacctcccaatcgatacgagccggaaggcgacgacgacgcaatcgacgacgatctggacgaggagaattacggccaagacgacgtcgtcgtggaagagcagtaccagcaccacccgcacgacctgaatcggagcttcgatgcccccgccgagaacggcttcgagtggcacccgaagaagaggaagctgaagaatttggattcgggttacgagttcgcgcctcgggtcaagtttccgggtcgggtcgggtcgagctcggaggagtggacggagcacgcggtgtttgtgctgctggaggtttggggggacaggtttcttgagctggggaggaagagcttgaggtcggaggactggagtgacgtggcggtgaaggtatcggaggggagcaagttggagaggagtgataagcaatgtaggaaaatgctggatatgttgaagaggaagtataagaaggagaaggcgaaagtcgaagaaacagggggttcgagcaagtgggggtatttcaagaagatggaaatgctgatggcctcgaatatgaggcaggaatgtgggttggcttgtggggtggataatggggagtatgtgtttatgaacacgagggtgtatttggagaagtcgaatgggtttgatgagatgagggatagtccaggggagtcagagacggatgaggaggagaatgagagtgagcagaatgggtttgggtttgggattcctccgaggcagggagggggaggggggttggaagggtcttctttccgagtgttggcggattctattcagaagtttggggagatatatgagaatattgagagtagtaagaggcagcagatgatggagttggagaagatgaggagggattttaataaggaaatggagttgcagaagaagcagattcttgagagggcacaggcggagattgccaagattcaggaagcggatgatgaggatgatgatgatggtgatgatgatgactcggatgcttctgctgaagatctgagcgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

369

Amino Acids

42.65

Weight (kDa)

4.71

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24490
fragaria_vesca	FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_6g31095 FvH4_6g31095
malus_domestica	MD09G1212700.v1.1 MD15G1188000.v1.1 MD17G1195600.v1.1
prunus_persica	Prupe.3G071500_v2.0.a1 Prupe.3G071500_v2.0.a1 Prupe.7G228600_v2.0.a1
pyrus_communis	pycom09g13040 pycom15g16850 pycom17g20120
rosa_chinensis	RchiOBHm_Chr2g0090791 RchiOBHm_Chr2g0137821
rosa_laevigata	RLG00000016143 RLG00000019678
rosa_multiflora	Rmu_sc0002170.1_g000002 Rmu_ssc0000367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106790 Rroxscaffold_2G00150820
rosa_rugosa	Rorug02G0010500 Rorug02G0346200 Rorug02G0346300
rosa_samantha	Rh2AG056500 Rh2AG393000 Rh2BG055200 Rh2BG400700 Rh2CG057600 Rh2CG379700 Rh2DG056200 Rh2DG415600
rosa_wichuraiana	Rw2G004600 Rw2G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	191
AatII	GACGTC	1 cut(s)	192
Acc65I	GGTACC	1 cut(s)	27
AccB1I	GGYRCC	3 cut(s)	27, 106, 273
AccII	CGCG	2 cut(s)	323, 383
AciI	CCGC	7 cut(s)	221, 252, 383, 470, 872, 1016, 1040
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	298
AcuI	CTGAAG	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	189
AdeI	CACNNNGTG	1 cut(s)	385
AfaI	GTAC	2 cut(s)	29, 209
AfiI	CCNNNNNNNGG	3 cut(s)	66, 827, 868
AgsI	TTSAA	2 cut(s)	541, 610
AjiI	CACGTC	1 cut(s)	466
AjnI	CCWGG	1 cut(s)	751
AleI	CACNNNNGTG	1 cut(s)	704
AluBI	AGCT	6 cut(s)	57, 240, 292, 360, 427, 441
AluI	AGCT	6 cut(s)	57, 240, 292, 360, 427, 441
Alw21I	GWGCWC	2 cut(s)	362, 381
Alw26I	GTCTC	1 cut(s)	758
AlwI	GGATC	1 cut(s)	70
Ama87I	CYCGRG	2 cut(s)	102, 327
AoxI	GGCC	2 cut(s)	178, 630
ApeKI	GCWGC	2 cut(s)	394, 928
ApoI	RAATTY	1 cut(s)	298
