Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003047

Physical Location & Seq

Genomic Coordinates Reverse (-)

11602316 .. 11603512

Gene Structure 1197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g13040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGATGACACCGAAGATGACACAAGGTATCCTCCAAACCTGTATGGTGGGAATCACCAGCAGGGCTATGGTTCTTCACAACGCCAAAAGCTTCCTGCTCGTGGTGGTGTTCCATATCCTAGGCCAGTCGGTAATGACTATGCCGATGATGAGGAGGAAGATGAGACTGATGACGATGAAGAATTGGGTGAGGAAGAAGAAGATAACAATGGTCAAAATGGCTATCCTTCTGTTCATAAAGGTGTTGGGGATGATGATCGCGAGGATGATAGTGATGATGAAGAGGATGAGGATGATGAAGAGGATAATAAGATGATGGTTAGAAGGCTGGATGATGATGATTTGAAAACGCACCCAAAGAAGCGTAAGTTAAAGAGTTTGATTTCAAGTTATGAATTTGCTCCTCGTTTGCCAGCTCCTCCTCCTCCTTCTGCTGCCGCACCCTCTGCTCCAAGACAATCAATTGGTGGTCGGAATGCGCTTACAGATTGGACTGAACGTGAGACTTTTGTGTTACTAGATGCCTGGGGTGACCGGTTCCTTCAACGTGGAAAAAAGAGTCTTCGCTCTGAGGAGTGGCAAGAGGTTGCAGAGAAAGTATCAGAGGTGTCCAAGATTGAAAGGACAGACACACAATGCCGCAATCGGTTGGATACATTGAAGAAAAAGTACAAGAAGGAGAGGGCCAAGTTCGCAGAGTCTGGTGGTGCCACTAGTAAGTGGGTTTACTTCACAAAGATGGATATGTTGATGTCATCGCTACAACAGCAAGCAGGCCTCTCTTGTGGTTTGGACTCAGGGGAGTATGTTTTCATGAACCCTAAAGTGTATTTAAACCGTGCAAATGGGTTGGATGAGATGAGGGATAGTCCAGGGAATTCTGAATCATCTGAGGGAGGGGATGACGATTCAGATGGGCTACCACCCAAGAAGAGAAGGTATGGAAGGGAGAATGATGATCGGGGTTCCTTTAGATTGCTTGCTGATTCCATTCAAAAGTTCAGCGACATATATGAGAAGATTGAAAAGAGTAAAAGGAAGCAGATGGCGGAACTAGAGAAGATGAGGATGGATTTCCACAGAGACTTGGAACAGCAGAAGAGGCAGATTATGGAGAGAGCGCAGGCTGAGATAGCGAAAATACAGCAGGGCGATGACGAGGAGAATGATAACTCTGCCGAAAATGCTAGCGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

399

Amino Acids

45.4

Weight (kDa)

