RLG00000016143
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003047
Physical Location & Seq
Reverse (-)
4191434 .. 4193467
2034 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016143

Sequence Viewer

Length: 1080 bp
ATGGACGACATGGAAGACGATGAAAGGTACCACCCGAAACCCTACAACCATCACAGCTCCTCGAATCGGCGAAAGATCCACACCCGGAACAACCCGTATTCCCGGCCACCTCCCAATCGATACGAGCCGGAAGACGACGACGACGACGCAATCGACGACGATCTGGACGAGGAGAATTACGGCCAAGACGACGTCGTCGTGGAAGAGCAGTACCAGCACCACCCGCACGACCTGAATCGGAGCTTCGACGCCCCCGCCGAGAACGGGTTCGAGTGGCACCCGAAGAAGAGGAAGCTGAAGAATTTGGATTCGGGTTACGAGTTCGCGCCTCGGGTCAAGTTTCCGGGTCGGGGCGGGTCGAGCTCGGAGGAGTGGACGGAGCACGCGGTGTTTGTGCTGCTGGAGGTTTGGGGGGACCGGTTTCTTGAGCTGGGGAGGAAGAGCTTGAGGTCGGAAGACTGGAGTGACGTGGCGGTGAAGGTATCGGAGGGGAGCAAATTGGAGAGGAATGATAAGCAATGTAGGAAAATGCTGGATATGCTGAAGAGGAAGTATAAGAAGGAGAAGGCGAAAATCGAAGAAACAGGGGGTTCGAGCAAGTGGGGGTATTTCAAGAAGATGGAAATGCTGATGGCCTTGAATATGAGGCAGGAATGTGGGTTGGCTTGTGGGGTGGATAATGGGGAGTATGTGTTTATGAATACGAGGGTGTATTTGGAGAAGTCAAATGGGTTTGATGAGATGAGGGATAGTCCAGGGGAGTCGGAGACGGATGAGGATGAGAATGAGAGTGAGCAGAATGGGTTCGGGATTGGGATTGGGATTCCTCCGAGGCAGGGAGGGGGAGGGGGGTTGGAAGGGTCTTCGTTCCGAGTGTTGGCGGATTCTATTCAGAAGTTTGGGGAGATATATGAGAATATTGAGAGTAGCGGGATTTGTAAAGACTGGCATCTGAGTGGAACCATCCATGGAAAATTTTCAACTGTTTCAGAGTGGAACCAGCTGCTCTGTGTTGAAGAAAGGATTTGTGGGCATACATTGCGAATTCTTCTCGCCTCTTGTCTCAGGACTGGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

360

Amino Acids

41.21

Weight (kDa)