Asp700I	GAANNNNTTC	1 cut(s)	263
Asp718I	GGTACC	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	325
AsuC2I	CCSGG	4 cut(s)	85, 103, 104, 342
AsuHPI	GGTGA	2 cut(s)	484, 1076
AvaI	CYCGRG	2 cut(s)	102, 327
BaeGI	GKGCMC	2 cut(s)	109, 1012
BanI	GGYRCC	3 cut(s)	27, 106, 273
BanII	GRGCYC	1 cut(s)	362
BauI	CACGAG	1 cut(s)	700
BbsI	GAAGAC	2 cut(s)	21, 846
Bbv12I	GWGCWC	2 cut(s)	362, 381
BbvI	GCAGC	2 cut(s)	381, 940
BccI	CCATC	5 cut(s)	57, 610, 622, 931, 1055
BceAI	ACGGC	2 cut(s)	193, 277
BciT130I	CCWGG	1 cut(s)	753
BcnI	CCSGG	4 cut(s)	85, 103, 104, 342
BcoDI	GTCTC	1 cut(s)	758
BglII	AGATCT	1 cut(s)	1096
BisI	GCNGC	2 cut(s)	395, 929
BlsI	GCNGC	2 cut(s)	396, 930
Bme1390I	CCNGG	5 cut(s)	85, 103, 104, 342, 753
BmeT110I	CYCGRG	2 cut(s)	102, 327
BmgBI	CACGTC	1 cut(s)	466
BmiI	GGNNCC	3 cut(s)	29, 108, 275
BmrFI	CCNGG	5 cut(s)	85, 103, 104, 342, 753
BmsI	GCATC	2 cut(s)	235, 1072
BpiI	GAAGAC	2 cut(s)	21, 846
BpmI	CTGGAG	2 cut(s)	419, 478
BpuEI	CTTGAG	3 cut(s)	443, 463, 1022
BpuMI	CCSGG	4 cut(s)	85, 103, 104, 342
Bsa29I	ATCGAT	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	4 cut(s)	102, 326, 752, 821
BsaXI	ACNNNNNCTCC	2 cut(s)	674, 704
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 827, 868
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	753
BseCI	ATCGAT	1 cut(s)	118
BseDI	CCNNGG	4 cut(s)	102, 326, 752, 821
BseGI	GGATG	4 cut(s)	775, 1048, 1057, 1087
BseLI	CCNNNNNNNGG	3 cut(s)	66, 827, 868
BseMI	GCAATG	1 cut(s)	521
BseMII	CTCAG	1 cut(s)	1091
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	7 cut(s)	49, 182, 380, 517, 788, 791, 970
BseSI	GKGCMC	2 cut(s)	109, 1012
BseXI	GCAGC	2 cut(s)	381, 940
BseYI	CCCAGC	1 cut(s)	427
Bsh1236I	CGCG	2 cut(s)	323, 383
BshFI	GGCC	2 cut(s)	180, 632
BshNI	GGYRCC	3 cut(s)	27, 106, 273
BshVI	ATCGAT	1 cut(s)	118
BsiHKAI	GWGCWC	2 cut(s)	362, 381
BsiHKCI	CYCGRG	2 cut(s)	102, 327
BsiSI	CCGG	4 cut(s)	85, 103, 128, 341
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	3 cut(s)	66, 827, 868
BsmAI	GTCTC	1 cut(s)	758
BsmBI	CGTCTC	1 cut(s)	758
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	2 cut(s)	180, 632
BsoBI	CYCGRG	2 cut(s)	102, 327
Bsp1286I	GDGCHC	4 cut(s)	109, 362, 381, 1012
Bsp143I	GATC	3 cut(s)	75, 157, 1096
BspACI	CCGC	7 cut(s)	221, 252, 383, 470, 872, 1016, 1040
BspANI	GGCC	2 cut(s)	180, 632
BspCNI	CTCAG	1 cut(s)	1092
BspDI	ATCGAT	1 cut(s)	118
BspFNI	CGCG	2 cut(s)	323, 383
BspLI	GGNNCC	3 cut(s)	29, 108, 275
BspPI	GGATC	1 cut(s)	70
BspQI	GCTCTTC	2 cut(s)	195, 431
BspT107I	GGYRCC	3 cut(s)	27, 106, 273
BsrDI	GCAATG	1 cut(s)	521
BsrI	ACTGG	1 cut(s)	461
BssECI	CCNNGG	4 cut(s)	102, 326, 752, 821
BssMI	GATC	3 cut(s)	75, 157, 1096
BssNI	GRCGYC	1 cut(s)	189
BssSI	CACGAG	1 cut(s)	700
Bst2BI	CACGAG	1 cut(s)	700
Bst2UI	CCWGG	1 cut(s)	753
Bst6I	CTCTTC	4 cut(s)	195, 278, 431, 536