4.66

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	163 - 250	2.5e-19	Myb/SANT-like DNA-binding domain
MADF_DNA_bdg	PF10545	185 - 248	1.6e-06	Alcohol dehydrogenase transcription factor Myb/SANT-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24490
fragaria_vesca	FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_6g31095 FvH4_6g31095
malus_domestica	MD09G1212700.v1.1 MD15G1188000.v1.1 MD17G1195600.v1.1
prunus_persica	Prupe.3G071500_v2.0.a1 Prupe.3G071500_v2.0.a1 Prupe.7G228600_v2.0.a1
pyrus_communis	pycom09g13040 pycom15g16850 pycom17g20120
rosa_chinensis	RchiOBHm_Chr2g0090791 RchiOBHm_Chr2g0137821
rosa_laevigata	RLG00000016143 RLG00000019678
rosa_multiflora	Rmu_sc0002170.1_g000002 Rmu_ssc0000367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106790 Rroxscaffold_2G00150820
rosa_rugosa	Rorug02G0010500 Rorug02G0346200 Rorug02G0346300
rosa_samantha	Rh2AG056500 Rh2AG393000 Rh2BG055200 Rh2BG400700 Rh2CG057600 Rh2CG379700 Rh2DG056200 Rh2DG415600
rosa_wichuraiana	Rw2G004600 Rw2G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	707
AccII	CGCG	1 cut(s)	261
AciI	CCGC	4 cut(s)	438, 640, 1049, 1191
AcsI	RAATTY	2 cut(s)	395, 877
AfaI	GTAC	1 cut(s)	671
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgeI	ACCGGT	1 cut(s)	534
AgsI	TTSAA	7 cut(s)	346, 387, 545, 620, 661, 995, 1025
AhlI	ACTAGT	1 cut(s)	713
AjnI	CCWGG	2 cut(s)	524, 871
AluBI	AGCT	2 cut(s)	91, 416
AluI	AGCT	2 cut(s)	91, 416
Alw26I	GTCTC	3 cut(s)	158, 497, 1077
AlwNI	CAGNNNCTG	1 cut(s)	701
AoxI	GGCC	3 cut(s)	122, 684, 775
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	2 cut(s)	395, 877
AsiGI	ACCGGT	1 cut(s)	534
AspA2I	CCTAGG	1 cut(s)	119
AspLEI	GCGC	2 cut(s)	481, 1123
AspS9I	GGNCC	1 cut(s)	684
AsuHPI	GGTGA	3 cut(s)	47, 200, 542
AsuNHI	GCTAGC	1 cut(s)	1187
AvrII	CCTAGG	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	707
BarI	GAAGNNNNNNTAC	2 cut(s)	653, 685
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	554
BbvI	GCAGC	1 cut(s)	421
BccI	CCATC	5 cut(s)	310, 733, 908, 1039, 1063
BciT130I	CCWGG	2 cut(s)	526, 873
BciVI	GTATCC	2 cut(s)	39, 646
BcoDI	GTCTC	3 cut(s)	158, 497, 1077
BcuI	ACTAGT	1 cut(s)	713
BfaI	CTAG	5 cut(s)	120, 518, 714, 1055, 1188
BfuI	GTATCC	2 cut(s)	39, 646
BisI	GCNGC	3 cut(s)	435, 438, 640
BlnI	CCTAGG	1 cut(s)	119
BlsI	GCNGC	3 cut(s)	436, 439, 641
Bme1390I	CCNGG	2 cut(s)	526, 873
BmgT120I	GGNCC	1 cut(s)	684
BmiI	GGNNCC	3 cut(s)	539, 709, 967
BmrFI	CCNGG	2 cut(s)	526, 873
BmsI	GCATC	1 cut(s)	511
BmtI	GCTAGC	1 cut(s)	1191
BpiI	GAAGAC	1 cut(s)	554
BsaBI	GATNNNNATC	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	119, 525, 872
BsaWI	WCCGGW	1 cut(s)	534
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse118I	RCCGGY	1 cut(s)	534
Bse1I	ACTGG	1 cut(s)	125
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	526, 873
BseDI	CCNNGG	3 cut(s)	119, 525, 872
BseGI	GGATG	9 cut(s)	10, 256, 271, 292, 298, 337, 859, 907, 1074
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	4 cut(s)	561, 810, 882, 1119
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	7 cut(s)	167, 393, 408, 411, 414, 587, 1175
BseXI	GCAGC	1 cut(s)	421