5.07

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 123 - 209 5.1e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 194
AatII GACGTC 1 cut(s) 195
Acc65I GGTACC 1 cut(s) 27
AccB1I GGYRCC 2 cut(s) 27, 276
AccII CGCG 2 cut(s) 326, 386
AciI CCGC 7 cut(s) 224, 255, 354, 386, 473, 881, 930
AclWI GGATC 1 cut(s) 70
AcoI YGGCCR 2 cut(s) 104, 181
AcsI RAATTY 3 cut(s) 301, 974, 1044
AcuI CTGAAG 2 cut(s) 317, 563
AcyI GRCGYC 2 cut(s) 192, 249
AdeI CACNNNGTG 1 cut(s) 388
AfaI GTAC 2 cut(s) 29, 212
AfiI CCNNNNNNNGG 5 cut(s) 66, 264, 350, 836, 877
AgeI ACCGGT 1 cut(s) 417
AgsI TTSAA 4 cut(s) 613, 640, 981, 1016
AjiI CACGTC 1 cut(s) 469
AjnI CCWGG 1 cut(s) 754
AluBI AGCT 7 cut(s) 57, 243, 295, 363, 430, 444, 1003
AluI AGCT 7 cut(s) 57, 243, 295, 363, 430, 444, 1003
Alw21I GWGCWC 2 cut(s) 365, 384
Alw26I GTCTC 2 cut(s) 761, 1067
AlwI GGATC 1 cut(s) 70
Ama87I CYCGRG 1 cut(s) 330
AoxI GGCC 3 cut(s) 104, 181, 633
ApeKI GCWGC 2 cut(s) 397, 1003
ApoI RAATTY 3 cut(s) 301, 974, 1044
AsiGI ACCGGT 1 cut(s) 417
Asp700I GAANNNNTTC 3 cut(s) 266, 803, 976
Asp718I GGTACC 1 cut(s) 27
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 415
AsuC2I CCSGG 3 cut(s) 85, 103, 345
AsuHPI GGTGA 1 cut(s) 487
AvaI CYCGRG 1 cut(s) 330
AvaII GGWCC 1 cut(s) 415
BanI GGYRCC 2 cut(s) 27, 276
BanII GRGCYC 1 cut(s) 365
BbsI GAAGAC 4 cut(s) 21, 138, 462, 855
Bbv12I GWGCWC 2 cut(s) 365, 384
BbvI GCAGC 2 cut(s) 384, 990
BccI CCATC 4 cut(s) 57, 613, 625, 971
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 756
BcnI CCSGG 3 cut(s) 85, 103, 345
BcoDI GTCTC 2 cut(s) 761, 1067
BisI GCNGC 2 cut(s) 398, 1004
BlsI GCNGC 2 cut(s) 399, 1005
Bme1390I CCNGG 4 cut(s) 85, 103, 345, 756
Bme18I GGWCC 1 cut(s) 415
BmeT110I CYCGRG 1 cut(s) 330
BmgBI CACGTC 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 415
BmiI GGNNCC 5 cut(s) 29, 278, 416, 961, 998
BmrFI CCNGG 4 cut(s) 85, 103, 345, 756
BmsI GCATC 1 cut(s) 958
BpiI GAAGAC 4 cut(s) 21, 138, 462, 855
BpmI CTGGAG 2 cut(s) 422, 481
BpuEI CTTGAG 2 cut(s) 446, 466
BpuMI CCSGG 3 cut(s) 85, 103, 345
Bsa29I ATCGAT 1 cut(s) 118
BsaHI GRCGYC 2 cut(s) 192, 249
BsaJI CCNNGG 4 cut(s) 329, 755, 830, 967
BsaWI WCCGGW 1 cut(s) 417
BsaXI ACNNNNNCTCC 2 cut(s) 677, 707
Bsc4I CCNNNNNNNGG 5 cut(s) 66, 264, 350, 836, 877
Bse118I RCCGGY 1 cut(s) 417
Bse1I ACTGG 3 cut(s) 464, 950, 1075
Bse3DI GCAATG 2 cut(s) 524, 1037
BseBI CCWGG 1 cut(s) 756
BseCI ATCGAT 1 cut(s) 118
BseDI CCNNGG 4 cut(s) 329, 755, 830, 967
BseGI GGATG 3 cut(s) 778, 784, 963
BseLI CCNNNNNNNGG 5 cut(s) 66, 264, 350, 836, 877
BseMI GCAATG 2 cut(s) 524, 1037
BseMII CTCAG 2 cut(s) 944, 1078
BseNI ACTGG 3 cut(s) 464, 950, 1075
BseRI GAGGAG 3 cut(s) 49, 185, 383
BseXI GCAGC 2 cut(s) 384, 990
BseYI CCCAGC 1 cut(s) 430
Bsh1236I CGCG 2 cut(s) 326, 386
BshFI GGCC 3 cut(s) 106, 183, 635
BshNI GGYRCC 2 cut(s) 27, 276
BshTI ACCGGT 1 cut(s) 417
BshVI ATCGAT 1 cut(s) 118
BsiHKAI GWGCWC 2 cut(s) 365, 384
BsiHKCI CYCGRG 1 cut(s) 330
BsiSI CCGG 5 cut(s) 85, 103, 128, 344, 418
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 5 cut(s) 66, 264, 350, 836, 877
BsmAI GTCTC 2 cut(s) 761, 1067
BsmBI CGTCTC 1 cut(s) 761
BsmFI GGGAC 1 cut(s) 428
BsnI GGCC 3 cut(s) 106, 183, 635
BsoBI CYCGRG 1 cut(s) 330
Bsp1286I GDGCHC 2 cut(s) 365, 384
Bsp143I GATC 2 cut(s) 75, 160
Bsp19I CCATGG 1 cut(s) 967
BspACI CCGC 7 cut(s) 224, 255, 354, 386, 473, 881, 930
BspANI GGCC 3 cut(s) 106, 183, 635
BspCNI CTCAG 2 cut(s) 945, 1077
BspDI ATCGAT 1 cut(s) 118
BspFNI CGCG 2 cut(s) 326, 386
BspLI GGNNCC 5 cut(s) 29, 278, 416, 961, 998
BspPI GGATC 1 cut(s) 70
BspQI GCTCTTC 2 cut(s) 198, 434
