Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003047

Physical Location & Seq

Genomic Coordinates Reverse (-)

20868060 .. 20868907

Gene Structure 848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1212700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGATGATCACGAGGATGATAGTGATGATGAAGAGGATGATGAAGATGATGGTTAGAAGGCTAGATGATGATGATTTGAAAACTCACCCAAAGAAGCGTAAGTTAAAGAGTTTGATTTCAAGTTATGAATTTGATCCTCGTTTGCCAGCTCCTCCTCCTCTTGCCGTTGCACCCTCTGCTCCAAGACAATCAATTGATGCTTGGGGTGACCGGTTCCTTCAACGTGGAAAAAAGAGTCTTCGCTCTGAGGAGTGGCAAGAGGTTGCAGAGAAAGTATCAGAGGTGTCCAAGATTGAAAAGACAGACACACAATGTCGCAATCAGTTGGATAGGTTGAAGAAAAAGTACAAGAAGGAGAGGGCCAAGTTCGCAAAGTCTAGTGGTGCCACTAGTAAGTGGGTTTACTTCACAAAGATGGATATGTTTATGTCATCATTACAACAGCAAGCCGGCCTCTCTTGTGGTTTGGACTCAGGGGAGTATGTTTTCATGAACCCTAAAATGTATTTAAACCGTGCAAATGGGTTGGATGAGATGAGGGATAGTCCAGGGAATTCTGAATCAGCTGAGGGAGGGGATGACGATTCAGATGGGCTACCACCCAAGACGAGAAGGTATGGAAGGGAGAATGATGATCGGGGTTCCTTTAGATTGCTTGCTGATTCCATTCAAAAGTTCAGCGACATACATGAGAAGATTGAAAATAGTAAAAGGAAGCAAATGGTGGAACTAGAGAAGATGAGAATGGATTGCCACAGAGACTTGAACTGCATAAGAGGCAGATTATGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

265

Amino Acids

30.76

Weight (kDa)

