Rw2G004600
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003047
Physical Location & Seq
Forward (+)
4347812 .. 4348920
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G004600.1

Sequence Viewer

Length: 1071 bp
ATGGACGACATGGAAGACGATGAAAGGTACCACCCGAAACCCTACAACCATCACAGCTCCTCGAATCGGCGAAAGATCCACACCCGGAACAACCCGTATTCTCGGGCACTCCCAATCGATACGAGCCGGAAGAATTACGGCCAAGACGACGTCGTCGTGGAAGAGCAGTACCAGCACCACCCGCACGACCTGAATCGGACCTTCGACGCCCCCGCCGAGAACGGCTTCGAGTGGCACCCGAAGAAGAGGAAGCTGAAGAATTTTGATTCGGGTTACGAGTTCGCGCCTCGGGTCAAGTTTCCGGGTCGGGTCGGGTCGAGCTCGGAGGAGTGGACTGAGCACGCGGTGTTTGTGCTGCTGGAGGTTTGGGGGGACAGGTTTCTTGAGCTGGGGAGGAAGAGCTTGAGGTCGGAGGACTGGAGTGACGTGGCGGTGAAGGTATCGGAGGGGAGCAAGTTGGAGAGGAGTGATAAGCAATGTAGGAAAATGCTGGATATGCTGAAGAGGAAGTATAAGAAGGAGAAGGCGAAAGTCGAAGAAACAGGGGGTTCGAGCAAGTGGGGGTATTTCAAGAAGATGGAAATGCTGATGGCCTCGAATATGAGGCAGGAATGTGGGTTGGCTTGTGGGGTGGATAATGGGGAGTATGTGTTTATGAACACGAGGGTGTATTTGGAGAAGTCGAATGGGTTTGATGAGATGAGGGATAGTCCAGGGGAGTCAGAGACGGATGAGGAGGAGAATGAGAGTGAGCAGAATGGGTTTGGGTTTGGGATTCCTCCGAGGCAGGGAGGGGGAGGGGGGTTGGAAGGGTCTTCTTTCCGAGTGTTGGCGGATTCTATTCAGAAGTTTGGGGAGATATATGAGAATATTGAGAGTAGTAAGAGGCAGCAGATGATGGAGTTGGAGAAGATGAGGAGGGATTTTAATAAGGAAATGGAGTTGCAGAAGAAGCAGATTCTTGAGAGGGCACAGGCGGAGATTGCCAAGATTCAGGAAGCGGATGATGAGGATGATGATGATGGTGATGATGATGACTCGGATGCTTCTGCTGAAGATCTGAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

356

Amino Acids

41.21

Weight (kDa)