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	3 cut(s)	124, 686, 777
BshNI	GGYRCC	1 cut(s)	707
BshTI	ACCGGT	1 cut(s)	534
BsiSI	CCGG	1 cut(s)	535
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	3 cut(s)	158, 497, 1077
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	3 cut(s)	124, 686, 777
Bsp143I	GATC	2 cut(s)	256, 958
Bsp68I	TCGCGA	1 cut(s)	261
BspACI	CCGC	4 cut(s)	438, 640, 1049, 1191
BspANI	GGCC	3 cut(s)	124, 686, 777
BspCNI	CTCAG	4 cut(s)	562, 809, 883, 1120
BspFNI	CGCG	1 cut(s)	261
BspHI	TCATGA	1 cut(s)	813
BspLI	GGNNCC	3 cut(s)	539, 709, 967
BspOI	GCTAGC	1 cut(s)	1191
BspT107I	GGYRCC	1 cut(s)	707
BsrFI	RCCGGY	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	534
BssECI	CCNNGG	3 cut(s)	119, 525, 872
BssMI	GATC	2 cut(s)	256, 958
BssSI	CACGAG	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	119
Bst2BI	CACGAG	1 cut(s)	99
Bst2UI	CCWGG	2 cut(s)	526, 873
Bst4CI	ACNGT	1 cut(s)	839
Bst6I	CTCTTC	4 cut(s)	276, 294, 926, 1094
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstC8I	GCNNGC	6 cut(s)	414, 771, 775, 981, 1125, 1189
BstDEI	CTNAG	4 cut(s)	570, 796, 891, 1128
BstEII	GGTNACC	1 cut(s)	530
BstF5I	GGATG	9 cut(s)	10, 256, 271, 292, 298, 337, 859, 907, 1074
BstFNI	CGCG	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	481, 1123
BstKTI	GATC	2 cut(s)	259, 961
BstMAI	GTCTC	3 cut(s)	158, 497, 1077
BstMBI	GATC	2 cut(s)	256, 958
BstMWI	GCNNNNNNNGC	6 cut(s)	446, 692, 766, 1102, 1133, 1184
BstNI	CCWGG	2 cut(s)	526, 873
BstPI	GGTNACC	1 cut(s)	530
BstSCI	CCNGG	2 cut(s)	524, 871
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	421
BstV2I	GAAGAC	1 cut(s)	554
BsuI	GTATCC	2 cut(s)	39, 646
BsuRI	GGCC	3 cut(s)	124, 686, 777
BtgZI	GCGATG	2 cut(s)	741, 1167
BtsCI	GGATG	9 cut(s)	10, 256, 271, 292, 298, 337, 859, 907, 1074
BtuMI	TCGCGA	1 cut(s)	261
Cac8I	GCNNGC	6 cut(s)	414, 771, 775, 981, 1125, 1189
CaiI	CAGNNNCTG	1 cut(s)	701
CciI	TCATGA	1 cut(s)	813
CfoI	GCGC	2 cut(s)	481, 1123
Cfr10I	RCCGGY	1 cut(s)	534
Cfr13I	GGNCC	1 cut(s)	684
Csp6I	GTAC	1 cut(s)	670
CspAI	ACCGGT	1 cut(s)	534
CviAII	CATG	1 cut(s)	814
CviQI	GTAC	1 cut(s)	670
DdeI	CTNAG	4 cut(s)	570, 796, 891, 1128
DpnI	GATC	2 cut(s)	258, 960
DpnII	GATC	2 cut(s)	256, 958
DraI	TTTAAA	1 cut(s)	834
Eam1104I	CTCTTC	4 cut(s)	276, 294, 926, 1094
EarI	CTCTTC	4 cut(s)	276, 294, 926, 1094
EciI	GGCGGA	1 cut(s)	1064
Eco130I	CCWWGG	1 cut(s)	119
Eco147I	AGGCCT	1 cut(s)	777
Eco91I	GGTNACC	1 cut(s)	530
EcoO65I	GGTNACC	1 cut(s)	530
EcoRI	GAATTC	1 cut(s)	877
EcoRII	CCWGG	2 cut(s)	524, 871
EcoT14I	CCWWGG	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	1 cut(s)	817
FatI	CATG	1 cut(s)	813
FauI	CCCGC	1 cut(s)	1184
Fnu4HI	GCNGC	3 cut(s)	435, 438, 640
FokI	GGATG	9 cut(s)	17, 263, 278, 299, 305, 344, 866, 914, 1081
Fsp4HI	GCNGC	3 cut(s)	435, 438, 640
FspBI	CTAG	5 cut(s)	120, 518, 714, 1055, 1188
GlaI	GCGC	2 cut(s)	480, 1122
GluI	GCNGC	3 cut(s)	435, 438, 640
HaeIII	GGCC	3 cut(s)	124, 686, 777
HapII	CCGG	1 cut(s)	535
HhaI	GCGC	2 cut(s)	481, 1123
Hin1II	CATG	1 cut(s)	817
Hin6I	GCGC	2 cut(s)	479, 1121
HinP1I	GCGC	2 cut(s)	479, 1121
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	7 cut(s)	52, 559, 698, 794, 884, 908, 986
