RchiOBHm_Chr2g0090791
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003047
Physical Location & Seq
Reverse (-)
4504348 .. 4507064
2717 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46603

Sequence Viewer

Length: 1140 bp
ATGGACGACATGGAAGACGATGAAAGGTACCACCCGAAACCCTACAACCATCACAGCTCCTCGAATCGGCGAAAGATCCACACCCGGAACAACCCGTATTCCCGGCCACCTCCCAATCGATACGAGCCGGAAGACGACGACGACGCAATCGACGACGATCTGGACGAGGAGAATTACGGCCAAGACGACGTCGTCGTGGAAGAGCAGTACCAGCACCACCCGCACGACCTGAATCGGAGCTTCGACGCCCCCGCTGAGAACGGCTTCGAGTGGCACCCGAAGAAGAGGAAGCTGAAGAATTTGGATTCGGGTTACGAGTTCGCGCCTCGGGTCAAGTTTCCGGGTCGGGTCGGGTCGAGCTCGGAGGAGTGGACGGAGCACGCGGTGTTTGTGCTGCTGGAGGTTTGGGGTGACAGGTTTCTTGAGCTGGGGAGGAAGAGCTTGAGGTCGGAAGACTGGAGTGACGTGGCGGTGAAGGTATCGGAGGGGAGCAAGTTGGAGAGGAGTGATAAGCAATGTAGGAAAATGCTGGATATGCTGAAGAGGAAGTATAAGAAGGAGAAGGCGAAAGTCGAAGAAACAGGGGGTTCGAGCAAGTGGGGGTATTTCAAGAAGATGGAAATGCTGATGGCCTCGAATATGAGGCAGGAATGTGGGTTGGCTTGTGGGGTGGATAATGGGGAGTATGTGTTTATGAATACGAGGGTGTATTTGGAGAAGTCGAATGGGTTTGATGAGATGAGGGATAGTCCAGGGGAGTCAGAGACGGATGAGGAGGAGAATGAGAGTGAGCAGAATGGGTTCGGGTTTGGGATTCCTCCGAGGCAGGGAGGGGGAGGGGGGTTGGAAGGGTCTTCTTTCCGAGTGTTGGCGGATTCTATTCAGAAGTTTGGGGAGATATATGAGAATATTGAGAGTAGTAGGAGGCAGCAGATGATGGAGTTGGAGAAGATGAGGAGGGATTTTAATAAGGAAATGGAGTTGCAGAAGAAGCAGATTCTTGAGAGGGCACAGGCGGAGATTGCGAAGATTCAGGAAGCGGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGACGACTCGGATGCTTCTGCTGAAGATCTGAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

379

Amino Acids

43.96

Weight (kDa)

4.5

Isoelectric Point (pI)