9.6

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	65 - 141	8.9e-14	Myb/SANT-like DNA-binding domain
MADF_DNA_bdg	PF10545	77 - 140	4.2e-06	Alcohol dehydrogenase transcription factor Myb/SANT-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24490
fragaria_vesca	FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_6g31095 FvH4_6g31095
malus_domestica	MD09G1212700.v1.1 MD15G1188000.v1.1 MD17G1195600.v1.1
prunus_persica	Prupe.3G071500_v2.0.a1 Prupe.3G071500_v2.0.a1 Prupe.7G228600_v2.0.a1
pyrus_communis	pycom09g13040 pycom15g16850 pycom17g20120
rosa_chinensis	RchiOBHm_Chr2g0090791 RchiOBHm_Chr2g0137821
rosa_laevigata	RLG00000016143 RLG00000019678
rosa_multiflora	Rmu_sc0002170.1_g000002 Rmu_ssc0000367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106790 Rroxscaffold_2G00150820
rosa_rugosa	Rorug02G0010500 Rorug02G0346200 Rorug02G0346300
rosa_samantha	Rh2AG056500 Rh2AG393000 Rh2BG055200 Rh2BG400700 Rh2CG057600 Rh2CG379700 Rh2DG056200 Rh2DG415600
rosa_wichuraiana	Rw2G004600 Rw2G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	383
AclWI	GGATC	1 cut(s)	128
AcsI	RAATTY	2 cut(s)	128, 553
AfaI	GTAC	1 cut(s)	347
AgeI	ACCGGT	1 cut(s)	210
AgsI	TTSAA	8 cut(s)	79, 120, 221, 296, 337, 671, 701, 766
AhlI	ACTAGT	1 cut(s)	389
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	2 cut(s)	149, 566
AluI	AGCT	2 cut(s)	149, 566
Alw26I	GTCTC	1 cut(s)	753
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	2 cut(s)	360, 451
ApoI	RAATTY	2 cut(s)	128, 553
AsiGI	ACCGGT	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	360
AsuHPI	GGTGA	2 cut(s)	77, 218
BanI	GGYRCC	1 cut(s)	383
BarI	GAAGNNNNNNTAC	2 cut(s)	329, 361
BauI	CACGAG	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	230
BbvCI	CCTCAGC	1 cut(s)	567
BccI	CCATC	3 cut(s)	43, 409, 584
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	549
BclI	TGATCA	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	753
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	4 cut(s)	62, 378, 390, 731
Bme1390I	CCNGG	1 cut(s)	549
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	3 cut(s)	215, 385, 643
BmrFI	CCNGG	1 cut(s)	549
BmsI	GCATC	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	230
Bpu10I	CCTNAGC	1 cut(s)	567
BsaJI	CCNNGG	1 cut(s)	548
BsaWI	WCCGGW	1 cut(s)	210
Bse118I	RCCGGY	2 cut(s)	210, 449
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	548
BseGI	GGATG	4 cut(s)	21, 42, 535, 583
BseMII	CTCAG	3 cut(s)	237, 486, 558
BseRI	GAGGAG	4 cut(s)	141, 144, 147, 263
BshFI	GGCC	2 cut(s)	362, 453
BshNI	GGYRCC	1 cut(s)	383
BshTI	ACCGGT	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	211, 450
BsmAI	GTCTC	1 cut(s)	753
BsnI	GGCC	2 cut(s)	362, 453
Bsp143I	GATC	3 cut(s)	6, 133, 634
BspANI	GGCC	2 cut(s)	362, 453
BspCNI	CTCAG	3 cut(s)	238, 485, 559
BspHI	TCATGA	1 cut(s)	489
BspLI	GGNNCC	3 cut(s)	215, 385, 643
BspPI	GGATC	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	383
BsrFI	RCCGGY	2 cut(s)	210, 449
BssAI	RCCGGY	2 cut(s)	210, 449
BssECI	CCNNGG	1 cut(s)	548
BssMI	GATC	3 cut(s)	6, 133, 634
BssSI	CACGAG	1 cut(s)	10
Bst2BI	CACGAG	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	1 cut(s)	515
Bst6I	CTCTTC	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstC8I	GCNNGC	4 cut(s)	147, 447, 451, 657
BstDEI	CTNAG	3 cut(s)	246, 472, 567
BstEII	GGTNACC	1 cut(s)	206
BstF5I	GGATG	4 cut(s)	21, 42, 535, 583
BstKTI	GATC	3 cut(s)	9, 136, 637
BstMAI	GTCTC	1 cut(s)	753
BstMBI	GATC	3 cut(s)	6, 133, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 368, 777
BstNI	CCWGG	1 cut(s)	549
BstPI	GGTNACC	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	547
BstV2I	GAAGAC	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	362, 453