4.98

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 109 - 195 1.6e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AatII GACGTC 1 cut(s) 153
Acc65I GGTACC 1 cut(s) 27
AccB1I GGYRCC 2 cut(s) 27, 234
AccII CGCG 2 cut(s) 284, 344
AciI CCGC 7 cut(s) 182, 213, 344, 431, 833, 977, 1001
AclWI GGATC 1 cut(s) 70
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 1 cut(s) 259
AcuI CTGAAG 2 cut(s) 275, 521
AcyI GRCGYC 2 cut(s) 150, 207
AdeI CACNNNGTG 1 cut(s) 346
AfaI GTAC 2 cut(s) 29, 170
AfiI CCNNNNNNNGG 3 cut(s) 66, 788, 829
AgsI TTSAA 1 cut(s) 571
AjiI CACGTC 1 cut(s) 427
AjnI CCWGG 1 cut(s) 712
AleI CACNNNNGTG 1 cut(s) 665
AluBI AGCT 5 cut(s) 57, 253, 321, 388, 402
AluI AGCT 5 cut(s) 57, 253, 321, 388, 402
Alw21I GWGCWC 2 cut(s) 323, 342
Alw26I GTCTC 1 cut(s) 719
AlwI GGATC 1 cut(s) 70
Ama87I CYCGRG 2 cut(s) 102, 288
AoxI GGCC 2 cut(s) 139, 591
ApeKI GCWGC 2 cut(s) 355, 889
ApoI RAATTY 1 cut(s) 259
Asp700I GAANNNNTTC 1 cut(s) 224
Asp718I GGTACC 1 cut(s) 27
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 1 cut(s) 198
AsuC2I CCSGG 2 cut(s) 85, 303
AsuHPI GGTGA 2 cut(s) 445, 1037
AvaI CYCGRG 2 cut(s) 102, 288
AvaII GGWCC 1 cut(s) 198
BaeGI GKGCMC 2 cut(s) 109, 973
BanI GGYRCC 2 cut(s) 27, 234
BanII GRGCYC 1 cut(s) 323
BauI CACGAG 1 cut(s) 661
BbsI GAAGAC 2 cut(s) 21, 807
Bbv12I GWGCWC 2 cut(s) 323, 342
BbvI GCAGC 2 cut(s) 342, 901
BccI CCATC 5 cut(s) 57, 571, 583, 892, 1016
BceAI ACGGC 2 cut(s) 154, 238
BciT130I CCWGG 1 cut(s) 714
BcnI CCSGG 2 cut(s) 85, 303
BcoDI GTCTC 1 cut(s) 719
BglII AGATCT 1 cut(s) 1057
BisI GCNGC 2 cut(s) 356, 890
BlsI GCNGC 2 cut(s) 357, 891
Bme1390I CCNGG 3 cut(s) 85, 303, 714
Bme18I GGWCC 1 cut(s) 198
BmeT110I CYCGRG 2 cut(s) 102, 288
BmgBI CACGTC 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 2 cut(s) 29, 236
BmrFI CCNGG 3 cut(s) 85, 303, 714
BmsI GCATC 1 cut(s) 1033
BpiI GAAGAC 2 cut(s) 21, 807
BpmI CTGGAG 2 cut(s) 380, 439
BpuEI CTTGAG 3 cut(s) 404, 424, 983
BpuMI CCSGG 2 cut(s) 85, 303
Bsa29I ATCGAT 1 cut(s) 117
BsaHI GRCGYC 2 cut(s) 150, 207
BsaJI CCNNGG 3 cut(s) 287, 713, 782
BsaXI ACNNNNNCTCC 2 cut(s) 635, 665
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 788, 829
Bse1I ACTGG 1 cut(s) 422
Bse3DI GCAATG 1 cut(s) 482
BseBI CCWGG 1 cut(s) 714
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 3 cut(s) 287, 713, 782
BseGI GGATG 4 cut(s) 736, 1009, 1018, 1048
BseLI CCNNNNNNNGG 3 cut(s) 66, 788, 829
BseMI GCAATG 1 cut(s) 482
BseMII CTCAG 2 cut(s) 327, 1052
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 6 cut(s) 49, 341, 478, 749, 752, 931
BseSI GKGCMC 2 cut(s) 109, 973
BseXI GCAGC 2 cut(s) 342, 901
BseYI CCCAGC 1 cut(s) 388
Bsh1236I CGCG 2 cut(s) 284, 344
BshFI GGCC 2 cut(s) 141, 593
BshNI GGYRCC 2 cut(s) 27, 234
BshVI ATCGAT 1 cut(s) 117
BsiHKAI GWGCWC 2 cut(s) 323, 342
BsiHKCI CYCGRG 2 cut(s) 102, 288
BsiSI CCGG 3 cut(s) 85, 127, 302
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 3 cut(s) 66, 788, 829
BsmAI GTCTC 1 cut(s) 719
BsmBI CGTCTC 1 cut(s) 719
BsmFI GGGAC 1 cut(s) 386
BsnI GGCC 2 cut(s) 141, 593
BsoBI CYCGRG 2 cut(s) 102, 288