52.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 122 - 208 1.7e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
AatII GACGTC 1 cut(s) 192
Acc65I GGTACC 1 cut(s) 27
AccB1I GGYRCC 2 cut(s) 27, 273
AccII CGCG 2 cut(s) 323, 383
AciI CCGC 7 cut(s) 221, 252, 383, 470, 872, 1016, 1040
AclWI GGATC 1 cut(s) 70
AcoI YGGCCR 2 cut(s) 104, 178
AcsI RAATTY 1 cut(s) 298
AcuI CTGAAG 2 cut(s) 314, 560
AcyI GRCGYC 2 cut(s) 189, 246
AdeI CACNNNGTG 1 cut(s) 385
AfaI GTAC 2 cut(s) 29, 209
AfiI CCNNNNNNNGG 3 cut(s) 66, 827, 868
AgsI TTSAA 1 cut(s) 610
AjiI CACGTC 1 cut(s) 466
AjnI CCWGG 1 cut(s) 751
AluBI AGCT 6 cut(s) 57, 240, 292, 360, 427, 441
AluI AGCT 6 cut(s) 57, 240, 292, 360, 427, 441
Alw21I GWGCWC 2 cut(s) 362, 381
Alw26I GTCTC 1 cut(s) 758
AlwI GGATC 1 cut(s) 70
Ama87I CYCGRG 1 cut(s) 327
AoxI GGCC 3 cut(s) 104, 178, 630
ApeKI GCWGC 2 cut(s) 394, 928
ApoI RAATTY 1 cut(s) 298
Asp700I GAANNNNTTC 2 cut(s) 263, 800
Asp718I GGTACC 1 cut(s) 27
AspLEI GCGC 1 cut(s) 325
AsuC2I CCSGG 3 cut(s) 85, 103, 342
AsuHPI GGTGA 2 cut(s) 422, 484
AvaI CYCGRG 1 cut(s) 327
BaeGI GKGCMC 1 cut(s) 1012
BanI GGYRCC 2 cut(s) 27, 273
BanII GRGCYC 1 cut(s) 362
BbsI GAAGAC 4 cut(s) 21, 138, 459, 846
Bbv12I GWGCWC 2 cut(s) 362, 381
BbvI GCAGC 2 cut(s) 381, 940
BccI CCATC 4 cut(s) 57, 610, 622, 931
BceAI ACGGC 2 cut(s) 193, 277
BcgI CGANNNNNNTGC 2 cut(s) 1094, 1128
BciT130I CCWGG 1 cut(s) 753
BcnI CCSGG 3 cut(s) 85, 103, 342
BcoDI GTCTC 1 cut(s) 758
BglII AGATCT 1 cut(s) 1126
BisI GCNGC 2 cut(s) 395, 929
BlsI GCNGC 2 cut(s) 396, 930
Bme1390I CCNGG 4 cut(s) 85, 103, 342, 753
BmeT110I CYCGRG 1 cut(s) 327
BmgBI CACGTC 1 cut(s) 466
BmiI GGNNCC 2 cut(s) 29, 275
BmrFI CCNGG 4 cut(s) 85, 103, 342, 753
BmsI GCATC 1 cut(s) 1102
BpiI GAAGAC 4 cut(s) 21, 138, 459, 846
BpmI CTGGAG 2 cut(s) 419, 478
BpuEI CTTGAG 3 cut(s) 443, 463, 1022
BpuMI CCSGG 3 cut(s) 85, 103, 342
Bsa29I ATCGAT 1 cut(s) 118
BsaHI GRCGYC 2 cut(s) 189, 246
BsaJI CCNNGG 3 cut(s) 326, 752, 821
BsaXI ACNNNNNCTCC 2 cut(s) 674, 704
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 827, 868
Bse1I ACTGG 1 cut(s) 461
Bse3DI GCAATG 1 cut(s) 521
BseBI CCWGG 1 cut(s) 753
BseCI ATCGAT 1 cut(s) 118
BseDI CCNNGG 3 cut(s) 326, 752, 821
BseGI GGATG 3 cut(s) 775, 1048, 1117
BseLI CCNNNNNNNGG 3 cut(s) 66, 827, 868
BseMI GCAATG 1 cut(s) 521
BseMII CTCAG 2 cut(s) 246, 1121
BseNI ACTGG 1 cut(s) 461
BseRI GAGGAG 7 cut(s) 49, 182, 380, 517, 788, 791, 970
BseSI GKGCMC 1 cut(s) 1012
BseXI GCAGC 2 cut(s) 381, 940
BseYI CCCAGC 1 cut(s) 427
Bsh1236I CGCG 2 cut(s) 323, 383
BshFI GGCC 3 cut(s) 106, 180, 632
BshNI GGYRCC 2 cut(s) 27, 273
BshVI ATCGAT 1 cut(s) 118
BsiHKAI GWGCWC 2 cut(s) 362, 381
BsiHKCI CYCGRG 1 cut(s) 327
BsiSI CCGG 4 cut(s) 85, 103, 128, 341
BslI CCNNNNNNNGG 3 cut(s) 66, 827, 868
BsmAI GTCTC 1 cut(s) 758
BsmBI CGTCTC 1 cut(s) 758
BsnI GGCC 3 cut(s) 106, 180, 632
BsoBI CYCGRG 1 cut(s) 327
Bsp1286I GDGCHC 3 cut(s) 362, 381, 1012
