Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003047

Physical Location & Seq

Genomic Coordinates Reverse (-)

23452740 .. 23454781

Gene Structure 2042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1195600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGATGACACAGAAGATGATGCGAGGTATCCTCCTAACCTGTACGGTGGGAATCACCAGCAGGGTTATGGTTCTTCACAACGTCCCAAGCTTCCTGCTCGTGGTGGTGGTCCATATCCTAGGCCAGTCCGTAATGACTATGCTGATGATGATGAGGAAGATGAGACTGATGACGATGAAGAGTTGGGTGAGGAAGAAGAAGATAACAATGGTCGAAATGGTTTTCCTTCTGTTCACAAAGGTGTTGGGGATGATGATCACGGGGATGATAGTGATGATGAAGATGATGAGGATGATGAAGAGGATAATAAGATGATGGTTAGAAGGCTGGATGATGATGATTTGAAAACGCACCCTAAGAAGCGTAAGTTGAAGAGTTTGATTTCAAGTTATGAATTTGCTCCTCGTTTGCCGGCTCCTCCTCCTGCTGCTGCTGCACCCTCTGCTCCAAAACAATCAATTGGTGGCCGGAATGCGCTTACAGATTGGACTGAACATGAGACTTTTGTGTTACTAGATGCTTGGGGTGACCGGTTTCTTCAACGTGGAAAAAAGAGTCTTCGCTCTGAGGAGTGGCAAGAGGTTGCAGAGAAAGTATCAGAGGTGTCAAAAATTGAAAGGACAGACACACAGTGCCGCAATCGGTTGGATACCTTAAAGAAAAAGTACAAAAAGGAGAGGGCCAAGTTCGCAGAGACTGGTGGTGCCACGAGCAAGTGGGTTTACTTCTCAAAGATGGATATGTTGATGTCATCGCTACAACAGCAAGCTGGCCTGTCTTGTGGCTTGGACTCAGGGGAGTATGTTTTCATGAACCCTAAAGTGTATTTGAACCGAGCAAATGGGTTGGATGAGATGAGGGATAGTCCAGGGAATTCAGAATCAGCTGAGGGAGGGGATGACGATTCAGATGGGCTACCACCCAAGAAGAGAAGGTACGGAAGGGAGAATGATGATCGGGGTTCCTTTAGATTGCTTGCTGATTCCATTCAAAAGTTCAGTGACATATATGAGAAGATTGAAAATAGTAAAAGGAAGCAGATGGCAGAACTAGAGAAGATGAGAATGGATTTCCACAGGGACTTGGAACTGCAGAAGAGGCAGATTATGGAGAGAGCGCAGGCTGAGATAGCGAAAATACAGCATGGCGATGATGAGGAGAATGATAACTCTGCCGAAAATGCGAGCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

398

Amino Acids

45.09

Weight (kDa)