Bsp1286I GDGCHC 4 cut(s) 109, 323, 342, 973
Bsp143I GATC 2 cut(s) 75, 1057
BspACI CCGC 7 cut(s) 182, 213, 344, 431, 833, 977, 1001
BspANI GGCC 2 cut(s) 141, 593
BspCNI CTCAG 2 cut(s) 328, 1053
BspDI ATCGAT 1 cut(s) 117
BspFNI CGCG 2 cut(s) 284, 344
BspLI GGNNCC 2 cut(s) 29, 236
BspPI GGATC 1 cut(s) 70
BspQI GCTCTTC 2 cut(s) 156, 392
BspT107I GGYRCC 2 cut(s) 27, 234
BsrDI GCAATG 1 cut(s) 482
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 3 cut(s) 287, 713, 782
BssMI GATC 2 cut(s) 75, 1057
BssNI GRCGYC 2 cut(s) 150, 207
BssSI CACGAG 1 cut(s) 661
Bst2BI CACGAG 1 cut(s) 661
Bst2UI CCWGG 1 cut(s) 714
Bst6I CTCTTC 4 cut(s) 156, 239, 392, 497
BstACI GRCGYC 2 cut(s) 150, 207
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 2 cut(s) 336, 1061
BstF5I GGATG 4 cut(s) 736, 1009, 1018, 1048
BstFNI CGCG 2 cut(s) 284, 344
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 2 cut(s) 78, 1060
BstMAI GTCTC 1 cut(s) 719
BstMBI GATC 2 cut(s) 75, 1057
BstMWI GCNNNNNNNGC 5 cut(s) 172, 181, 496, 952, 983
BstNI CCWGG 1 cut(s) 714
BstSCI CCNGG 3 cut(s) 83, 301, 712
BstSLI GKGCMC 2 cut(s) 109, 973
BstUI CGCG 2 cut(s) 284, 344
BstV1I GCAGC 2 cut(s) 342, 901
BstV2I GAAGAC 2 cut(s) 21, 807
BstX2I RGATCY 2 cut(s) 75, 1057
BstYI RGATCY 2 cut(s) 75, 1057
Bsu15I ATCGAT 1 cut(s) 117
BsuRI GGCC 2 cut(s) 141, 593
BsuTUI ATCGAT 1 cut(s) 117
BtrI CACGTC 1 cut(s) 427
BtsCI GGATG 4 cut(s) 736, 1009, 1018, 1048
Cac8I GCNNGC 1 cut(s) 342
CfoI GCGC 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 198
ClaI ATCGAT 1 cut(s) 117
CseI GACGC 1 cut(s) 215
Csp6I GTAC 2 cut(s) 28, 169
CviAII CATG 1 cut(s) 10
CviQI GTAC 2 cut(s) 28, 169
DdeI CTNAG 2 cut(s) 336, 1061
DpnI GATC 2 cut(s) 77, 1059
DpnII GATC 2 cut(s) 75, 1057
DraIII CACNNNGTG 1 cut(s) 346
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 4 cut(s) 156, 239, 392, 497
EarI CTCTTC 4 cut(s) 156, 239, 392, 497
EciI GGCGGA 2 cut(s) 848, 992
Ecl136II GAGCTC 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 321
Eco57I CTGAAG 2 cut(s) 275, 521
Eco88I CYCGRG 2 cut(s) 102, 288
EcoICRI GAGCTC 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 712
EcoT38I GRGCYC 1 cut(s) 323
Esp3I CGTCTC 1 cut(s) 719
FaeI CATG 1 cut(s) 13
FaiI YATR 8 cut(s) 11, 497, 513, 602, 648, 656, 862, 864
FaqI GGGAC 1 cut(s) 386
FatI CATG 1 cut(s) 9
FauI CCCGC 2 cut(s) 189, 220
Fnu4HI GCNGC 2 cut(s) 356, 890
FokI GGATG 4 cut(s) 743, 1016, 1025, 1055
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 2 cut(s) 356, 890
GlaI GCGC 1 cut(s) 285
GluI GCNGC 2 cut(s) 356, 890
GsaI CCCAGC 1 cut(s) 392
GsuI CTGGAG 2 cut(s) 380, 439
HaeIII GGCC 2 cut(s) 141, 593
HapII CCGG 3 cut(s) 85, 127, 302
HgaI GACGC 1 cut(s) 215
HhaI GCGC 1 cut(s) 286
Hin1I GRCGYC 2 cut(s) 150, 207
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HinfI GANTC 9 cut(s) 64, 193, 266, 719, 775, 836, 958, 991, 1037
HpaII CCGG 3 cut(s) 85, 127, 302
HphI GGTGA 2 cut(s) 445, 1037
Hpy166II GTNNAC 1 cut(s) 333
Hpy188III TCNNGA 4 cut(s) 383, 571, 962, 995
Hpy8I GTNNAC 1 cut(s) 333
Hpy99I CGWCG 4 cut(s) 152, 155, 158, 209