HpaII	CCGG	1 cut(s)	535
HphI	GGTGA	3 cut(s)	47, 200, 542
Hpy166II	GTNNAC	1 cut(s)	727
Hpy188I	TCNGA	6 cut(s)	474, 571, 604, 883, 892, 913
Hpy188III	TCNNGA	2 cut(s)	260, 814
Hpy8I	GTNNAC	1 cut(s)	727
HpyAV	CCTTC	7 cut(s)	237, 318, 438, 551, 670, 930, 939
HpyCH4III	ACNGT	1 cut(s)	839
HpyCH4IV	ACGT	2 cut(s)	499, 547
HpyCH4V	TGCA	2 cut(s)	590, 842
HpyF10VI	GCNNNNNNNGC	6 cut(s)	446, 692, 766, 1102, 1133, 1184
HpyF3I	CTNAG	4 cut(s)	570, 796, 891, 1128
HpySE526I	ACGT	2 cut(s)	499, 547
Hsp92II	CATG	1 cut(s)	817
HspAI	GCGC	2 cut(s)	479, 1121
Kzo9I	GATC	2 cut(s)	256, 958
LmnI	GCTCC	3 cut(s)	406, 421, 454
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	1 cut(s)	511
MaeI	CTAG	5 cut(s)	120, 518, 714, 1055, 1188
MaeII	ACGT	2 cut(s)	499, 547
MaeIII	GTNAC	2 cut(s)	513, 530
MalI	GATC	2 cut(s)	258, 960
MboI	GATC	2 cut(s)	256, 958
MfeI	CAATTG	1 cut(s)	462
MluCI	AATT	4 cut(s)	182, 395, 462, 877
MlyI	GAGTC	3 cut(s)	568, 707, 788
MmeI	TCCRAC	3 cut(s)	452, 630, 831
MseI	TTAA	2 cut(s)	371, 833
MslI	CAYNNNNRTG	2 cut(s)	240, 737
MspI	CCGG	1 cut(s)	535
MspR9I	CCNGG	2 cut(s)	526, 873
MunI	CAATTG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	2 cut(s)	526, 873
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	6 cut(s)	446, 692, 766, 1102, 1133, 1184
NdeII	GATC	2 cut(s)	256, 958
NheI	GCTAGC	1 cut(s)	1187
NlaIII	CATG	1 cut(s)	817
NlaIV	GGNNCC	3 cut(s)	539, 709, 967
NmuCI	GTSAC	1 cut(s)	530
NruI	TCGCGA	1 cut(s)	261
PagI	TCATGA	1 cut(s)	813
PceI	AGGCCT	1 cut(s)	777
PctI	GAATGC	1 cut(s)	481
PfeI	GAWTC	4 cut(s)	52, 884, 908, 986
PinAI	ACCGGT	1 cut(s)	534
PkrI	GCNGC	3 cut(s)	436, 439, 641
PleI	GAGTC	3 cut(s)	567, 706, 788
PpsI	GAGTC	3 cut(s)	567, 706, 788
Psp6I	CCWGG	2 cut(s)	524, 871
PspEI	GGTNACC	1 cut(s)	530
PspGI	CCWGG	2 cut(s)	524, 871
PspN4I	GGNNCC	3 cut(s)	539, 709, 967
PspPI	GGNCC	1 cut(s)	684
PstNI	CAGNNNCTG	1 cut(s)	701
RruI	TCGCGA	1 cut(s)	261
RsaI	GTAC	1 cut(s)	671
RsaNI	GTAC	1 cut(s)	670
RseI	CAYNNNNRTG	2 cut(s)	240, 737
SaqAI	TTAA	2 cut(s)	371, 833
SatI	GCNGC	3 cut(s)	435, 438, 640
Sau3AI	GATC	2 cut(s)	256, 958
Sau96I	GGNCC	1 cut(s)	684
SchI	GAGTC	3 cut(s)	568, 707, 788
ScrFI	CCNGG	2 cut(s)	526, 873
SfaNI	GCATC	1 cut(s)	511
SmiMI	CAYNNNNRTG	2 cut(s)	240, 737
SpeI	ACTAGT	1 cut(s)	713
Sse9I	AATT	4 cut(s)	182, 395, 462, 877
SseBI	AGGCCT	1 cut(s)	777
SsiI	CCGC	4 cut(s)	438, 640, 1049, 1191
SspMI	CTAG	5 cut(s)	120, 518, 714, 1055, 1188
StuI	AGGCCT	1 cut(s)	777
StyD4I	CCNGG	2 cut(s)	524, 871
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	839
TaiI	ACGT	2 cut(s)	502, 550
TasI	AATT	4 cut(s)	182, 395, 462, 877
TatI	WGTACW	1 cut(s)	669
TauI	GCSGC	2 cut(s)	440, 642
TfiI	GAWTC	4 cut(s)	52, 884, 908, 986
Tru1I	TTAA	2 cut(s)	371, 833
Tru9I	TTAA	2 cut(s)	371, 833
TseFI	GTSAC	1 cut(s)	530
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	530
TspDTI	ATGAA	7 cut(s)	192, 224, 294, 312, 408, 802, 830
XapI	RAATTY	2 cut(s)	395, 877
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XmaJI	CCTAGG	1 cut(s)	119
XspI	CTAG	5 cut(s)	120, 518, 714, 1055, 1188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.