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	1100
BstF5I	GGATG	4 cut(s)	775, 1048, 1057, 1087
BstFNI	CGCG	2 cut(s)	323, 383
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	3 cut(s)	78, 160, 1099
BstMAI	GTCTC	1 cut(s)	758
BstMBI	GATC	3 cut(s)	75, 157, 1096
BstMWI	GCNNNNNNNGC	4 cut(s)	211, 220, 991, 1022
BstNI	CCWGG	1 cut(s)	753
BstSCI	CCNGG	5 cut(s)	83, 101, 102, 340, 751
BstSLI	GKGCMC	2 cut(s)	109, 1012
BstUI	CGCG	2 cut(s)	323, 383
BstV1I	GCAGC	2 cut(s)	381, 940
BstV2I	GAAGAC	2 cut(s)	21, 846
BstX2I	RGATCY	2 cut(s)	75, 1096
BstYI	RGATCY	2 cut(s)	75, 1096
Bsu15I	ATCGAT	1 cut(s)	118
BsuRI	GGCC	2 cut(s)	180, 632
BsuTUI	ATCGAT	1 cut(s)	118
BtrI	CACGTC	1 cut(s)	466
BtsCI	GGATG	4 cut(s)	775, 1048, 1057, 1087
Cac8I	GCNNGC	1 cut(s)	381
CfoI	GCGC	1 cut(s)	325
Cfr9I	CCCGGG	1 cut(s)	102
ClaI	ATCGAT	1 cut(s)	118
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	28, 208
CviAII	CATG	1 cut(s)	10
CviQI	GTAC	2 cut(s)	28, 208
DdeI	CTNAG	1 cut(s)	1100
DpnI	GATC	3 cut(s)	77, 159, 1098
DpnII	GATC	3 cut(s)	75, 157, 1096
DraIII	CACNNNGTG	1 cut(s)	385
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
EaeI	YGGCCR	1 cut(s)	178
Eam1104I	CTCTTC	4 cut(s)	195, 278, 431, 536
EarI	CTCTTC	4 cut(s)	195, 278, 431, 536
EciI	GGCGGA	2 cut(s)	887, 1031
Ecl136II	GAGCTC	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	362
Eco53kI	GAGCTC	1 cut(s)	360
Eco57I	CTGAAG	1 cut(s)	314
Eco88I	CYCGRG	2 cut(s)	102, 327
EcoICRI	GAGCTC	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	751
EcoT38I	GRGCYC	1 cut(s)	362
Esp3I	CGTCTC	1 cut(s)	758
FaeI	CATG	1 cut(s)	13
FaiI	YATR	8 cut(s)	11, 536, 552, 641, 687, 695, 901, 903
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	1 cut(s)	9
FauI	CCCGC	2 cut(s)	228, 259
Fnu4HI	GCNGC	2 cut(s)	395, 929
FokI	GGATG	4 cut(s)	782, 1055, 1064, 1094
FriOI	GRGCYC	1 cut(s)	362
Fsp4HI	GCNGC	2 cut(s)	395, 929
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	2 cut(s)	395, 929
GsaI	CCCAGC	1 cut(s)	431
GsuI	CTGGAG	2 cut(s)	419, 478
HaeIII	GGCC	2 cut(s)	180, 632
HapII	CCGG	4 cut(s)	85, 103, 128, 341
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	325
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	9 cut(s)	64, 232, 305, 758, 814, 875, 997, 1030, 1076
HpaII	CCGG	4 cut(s)	85, 103, 128, 341
HphI	GGTGA	2 cut(s)	484, 1076
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188III	TCNNGA	5 cut(s)	161, 422, 610, 1001, 1034
Hpy8I	GTNNAC	1 cut(s)	372
Hpy99I	CGWCG	8 cut(s)	140, 143, 146, 155, 158, 191, 194, 197
HpyAV	CCTTC	5 cut(s)	125, 469, 550, 556, 842
HpyCH4IV	ACGT	2 cut(s)	189, 465
HpyCH4V	TGCA	1 cut(s)	985
HpyF10VI	GCNNNNNNNGC	4 cut(s)	211, 220, 991, 1022
HpyF3I	CTNAG	1 cut(s)	1100
HpySE526I	ACGT	2 cut(s)	189, 465
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	1 cut(s)	323
KpnI	GGTACC	1 cut(s)	31