4.71

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	162 - 249	7.8e-20	Myb/SANT-like DNA-binding domain
MADF_DNA_bdg	PF10545	184 - 247	2.9e-06	Alcohol dehydrogenase transcription factor Myb/SANT-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24490
fragaria_vesca	FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_1g05150 FvH4_6g31095 FvH4_6g31095
malus_domestica	MD09G1212700.v1.1 MD15G1188000.v1.1 MD17G1195600.v1.1
prunus_persica	Prupe.3G071500_v2.0.a1 Prupe.3G071500_v2.0.a1 Prupe.7G228600_v2.0.a1
pyrus_communis	pycom09g13040 pycom15g16850 pycom17g20120
rosa_chinensis	RchiOBHm_Chr2g0090791 RchiOBHm_Chr2g0137821
rosa_laevigata	RLG00000016143 RLG00000019678
rosa_multiflora	Rmu_sc0002170.1_g000002 Rmu_ssc0000367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106790 Rroxscaffold_2G00150820
rosa_rugosa	Rorug02G0010500 Rorug02G0346200 Rorug02G0346300
rosa_samantha	Rh2AG056500 Rh2AG393000 Rh2BG055200 Rh2BG400700 Rh2CG057600 Rh2CG379700 Rh2DG056200 Rh2DG415600
rosa_wichuraiana	Rw2G004600 Rw2G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	704
AccBSI	CCGCTC	1 cut(s)	1188
AciI	CCGC	2 cut(s)	637, 1188
AcoI	YGGCCR	1 cut(s)	466
AcsI	RAATTY	2 cut(s)	395, 874
AdeI	CACNNNGTG	1 cut(s)	633
AfaI	GTAC	3 cut(s)	44, 668, 938
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgeI	ACCGGT	1 cut(s)	531
AgsI	TTSAA	8 cut(s)	346, 373, 387, 542, 617, 832, 992, 1022
AjnI	CCWGG	1 cut(s)	868
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	3 cut(s)	91, 770, 887
AluI	AGCT	3 cut(s)	91, 770, 887
Alw26I	GTCTC	3 cut(s)	158, 494, 689
AlwNI	CAGNNNCTG	1 cut(s)	698
AoxI	GGCC	4 cut(s)	122, 466, 681, 772
ApeKI	GCWGC	3 cut(s)	428, 431, 434
ApoI	RAATTY	2 cut(s)	395, 874
AsiGI	ACCGGT	1 cut(s)	531
AspA2I	CCTAGG	1 cut(s)	119
AspLEI	GCGC	2 cut(s)	478, 1120
AspS9I	GGNCC	2 cut(s)	110, 681
AsuHPI	GGTGA	3 cut(s)	47, 200, 539
AvaII	GGWCC	1 cut(s)	110
AvrII	CCTAGG	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	704
BarI	GAAGNNNNNNTAC	2 cut(s)	920, 952
BauI	CACGAG	2 cut(s)	99, 709
BbsI	GAAGAC	1 cut(s)	551
BbvCI	CCTCAGC	1 cut(s)	888
BbvI	GCAGC	3 cut(s)	415, 418, 421
BccI	CCATC	4 cut(s)	310, 730, 905, 1036
BciT130I	CCWGG	1 cut(s)	870
BciVI	GTATCC	2 cut(s)	39, 643
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	3 cut(s)	158, 494, 689
BfaI	CTAG	3 cut(s)	120, 515, 1052
BfmI	CTRYAG	1 cut(s)	1091
BfuI	GTATCC	2 cut(s)	39, 643
BisI	GCNGC	4 cut(s)	429, 432, 435, 637
BlnI	CCTAGG	1 cut(s)	119
BlsI	GCNGC	4 cut(s)	430, 433, 436, 638
Bme1390I	CCNGG	1 cut(s)	870