Bsp143I GATC 3 cut(s) 75, 157, 1126
BspACI CCGC 7 cut(s) 221, 252, 383, 470, 872, 1016, 1040
BspANI GGCC 3 cut(s) 106, 180, 632
BspCNI CTCAG 2 cut(s) 247, 1122
BspDI ATCGAT 1 cut(s) 118
BspFNI CGCG 2 cut(s) 323, 383
BspLI GGNNCC 2 cut(s) 29, 275
BspPI GGATC 1 cut(s) 70
BspQI GCTCTTC 2 cut(s) 195, 431
BspT107I GGYRCC 2 cut(s) 27, 273
BsrDI GCAATG 1 cut(s) 521
BsrI ACTGG 1 cut(s) 461
BssECI CCNNGG 3 cut(s) 326, 752, 821
BssMI GATC 3 cut(s) 75, 157, 1126
BssNI GRCGYC 2 cut(s) 189, 246
Bst2UI CCWGG 1 cut(s) 753
Bst6I CTCTTC 4 cut(s) 195, 278, 431, 536
BstACI GRCGYC 2 cut(s) 189, 246
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 2 cut(s) 255, 1130
BstF5I GGATG 3 cut(s) 775, 1048, 1117
BstFNI CGCG 2 cut(s) 323, 383
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 3 cut(s) 78, 160, 1129
BstMAI GTCTC 1 cut(s) 758
BstMBI GATC 3 cut(s) 75, 157, 1126
BstMWI GCNNNNNNNGC 5 cut(s) 211, 220, 535, 991, 1022
BstNI CCWGG 1 cut(s) 753
BstSCI CCNGG 4 cut(s) 83, 101, 340, 751
BstSLI GKGCMC 1 cut(s) 1012
BstUI CGCG 2 cut(s) 323, 383
BstV1I GCAGC 2 cut(s) 381, 940
BstV2I GAAGAC 4 cut(s) 21, 138, 459, 846
BstX2I RGATCY 2 cut(s) 75, 1126
BstYI RGATCY 2 cut(s) 75, 1126
Bsu15I ATCGAT 1 cut(s) 118
BsuRI GGCC 3 cut(s) 106, 180, 632
BsuTUI ATCGAT 1 cut(s) 118
BtrI CACGTC 1 cut(s) 466
BtsCI GGATG 3 cut(s) 775, 1048, 1117
Cac8I GCNNGC 1 cut(s) 381
CfoI GCGC 1 cut(s) 325
ClaI ATCGAT 1 cut(s) 118
CseI GACGC 2 cut(s) 152, 254
Csp6I GTAC 2 cut(s) 28, 208
CviAII CATG 1 cut(s) 10
CviQI GTAC 2 cut(s) 28, 208
DdeI CTNAG 2 cut(s) 255, 1130
DpnI GATC 3 cut(s) 77, 159, 1128
DpnII GATC 3 cut(s) 75, 157, 1126
DraIII CACNNNGTG 1 cut(s) 385
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
EaeI YGGCCR 2 cut(s) 104, 178
Eam1104I CTCTTC 4 cut(s) 195, 278, 431, 536
EarI CTCTTC 4 cut(s) 195, 278, 431, 536
EciI GGCGGA 2 cut(s) 887, 1031
Ecl136II GAGCTC 1 cut(s) 360
Eco24I GRGCYC 1 cut(s) 362
Eco53kI GAGCTC 1 cut(s) 360
Eco57I CTGAAG 2 cut(s) 314, 560
Eco88I CYCGRG 1 cut(s) 327
EcoICRI GAGCTC 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 751
EcoT38I GRGCYC 1 cut(s) 362
Esp3I CGTCTC 1 cut(s) 758
FaeI CATG 1 cut(s) 13
FaiI YATR 8 cut(s) 11, 536, 552, 641, 687, 695, 901, 903
FatI CATG 1 cut(s) 9
FauI CCCGC 2 cut(s) 228, 259
Fnu4HI GCNGC 2 cut(s) 395, 929
FokI GGATG 3 cut(s) 782, 1055, 1124
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 2 cut(s) 395, 929
GlaI GCGC 1 cut(s) 324
GluI GCNGC 2 cut(s) 395, 929
GsaI CCCAGC 1 cut(s) 431
GsuI CTGGAG 2 cut(s) 419, 478
HaeIII GGCC 3 cut(s) 106, 180, 632
HapII CCGG 4 cut(s) 85, 103, 128, 341
HgaI GACGC 2 cut(s) 152, 254
HhaI GCGC 1 cut(s) 325
Hin1I GRCGYC 2 cut(s) 189, 246
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HinfI GANTC 9 cut(s) 64, 232, 305, 758, 814, 875, 997, 1030, 1106
HpaII CCGG 4 cut(s) 85, 103, 128, 341
HphI GGTGA 2 cut(s) 422, 484
Hpy166II GTNNAC 1 cut(s) 372
Hpy188III TCNNGA 5 cut(s) 161, 422, 610, 1001, 1034
