Rorug02G0346200
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003047
Physical Location & Seq
Forward (+)
43221244 .. 43223995
2752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0346200.1

Sequence Viewer

Length: 435 bp
ATGTCTCAGATATTCTTAGTGGTGCAATTGCAAAGCTCAATGCTCTTTCATCGTCCCCGGCGACAAATCAAGCTGCAGGCTGTGAGCTTTCTTTCTTCCCTACAAATAGTAGCTGTTATATGTACTCTACAAACACTGCCGGACTTCCTGGGCGTTATACTTGACATGAGGTCACTTGAGCTTCTACCTCCTTTAGGGACATTGCCATTCCTTGAAGCGTTGGAAATACAGGGATTGGGAGGGTCAAGCCTCCAAGTTGTAATGGCTGGATTCCCTAAGACCGAATGCCCCCATCCTCAGAACATGGCTGAAGCTCTAGTTGACTTTCTCCAACAGTGTTTGGCTTCCATCACCCTTGACAAGGTTGAAAAAGAGCTGAGAGCGGTCGTAGGTGTTGACAAAGAAGCTGCAAACATCAACCACAATGCAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

144

Amino Acids

15.81

Weight (kDa)

5.28

Isoelectric Point (pI)

64.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 383
AciI CCGC 1 cut(s) 383
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 1 cut(s) 124
AfiI CCNNNNNNNGG 2 cut(s) 194, 361
AgsI TTSAA 2 cut(s) 215, 368
AhdI GACNNNNNGTC 1 cut(s) 169
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 8 cut(s) 36, 73, 87, 113, 181, 314, 376, 407
AluI AGCT 8 cut(s) 36, 73, 87, 113, 181, 314, 376, 407
Alw26I GTCTC 1 cut(s) 9
ApeKI GCWGC 2 cut(s) 73, 407
AsuC2I CCSGG 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 343
BbvI GCAGC 2 cut(s) 60, 394
BccI CCATC 2 cut(s) 300, 356
BciT130I CCWGG 1 cut(s) 149
BcnI CCSGG 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 74
BisI GCNGC 2 cut(s) 74, 408
BlsI GCNGC 2 cut(s) 75, 409
Bme1390I CCNGG 2 cut(s) 58, 149
BmeRI GACNNNNNGTC 1 cut(s) 169
BmrFI CCNGG 2 cut(s) 58, 149
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 56, 148
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 361
Bse3DI GCAATG 1 cut(s) 200
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 56, 148
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 2 cut(s) 194, 361
BseMI GCAATG 1 cut(s) 200
BseMII CTCAG 3 cut(s) 20, 311, 368
BseXI GCAGC 2 cut(s) 60, 394
Bsh1285I CGRYCG 1 cut(s) 387
BsiEI CGRYCG 1 cut(s) 387
BsiSI CCGG 2 cut(s) 58, 140
BslFI GGGAC 2 cut(s) 39, 211
BslI CCNNNNNNNGG 2 cut(s) 194, 361
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 2 cut(s) 39, 211
BsmI GAATGC 1 cut(s) 290
BspACI CCGC 1 cut(s) 383
BspCNI CTCAG 3 cut(s) 19, 310, 369
BspMAI CTGCAG 1 cut(s) 78
BsrBI CCGCTC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 56, 148
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 5 cut(s) 6, 16, 276, 297, 377
BstENI CCTNNNNNAGG 2 cut(s) 192, 359
BstF5I GGATG 1 cut(s) 292
BstMAI GTCTC 1 cut(s) 9
BstMCI CGRYCG 1 cut(s) 387
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 2 cut(s) 56, 147
BstSFI CTRYAG 1 cut(s) 74
BstV1I GCAGC 2 cut(s) 60, 394
BtsCI GGATG 1 cut(s) 292
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 2 cut(s) 134, 341
Cac8I GCNNGC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 123
CviAII CATG 2 cut(s) 166, 304
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 5 cut(s) 6, 16, 276, 297, 377
DriI GACNNNNNGTC 1 cut(s) 169
Eam1105I GACNNNNNGTC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 330
EcoNI CCTNNNNNAGG 2 cut(s) 192, 359
EcoRII CCWGG 1 cut(s) 147
FaeI CATG 2 cut(s) 169, 307
FaiI YATR 5 cut(s) 119, 121, 158, 167, 305
FaqI GGGAC 2 cut(s) 39, 211
FatI CATG 2 cut(s) 165, 303
Fnu4HI GCNGC 2 cut(s) 74, 408
FokI GGATG 1 cut(s) 279
Fsp4HI GCNGC 2 cut(s) 74, 408
FspBI CTAG 1 cut(s) 317
GluI GCNGC 2 cut(s) 74, 408
HapII CCGG 2 cut(s) 58, 140
Hin1II CATG 2 cut(s) 169, 307
HincII GTYRAC 2 cut(s) 322, 397
HindII GTYRAC 2 cut(s) 322, 397
HinfI GANTC 1 cut(s) 270
HpaII CCGG 2 cut(s) 58, 140
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 2 cut(s) 322, 397
Hpy188I TCNGA 2 cut(s) 9, 300
Hpy8I GTNNAC 2 cut(s) 322, 397
HpyCH4III ACNGT 1 cut(s) 336
HpyCH4V TGCA 5 cut(s) 25, 31, 76, 410, 428
HpyF3I CTNAG 5 cut(s) 6, 16, 276, 297, 377
Hsp92II CATG 2 cut(s) 169, 307
LpnPI CCDG 7 cut(s) 62, 71, 134, 153, 161, 215, 252
Lsp1109I GCAGC 2 cut(s) 60, 394
MaeI CTAG 1 cut(s) 317
MaeIII GTNAC 1 cut(s) 171
MbiI CCGCTC 1 cut(s) 383
MboII GAAGA 1 cut(s) 87
MfeI CAATTG 1 cut(s) 26
MluCI AATT 1 cut(s) 26
MmeI TCCRAC 2 cut(s) 201, 355
MnlI CCTC 5 cut(s) 162, 198, 233, 260, 306
MspI CCGG 2 cut(s) 58, 140
MspR9I CCNGG 2 cut(s) 58, 149
MunI CAATTG 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 290
MvaI CCWGG 1 cut(s) 149
NciI CCSGG 1 cut(s) 58
NlaIII CATG 2 cut(s) 169, 307
NmuCI GTSAC 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 58
PctI GAATGC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 270
PkrI GCNGC 2 cut(s) 75, 409
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PstI CTGCAG 1 cut(s) 78
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SatI GCNGC 2 cut(s) 74, 408
ScrFI CCNGG 2 cut(s) 58, 149
SfcI CTRYAG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 1 cut(s) 26
SsiI CCGC 1 cut(s) 383
SspMI CTAG 1 cut(s) 317
StyD4I CCNGG 2 cut(s) 56, 147
TaaI ACNGT 1 cut(s) 336
TaqII GACCGA 1 cut(s) 296
TasI AATT 1 cut(s) 26
TatI WGTACW 1 cut(s) 122
TfiI GAWTC 1 cut(s) 270
TscAI CASTG 2 cut(s) 141, 341
TseFI GTSAC 1 cut(s) 171
TseI GCWGC 2 cut(s) 73, 407
Tsp45I GTSAC 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 38
TspRI CASTG 2 cut(s) 141, 341
XagI CCTNNNNNAGG 2 cut(s) 192, 359
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.