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	110, 681
BmiI	GGNNCC	3 cut(s)	417, 706, 964
BmrFI	CCNGG	1 cut(s)	870
BmsI	GCATC	2 cut(s)	10, 508
BpiI	GAAGAC	1 cut(s)	551
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
Bpu10I	CCTNAGC	1 cut(s)	888
BsaBI	GATNNNNATC	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	119, 869
BsaWI	WCCGGW	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse118I	RCCGGY	2 cut(s)	412, 531
Bse1I	ACTGG	2 cut(s)	125, 703
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	870
BseDI	CCNNGG	2 cut(s)	119, 869
BseGI	GGATG	7 cut(s)	10, 256, 271, 298, 337, 856, 904
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	4 cut(s)	558, 807, 879, 1116
BseNI	ACTGG	2 cut(s)	125, 703
BseRI	GAGGAG	5 cut(s)	393, 408, 411, 584, 1172
BseXI	GCAGC	3 cut(s)	415, 418, 421
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	4 cut(s)	124, 468, 683, 774
BshNI	GGYRCC	1 cut(s)	704
BshTI	ACCGGT	1 cut(s)	531
BsiSI	CCGG	3 cut(s)	413, 469, 532
BslFI	GGGAC	2 cut(s)	69, 1094
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	3 cut(s)	158, 494, 689
BsmFI	GGGAC	2 cut(s)	69, 1094
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	4 cut(s)	124, 468, 683, 774
Bsp143I	GATC	2 cut(s)	256, 955
BspACI	CCGC	2 cut(s)	637, 1188
BspANI	GGCC	4 cut(s)	124, 468, 683, 774
BspCNI	CTCAG	4 cut(s)	559, 806, 880, 1117
BspHI	TCATGA	1 cut(s)	810
BspLI	GGNNCC	3 cut(s)	417, 706, 964
BspMAI	CTGCAG	1 cut(s)	1095
BspT107I	GGYRCC	1 cut(s)	704
BsrBI	CCGCTC	1 cut(s)	1188
BsrFI	RCCGGY	2 cut(s)	412, 531
BsrI	ACTGG	2 cut(s)	125, 703
BssAI	RCCGGY	2 cut(s)	412, 531
BssECI	CCNNGG	2 cut(s)	119, 869
BssMI	GATC	2 cut(s)	256, 955
BssSI	CACGAG	2 cut(s)	99, 709
BssT1I	CCWWGG	1 cut(s)	119
Bst2BI	CACGAG	2 cut(s)	99, 709
Bst2UI	CCWGG	1 cut(s)	870
Bst4CI	ACNGT	2 cut(s)	47, 633
Bst6I	CTCTTC	5 cut(s)	174, 294, 368, 923, 1091
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstC8I	GCNNGC	6 cut(s)	414, 768, 772, 978, 1122, 1186
BstDEI	CTNAG	5 cut(s)	357, 567, 793, 888, 1125
BstEII	GGTNACC	1 cut(s)	527
BstF5I	GGATG	7 cut(s)	10, 256, 271, 298, 337, 856, 904
BstHHI	GCGC	2 cut(s)	478, 1120
BstKTI	GATC	2 cut(s)	259, 958
BstMAI	GTCTC	3 cut(s)	158, 494, 689
BstMBI	GATC	2 cut(s)	256, 955
BstMWI	GCNNNNNNNGC	7 cut(s)	434, 443, 689, 763, 1099, 1130, 1181
BstNI	CCWGG	1 cut(s)	870
BstPI	GGTNACC	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	868
BstSFI	CTRYAG	1 cut(s)	1091
BstV1I	GCAGC	3 cut(s)	415, 418, 421
BstV2I	GAAGAC	1 cut(s)	551
BsuI	GTATCC	2 cut(s)	39, 643
BsuRI	GGCC	4 cut(s)	124, 468, 683, 774
BtgZI	GCGATG	2 cut(s)	738, 1164