Hpy8I GTNNAC 1 cut(s) 372
Hpy99I CGWCG 9 cut(s) 140, 143, 146, 155, 158, 191, 194, 197, 248
HpyAV CCTTC 4 cut(s) 469, 550, 556, 842
HpyCH4IV ACGT 2 cut(s) 189, 465
HpyCH4V TGCA 1 cut(s) 985
HpyF10VI GCNNNNNNNGC 5 cut(s) 211, 220, 535, 991, 1022
HpyF3I CTNAG 2 cut(s) 255, 1130
HpySE526I ACGT 2 cut(s) 189, 465
Hsp92I GRCGYC 2 cut(s) 189, 246
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 1 cut(s) 323
KpnI GGTACC 1 cut(s) 31
Kzo9I GATC 3 cut(s) 75, 157, 1126
LguI GCTCTTC 2 cut(s) 195, 431
LmnI GCTCC 4 cut(s) 62, 237, 376, 489
Lsp1109I GCAGC 2 cut(s) 381, 940
LweI GCATC 1 cut(s) 1102
MaeII ACGT 2 cut(s) 189, 465
MaeIII GTNAC 3 cut(s) 311, 410, 461
MalI GATC 3 cut(s) 77, 159, 1128
MboI GATC 3 cut(s) 75, 157, 1126
MflI RGATCY 2 cut(s) 75, 1126
MhlI GDGCHC 3 cut(s) 362, 381, 1012
MluCI AATT 2 cut(s) 172, 298
MlyI GAGTC 2 cut(s) 767, 1100
MmeI TCCRAC 4 cut(s) 429, 477, 825, 924
MroXI GAANNNNTTC 2 cut(s) 263, 800
MseI TTAA 1 cut(s) 966
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 4 cut(s) 85, 103, 128, 341
MspR9I CCNGG 4 cut(s) 85, 103, 342, 753
MvaI CCWGG 1 cut(s) 753
MvnI CGCG 2 cut(s) 323, 383
MwoI GCNNNNNNNGC 5 cut(s) 211, 220, 535, 991, 1022
NciI CCSGG 3 cut(s) 85, 103, 342
NdeII GATC 3 cut(s) 75, 157, 1126
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 2 cut(s) 29, 275
NmuCI GTSAC 2 cut(s) 410, 461
PciSI GCTCTTC 2 cut(s) 195, 431
PcsI WCGNNNNNNNCGW 5 cut(s) 147, 150, 162, 183, 192
PdmI GAANNNNTTC 2 cut(s) 263, 800
PfeI GAWTC 7 cut(s) 64, 232, 305, 814, 875, 997, 1030
PflFI GACNNNGTC 2 cut(s) 188, 191
PkrI GCNGC 2 cut(s) 396, 930
PleI GAGTC 2 cut(s) 766, 1100
PpsI GAGTC 2 cut(s) 766, 1100
Psp124BI GAGCTC 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 751
PspFI CCCAGC 1 cut(s) 427
PspGI CCWGG 1 cut(s) 751
PspN4I GGNNCC 2 cut(s) 29, 275
PsuI RGATCY 2 cut(s) 75, 1126
PsyI GACNNNGTC 2 cut(s) 188, 191
RsaI GTAC 2 cut(s) 29, 209
RsaNI GTAC 2 cut(s) 28, 208
SacI GAGCTC 1 cut(s) 362
SapI GCTCTTC 2 cut(s) 195, 431
SaqAI TTAA 1 cut(s) 966
SatI GCNGC 2 cut(s) 395, 929
Sau3AI GATC 3 cut(s) 75, 157, 1126
SchI GAGTC 2 cut(s) 767, 1100
ScrFI CCNGG 4 cut(s) 85, 103, 342, 753
SduI GDGCHC 3 cut(s) 362, 381, 1012
SfaNI GCATC 1 cut(s) 1102
SmlI CTYRAG 3 cut(s) 422, 442, 1001
SmoI CTYRAG 3 cut(s) 422, 442, 1001
Sse9I AATT 2 cut(s) 172, 298
SsiI CCGC 7 cut(s) 221, 252, 383, 470, 872, 1016, 1040
SspI AATATT 1 cut(s) 910
SstI GAGCTC 1 cut(s) 362
StyD4I CCNGG 4 cut(s) 83, 101, 340, 751
TaiI ACGT 2 cut(s) 192, 468
TasI AATT 2 cut(s) 172, 298
TfiI GAWTC 7 cut(s) 64, 232, 305, 814, 875, 997, 1030
Tru1I TTAA 1 cut(s) 966
Tru9I TTAA 1 cut(s) 966
TseFI GTSAC 2 cut(s) 410, 461
TseI GCWGC 2 cut(s) 394, 928
Tsp45I GTSAC 2 cut(s) 410, 461
TspDTI ATGAA 2 cut(s) 36, 710
TspGWI ACGGA 2 cut(s) 389, 782
Tth111I GACNNNGTC 2 cut(s) 188, 191
XapI RAATTY 1 cut(s) 298
XmnI GAANNNNTTC 2 cut(s) 263, 800
ZraI GACGTC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.