HpyAV CCTTC 5 cut(s) 211, 430, 511, 517, 803
HpyCH4IV ACGT 2 cut(s) 150, 426
HpyCH4V TGCA 1 cut(s) 946
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 181, 496, 952, 983
HpyF3I CTNAG 2 cut(s) 336, 1061
HpySE526I ACGT 2 cut(s) 150, 426
Hsp92I GRCGYC 2 cut(s) 150, 207
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 1 cut(s) 284
KpnI GGTACC 1 cut(s) 31
Kzo9I GATC 2 cut(s) 75, 1057
LguI GCTCTTC 2 cut(s) 156, 392
LmnI GCTCC 2 cut(s) 62, 450
Lsp1109I GCAGC 2 cut(s) 342, 901
LweI GCATC 1 cut(s) 1033
MaeII ACGT 2 cut(s) 150, 426
MaeIII GTNAC 2 cut(s) 272, 422
MalI GATC 2 cut(s) 77, 1059
MboI GATC 2 cut(s) 75, 1057
MflI RGATCY 2 cut(s) 75, 1057
MhlI GDGCHC 4 cut(s) 109, 323, 342, 973
MluCI AATT 2 cut(s) 133, 259
MlyI GAGTC 2 cut(s) 728, 1031
MmeI TCCRAC 4 cut(s) 390, 438, 786, 885
MroXI GAANNNNTTC 1 cut(s) 224
MseI TTAA 1 cut(s) 927
MslI CAYNNNNRTG 1 cut(s) 665
MspI CCGG 3 cut(s) 85, 127, 302
MspR9I CCNGG 3 cut(s) 85, 303, 714
MvaI CCWGG 1 cut(s) 714
MvnI CGCG 2 cut(s) 284, 344
MwoI GCNNNNNNNGC 5 cut(s) 172, 181, 496, 952, 983
NciI CCSGG 2 cut(s) 85, 303
NdeII GATC 2 cut(s) 75, 1057
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 2 cut(s) 29, 236
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 422
OliI CACNNNNGTG 1 cut(s) 665
PciSI GCTCTTC 2 cut(s) 156, 392
PcsI WCGNNNNNNNCGW 3 cut(s) 144, 153, 213
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 7 cut(s) 64, 193, 266, 775, 836, 958, 991
PflFI GACNNNGTC 2 cut(s) 149, 152
PkrI GCNGC 2 cut(s) 357, 891
PleI GAGTC 2 cut(s) 727, 1031
PpsI GAGTC 2 cut(s) 727, 1031
Psp124BI GAGCTC 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 712
PspFI CCCAGC 1 cut(s) 388
PspGI CCWGG 1 cut(s) 712
PspN4I GGNNCC 2 cut(s) 29, 236
PspPI GGNCC 1 cut(s) 198
PsuI RGATCY 2 cut(s) 75, 1057
PsyI GACNNNGTC 2 cut(s) 149, 152
RsaI GTAC 2 cut(s) 29, 170
RsaNI GTAC 2 cut(s) 28, 169
RseI CAYNNNNRTG 1 cut(s) 665
SacI GAGCTC 1 cut(s) 323
SapI GCTCTTC 2 cut(s) 156, 392
SaqAI TTAA 1 cut(s) 927
SatI GCNGC 2 cut(s) 356, 890
Sau3AI GATC 2 cut(s) 75, 1057
Sau96I GGNCC 1 cut(s) 198
SchI GAGTC 2 cut(s) 728, 1031
ScrFI CCNGG 3 cut(s) 85, 303, 714
SduI GDGCHC 4 cut(s) 109, 323, 342, 973
SfaNI GCATC 1 cut(s) 1033
SinI GGWCC 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 665
SmlI CTYRAG 3 cut(s) 383, 403, 962
SmoI CTYRAG 3 cut(s) 383, 403, 962
Sse9I AATT 2 cut(s) 133, 259
SsiI CCGC 7 cut(s) 182, 213, 344, 431, 833, 977, 1001
SspI AATATT 1 cut(s) 871
SstI GAGCTC 1 cut(s) 323
StyD4I CCNGG 3 cut(s) 83, 301, 712
TaiI ACGT 2 cut(s) 153, 429
TaqI TCGA 9 cut(s) 62, 117, 204, 228, 317, 534, 551, 596, 683
TasI AATT 2 cut(s) 133, 259
TfiI GAWTC 7 cut(s) 64, 193, 266, 775, 836, 958, 991
Tru1I TTAA 1 cut(s) 927
Tru9I TTAA 1 cut(s) 927
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 2 cut(s) 355, 889
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 2 cut(s) 36, 671
TspGWI ACGGA 1 cut(s) 743
Tth111I GACNNNGTC 2 cut(s) 149, 152
VpaK11BI GGWCC 1 cut(s) 198
XapI RAATTY 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 224
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.