BtsCI	GGATG	7 cut(s)	10, 256, 271, 298, 337, 856, 904
BtsIMutI	CAGTG	2 cut(s)	638, 1006
Cac8I	GCNNGC	6 cut(s)	414, 768, 772, 978, 1122, 1186
CaiI	CAGNNNCTG	1 cut(s)	698
CciI	TCATGA	1 cut(s)	810
CfoI	GCGC	2 cut(s)	478, 1120
Cfr10I	RCCGGY	2 cut(s)	412, 531
Cfr13I	GGNCC	2 cut(s)	110, 681
Csp6I	GTAC	3 cut(s)	43, 667, 937
CspAI	ACCGGT	1 cut(s)	531
CviAII	CATG	3 cut(s)	497, 811, 1145
CviQI	GTAC	3 cut(s)	43, 667, 937
DdeI	CTNAG	5 cut(s)	357, 567, 793, 888, 1125
DpnI	GATC	2 cut(s)	258, 957
DpnII	GATC	2 cut(s)	256, 955
DraIII	CACNNNGTG	1 cut(s)	633
EaeI	YGGCCR	1 cut(s)	466
Eam1104I	CTCTTC	5 cut(s)	174, 294, 368, 923, 1091
EarI	CTCTTC	5 cut(s)	174, 294, 368, 923, 1091
Eco130I	CCWWGG	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	110
Eco91I	GGTNACC	1 cut(s)	527
EcoO65I	GGTNACC	1 cut(s)	527
EcoRI	GAATTC	1 cut(s)	874
EcoRII	CCWGG	1 cut(s)	868
EcoT14I	CCWWGG	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	3 cut(s)	500, 814, 1148
FaqI	GGGAC	2 cut(s)	69, 1094
FatI	CATG	3 cut(s)	496, 810, 1144
FauI	CCCGC	1 cut(s)	1181
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	4 cut(s)	429, 432, 435, 637
FokI	GGATG	7 cut(s)	17, 263, 278, 305, 344, 863, 911
Fsp4HI	GCNGC	4 cut(s)	429, 432, 435, 637
FspBI	CTAG	3 cut(s)	120, 515, 1052
GlaI	GCGC	2 cut(s)	477, 1119
GluI	GCNGC	4 cut(s)	429, 432, 435, 637
HaeIII	GGCC	4 cut(s)	124, 468, 683, 774
HapII	CCGG	3 cut(s)	413, 469, 532
HhaI	GCGC	2 cut(s)	478, 1120
Hin1II	CATG	3 cut(s)	500, 814, 1148
Hin6I	GCGC	2 cut(s)	476, 1118
HinP1I	GCGC	2 cut(s)	476, 1118
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	6 cut(s)	52, 556, 791, 881, 905, 983
HpaII	CCGG	3 cut(s)	413, 469, 532
HphI	GGTGA	3 cut(s)	47, 200, 539
Hpy166II	GTNNAC	2 cut(s)	235, 724
Hpy188I	TCNGA	4 cut(s)	568, 601, 880, 910
Hpy188III	TCNNGA	1 cut(s)	811
Hpy8I	GTNNAC	2 cut(s)	235, 724
HpyAV	CCTTC	4 cut(s)	237, 318, 927, 936
HpyCH4III	ACNGT	2 cut(s)	47, 633
HpyCH4IV	ACGT	2 cut(s)	82, 544
HpyCH4V	TGCA	3 cut(s)	437, 587, 1093
HpyF10VI	GCNNNNNNNGC	7 cut(s)	434, 443, 689, 763, 1099, 1130, 1181
HpyF3I	CTNAG	5 cut(s)	357, 567, 793, 888, 1125
HpySE526I	ACGT	2 cut(s)	82, 544
Hsp92II	CATG	3 cut(s)	500, 814, 1148
HspAI	GCGC	2 cut(s)	476, 1118
KroI	GCCGGC	1 cut(s)	412
KroNI	GCCGGC	1 cut(s)	414
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	256, 955
LmnI	GCTCC	3 cut(s)	406, 421, 451
Lsp1109I	GCAGC	3 cut(s)	415, 418, 421
LweI	GCATC	2 cut(s)	10, 508
MaeI	CTAG	3 cut(s)	120, 515, 1052
MaeII	ACGT	2 cut(s)	82, 544
MaeIII	GTNAC	3 cut(s)	510, 527, 1001
MalI	GATC	2 cut(s)	258, 957