BtsCI	GGATG	4 cut(s)	21, 42, 535, 583
Cac8I	GCNNGC	4 cut(s)	147, 447, 451, 657
CciI	TCATGA	1 cut(s)	489
Cfr10I	RCCGGY	2 cut(s)	210, 449
Cfr13I	GGNCC	1 cut(s)	360
Csp6I	GTAC	1 cut(s)	346
CspAI	ACCGGT	1 cut(s)	210
CviAII	CATG	2 cut(s)	490, 689
CviJI	RGCY	7 cut(s)	61, 149, 362, 449, 453, 566, 595
CviKI_1	RGCY	7 cut(s)	61, 149, 362, 449, 453, 566, 595
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	3 cut(s)	246, 472, 567
DpnI	GATC	3 cut(s)	8, 135, 636
DpnII	GATC	3 cut(s)	6, 133, 634
DraI	TTTAAA	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco91I	GGTNACC	1 cut(s)	206
EcoO65I	GGTNACC	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	547
FaeI	CATG	2 cut(s)	493, 692
FatI	CATG	2 cut(s)	489, 688
FbaI	TGATCA	1 cut(s)	6
FokI	GGATG	4 cut(s)	28, 49, 542, 590
FspBI	CTAG	4 cut(s)	62, 378, 390, 731
HaeIII	GGCC	2 cut(s)	362, 453
HapII	CCGG	2 cut(s)	211, 450
Hin1II	CATG	2 cut(s)	493, 692
HinfI	GANTC	5 cut(s)	235, 470, 560, 584, 662
HpaII	CCGG	2 cut(s)	211, 450
HphI	GGTGA	2 cut(s)	77, 218
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	4 cut(s)	247, 280, 559, 589
Hpy188III	TCNNGA	2 cut(s)	10, 490
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	5 cut(s)	51, 227, 346, 606, 615
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	4 cut(s)	170, 266, 518, 771
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 368, 777
HpyF3I	CTNAG	3 cut(s)	246, 472, 567
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	2 cut(s)	493, 692
KroI	GCCGGC	1 cut(s)	449
KroNI	GCCGGC	1 cut(s)	451
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	6, 133, 634
LmnI	GCTCC	2 cut(s)	154, 184
LpnPI	CCDG	6 cut(s)	159, 224, 459, 463, 534, 561
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	4 cut(s)	62, 378, 390, 731
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	3 cut(s)	8, 135, 636
MboI	GATC	3 cut(s)	6, 133, 634
MboII	GAAGA	6 cut(s)	43, 55, 230, 349, 706, 748
MfeI	CAATTG	1 cut(s)	192
MluCI	AATT	3 cut(s)	128, 192, 553
MlyI	GAGTC	2 cut(s)	244, 464
MmeI	TCCRAC	2 cut(s)	306, 507
MroNI	GCCGGC	1 cut(s)	449
MseI	TTAA	2 cut(s)	104, 509
MslI	CAYNNNNRTG	2 cut(s)	14, 413
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	2 cut(s)	211, 450
MspR9I	CCNGG	1 cut(s)	549
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	3 cut(s)	176, 368, 777
NaeI	GCCGGC	1 cut(s)	451
NdeII	GATC	3 cut(s)	6, 133, 634
NgoMIV	GCCGGC	1 cut(s)	449
NlaIII	CATG	2 cut(s)	493, 692
NlaIV	GGNNCC	3 cut(s)	215, 385, 643
NmuCI	GTSAC	1 cut(s)	206
PagI	TCATGA	1 cut(s)	489
PdiI	GCCGGC	1 cut(s)	451
PfeI	GAWTC	3 cut(s)	560, 584, 662
PinAI	ACCGGT	1 cut(s)	210
PleI	GAGTC	2 cut(s)	243, 464
PpsI	GAGTC	2 cut(s)	243, 464
Psp6I	CCWGG	1 cut(s)	547
PspEI	GGTNACC	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	3 cut(s)	215, 385, 643
PspPI	GGNCC	1 cut(s)	360
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	2 cut(s)	14, 413
SaqAI	TTAA	2 cut(s)	104, 509
Sau3AI	GATC	3 cut(s)	6, 133, 634
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	2 cut(s)	244, 464
ScrFI	CCNGG	1 cut(s)	549
SetI	ASST	7 cut(s)	151, 226, 264, 285, 335, 568, 617
SfaNI	GCATC	1 cut(s)	187
SmiMI	CAYNNNNRTG	2 cut(s)	14, 413
SpeI	ACTAGT	1 cut(s)	389
Sse9I	AATT	3 cut(s)	128, 192, 553
SspMI	CTAG	4 cut(s)	62, 378, 390, 731
StyD4I	CCNGG	1 cut(s)	547
TaaI	ACNGT	1 cut(s)	515
TaiI	ACGT	1 cut(s)	226
TasI	AATT	3 cut(s)	128, 192, 553
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	3 cut(s)	560, 584, 662
Tru1I	TTAA	2 cut(s)	104, 509
Tru9I	TTAA	2 cut(s)	104, 509
TseFI	GTSAC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	5 cut(s)	44, 56, 141, 478, 506
XapI	RAATTY	2 cut(s)	128, 553
XspI	CTAG	4 cut(s)	62, 378, 390, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.