Kzo9I	GATC	3 cut(s)	75, 157, 1096
LguI	GCTCTTC	2 cut(s)	195, 431
LmnI	GCTCC	4 cut(s)	62, 237, 376, 489
Lsp1109I	GCAGC	2 cut(s)	381, 940
LweI	GCATC	2 cut(s)	235, 1072
MaeII	ACGT	2 cut(s)	189, 465
MaeIII	GTNAC	2 cut(s)	311, 461
MalI	GATC	3 cut(s)	77, 159, 1098
MboI	GATC	3 cut(s)	75, 157, 1096
MflI	RGATCY	2 cut(s)	75, 1096
MhlI	GDGCHC	4 cut(s)	109, 362, 381, 1012
MluCI	AATT	2 cut(s)	172, 298
MlyI	GAGTC	2 cut(s)	767, 1070
MmeI	TCCRAC	4 cut(s)	429, 477, 825, 924
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	1 cut(s)	966
MslI	CAYNNNNRTG	1 cut(s)	704
MspI	CCGG	4 cut(s)	85, 103, 128, 341
MspR9I	CCNGG	5 cut(s)	85, 103, 104, 342, 753
MvaI	CCWGG	1 cut(s)	753
MvnI	CGCG	2 cut(s)	323, 383
MwoI	GCNNNNNNNGC	4 cut(s)	211, 220, 991, 1022
NciI	CCSGG	4 cut(s)	85, 103, 104, 342
NdeII	GATC	3 cut(s)	75, 157, 1096
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	3 cut(s)	29, 108, 275
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	461
OliI	CACNNNNGTG	1 cut(s)	704
PciSI	GCTCTTC	2 cut(s)	195, 431
PcsI	WCGNNNNNNNCGW	5 cut(s)	147, 150, 162, 183, 192
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	7 cut(s)	64, 232, 305, 814, 875, 997, 1030
PflFI	GACNNNGTC	2 cut(s)	188, 191
PkrI	GCNGC	2 cut(s)	396, 930
PleI	GAGTC	2 cut(s)	766, 1070
PpsI	GAGTC	2 cut(s)	766, 1070
Psp124BI	GAGCTC	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	751
PspFI	CCCAGC	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	751
PspN4I	GGNNCC	3 cut(s)	29, 108, 275
PsuI	RGATCY	2 cut(s)	75, 1096
PsyI	GACNNNGTC	2 cut(s)	188, 191
RsaI	GTAC	2 cut(s)	29, 209
RsaNI	GTAC	2 cut(s)	28, 208
RseI	CAYNNNNRTG	1 cut(s)	704
SacI	GAGCTC	1 cut(s)	362
SapI	GCTCTTC	2 cut(s)	195, 431
SaqAI	TTAA	1 cut(s)	966
SatI	GCNGC	2 cut(s)	395, 929
Sau3AI	GATC	3 cut(s)	75, 157, 1096
SchI	GAGTC	2 cut(s)	767, 1070
ScrFI	CCNGG	5 cut(s)	85, 103, 104, 342, 753
SduI	GDGCHC	4 cut(s)	109, 362, 381, 1012
SfaNI	GCATC	2 cut(s)	235, 1072
SmaI	CCCGGG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	3 cut(s)	422, 442, 1001
SmoI	CTYRAG	3 cut(s)	422, 442, 1001
Sse9I	AATT	2 cut(s)	172, 298
SsiI	CCGC	7 cut(s)	221, 252, 383, 470, 872, 1016, 1040
SspI	AATATT	1 cut(s)	910
SstI	GAGCTC	1 cut(s)	362
StyD4I	CCNGG	5 cut(s)	83, 101, 102, 340, 751
TaiI	ACGT	2 cut(s)	192, 468
TasI	AATT	2 cut(s)	172, 298
TfiI	GAWTC	7 cut(s)	64, 232, 305, 814, 875, 997, 1030
Tru1I	TTAA	1 cut(s)	966
Tru9I	TTAA	1 cut(s)	966
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	2 cut(s)	394, 928
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	2 cut(s)	36, 710
TspGWI	ACGGA	2 cut(s)	389, 782
TspMI	CCCGGG	1 cut(s)	102
Tth111I	GACNNNGTC	2 cut(s)	188, 191
XapI	RAATTY	1 cut(s)	298
XmaI	CCCGGG	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	263
ZraI	GACGTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.