MbiI	CCGCTC	1 cut(s)	1188
MboI	GATC	2 cut(s)	256, 955
MfeI	CAATTG	1 cut(s)	459
MluCI	AATT	4 cut(s)	395, 459, 612, 874
MlyI	GAGTC	2 cut(s)	565, 785
MmeI	TCCRAC	2 cut(s)	627, 828
MroNI	GCCGGC	1 cut(s)	412
MseI	TTAA	1 cut(s)	656
MslI	CAYNNNNRTG	3 cut(s)	240, 264, 1149
MspA1I	CMGCKG	1 cut(s)	887
MspI	CCGG	3 cut(s)	413, 469, 532
MspR9I	CCNGG	1 cut(s)	870
MunI	CAATTG	1 cut(s)	459
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	1 cut(s)	870
MwoI	GCNNNNNNNGC	7 cut(s)	434, 443, 689, 763, 1099, 1130, 1181
NaeI	GCCGGC	1 cut(s)	414
NdeII	GATC	2 cut(s)	256, 955
NgoMIV	GCCGGC	1 cut(s)	412
NlaIII	CATG	3 cut(s)	500, 814, 1148
NlaIV	GGNNCC	3 cut(s)	417, 706, 964
NmuCI	GTSAC	2 cut(s)	527, 1001
OliI	CACNNNNGTG	1 cut(s)	240
PagI	TCATGA	1 cut(s)	810
PctI	GAATGC	1 cut(s)	478
PdiI	GCCGGC	1 cut(s)	414
PfeI	GAWTC	4 cut(s)	52, 881, 905, 983
PinAI	ACCGGT	1 cut(s)	531
PkrI	GCNGC	4 cut(s)	430, 433, 436, 638
PleI	GAGTC	2 cut(s)	564, 785
PpsI	GAGTC	2 cut(s)	564, 785
Psp6I	CCWGG	1 cut(s)	868
PspEI	GGTNACC	1 cut(s)	527
PspGI	CCWGG	1 cut(s)	868
PspN4I	GGNNCC	3 cut(s)	417, 706, 964
PspPI	GGNCC	2 cut(s)	110, 681
PstI	CTGCAG	1 cut(s)	1095
PstNI	CAGNNNCTG	1 cut(s)	698
PvuII	CAGCTG	1 cut(s)	887
RsaI	GTAC	3 cut(s)	44, 668, 938
RsaNI	GTAC	3 cut(s)	43, 667, 937
RseI	CAYNNNNRTG	3 cut(s)	240, 264, 1149
SaqAI	TTAA	1 cut(s)	656
SatI	GCNGC	4 cut(s)	429, 432, 435, 637
Sau3AI	GATC	2 cut(s)	256, 955
Sau96I	GGNCC	2 cut(s)	110, 681
SchI	GAGTC	2 cut(s)	565, 785
ScrFI	CCNGG	1 cut(s)	870
SfaNI	GCATC	2 cut(s)	10, 508
SfcI	CTRYAG	1 cut(s)	1091
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	3 cut(s)	240, 264, 1149
Sse9I	AATT	4 cut(s)	395, 459, 612, 874
SsiI	CCGC	2 cut(s)	637, 1188
SspMI	CTAG	3 cut(s)	120, 515, 1052
StyD4I	CCNGG	1 cut(s)	868
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	2 cut(s)	47, 633
TaiI	ACGT	2 cut(s)	85, 547
TaqI	TCGA	1 cut(s)	214
TasI	AATT	4 cut(s)	395, 459, 612, 874
TatI	WGTACW	1 cut(s)	666
TauI	GCSGC	1 cut(s)	639
TfiI	GAWTC	4 cut(s)	52, 881, 905, 983
Tru1I	TTAA	1 cut(s)	656
Tru9I	TTAA	1 cut(s)	656
TscAI	CASTG	2 cut(s)	638, 1006
TseFI	GTSAC	2 cut(s)	527, 1001
TseI	GCWGC	3 cut(s)	428, 431, 434
Tsp45I	GTSAC	2 cut(s)	527, 1001
TspDTI	ATGAA	6 cut(s)	192, 294, 312, 408, 799, 827
TspGWI	ACGGA	2 cut(s)	119, 954
TspRI	CASTG	2 cut(s)	638, 1006
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	2 cut(s)	395, 874
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XmaJI	CCTAGG	1 cut(s)	119
XspI	CTAG	3 cut(s)	120, 515, 1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.