BspT107I GGYRCC 2 cut(s) 27, 276
BsrDI GCAATG 2 cut(s) 524, 1037
BsrFI RCCGGY 1 cut(s) 417
BsrI ACTGG 3 cut(s) 464, 950, 1075
BssAI RCCGGY 1 cut(s) 417
BssECI CCNNGG 4 cut(s) 329, 755, 830, 967
BssMI GATC 2 cut(s) 75, 160
BssNI GRCGYC 2 cut(s) 192, 249
BssT1I CCWWGG 1 cut(s) 967
Bst2UI CCWGG 1 cut(s) 756
Bst4CI ACNGT 1 cut(s) 985
Bst6I CTCTTC 4 cut(s) 198, 281, 434, 539
BstACI GRCGYC 2 cut(s) 192, 249
BstAPI GCANNNNNTGC 1 cut(s) 1039
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 2 cut(s) 953, 1064
BstDSI CCRYGG 1 cut(s) 967
BstF5I GGATG 3 cut(s) 778, 784, 963
BstFNI CGCG 2 cut(s) 326, 386
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 2 cut(s) 78, 163
BstMAI GTCTC 2 cut(s) 761, 1067
BstMBI GATC 2 cut(s) 75, 160
BstMWI GCNNNNNNNGC 5 cut(s) 214, 223, 360, 538, 1039
BstNI CCWGG 1 cut(s) 756
BstSCI CCNGG 4 cut(s) 83, 101, 343, 754
BstUI CGCG 2 cut(s) 326, 386
BstV1I GCAGC 2 cut(s) 384, 990
BstV2I GAAGAC 4 cut(s) 21, 138, 462, 855
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
Bsu15I ATCGAT 1 cut(s) 118
BsuRI GGCC 3 cut(s) 106, 183, 635
BsuTUI ATCGAT 1 cut(s) 118
BtgI CCRYGG 1 cut(s) 967
BtrI CACGTC 1 cut(s) 469
BtsCI GGATG 3 cut(s) 778, 784, 963
Cac8I GCNNGC 1 cut(s) 384
CfoI GCGC 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 417
Cfr13I GGNCC 1 cut(s) 415
ClaI ATCGAT 1 cut(s) 118
CseI GACGC 2 cut(s) 155, 257
Csp6I GTAC 2 cut(s) 28, 211
CspAI ACCGGT 1 cut(s) 417
CviAII CATG 2 cut(s) 10, 968
CviQI GTAC 2 cut(s) 28, 211
DdeI CTNAG 2 cut(s) 953, 1064
DpnI GATC 2 cut(s) 77, 162
DpnII GATC 2 cut(s) 75, 160
DraIII CACNNNGTG 1 cut(s) 388
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
EaeI YGGCCR 2 cut(s) 104, 181
Eam1104I CTCTTC 4 cut(s) 198, 281, 434, 539
EarI CTCTTC 4 cut(s) 198, 281, 434, 539
EciI GGCGGA 1 cut(s) 896
Ecl136II GAGCTC 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 967
Eco24I GRGCYC 1 cut(s) 365
Eco47I GGWCC 1 cut(s) 415
Eco53kI GAGCTC 1 cut(s) 363
Eco57I CTGAAG 2 cut(s) 317, 563
Eco88I CYCGRG 1 cut(s) 330
EcoICRI GAGCTC 1 cut(s) 363
EcoRI GAATTC 1 cut(s) 1044
EcoRII CCWGG 1 cut(s) 754
EcoT14I CCWWGG 1 cut(s) 967
EcoT38I GRGCYC 1 cut(s) 365
ErhI CCWWGG 1 cut(s) 967
Esp3I CGTCTC 1 cut(s) 761
FaeI CATG 2 cut(s) 13, 971
FaqI GGGAC 1 cut(s) 428
FatI CATG 2 cut(s) 9, 967
FauI CCCGC 4 cut(s) 231, 262, 347, 923
Fnu4HI GCNGC 2 cut(s) 398, 1004
FokI GGATG 3 cut(s) 785, 791, 950
FriOI GRGCYC 1 cut(s) 365
Fsp4HI GCNGC 2 cut(s) 398, 1004
GlaI GCGC 1 cut(s) 327
GluI GCNGC 2 cut(s) 398, 1004
GsaI CCCAGC 1 cut(s) 434
GsuI CTGGAG 2 cut(s) 422, 481
HaeIII GGCC 3 cut(s) 106, 183, 635
HapII CCGG 5 cut(s) 85, 103, 128, 344, 418
HgaI GACGC 2 cut(s) 155, 257
HhaI GCGC 1 cut(s) 328
Hin1I GRCGYC 2 cut(s) 192, 249
Hin1II CATG 2 cut(s) 13, 971
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HinfI GANTC 6 cut(s) 64, 235, 308, 761, 823, 884
HpaII CCGG 5 cut(s) 85, 103, 128, 344, 418
HphI GGTGA 1 cut(s) 487
Hpy166II GTNNAC 1 cut(s) 375
Hpy188III TCNNGA 5 cut(s) 164, 425, 613, 808, 1066
Hpy8I GTNNAC 1 cut(s) 375
HpyAV CCTTC 4 cut(s) 472, 553, 559, 851
HpyCH4III ACNGT 1 cut(s) 985
HpyCH4IV ACGT 2 cut(s) 192, 468
HpyF10VI GCNNNNNNNGC 5 cut(s) 214, 223, 360, 538, 1039
HpyF3I CTNAG 2 cut(s) 953, 1064
HpySE526I ACGT 2 cut(s) 192, 468
Hsp92I GRCGYC 2 cut(s) 192, 249
Hsp92II CATG 2 cut(s) 13, 971
HspAI GCGC 1 cut(s) 326
KpnI GGTACC 1 cut(s) 31
Kzo9I GATC 2 cut(s) 75, 160
LguI GCTCTTC 2 cut(s) 198, 434
LmnI GCTCC 4 cut(s) 62, 240, 379, 492
Lsp1109I GCAGC 2 cut(s) 384, 990
LweI GCATC 1 cut(s) 958
MaeII ACGT 2 cut(s) 192, 468
MaeIII GTNAC 2 cut(s) 314, 464
MalI GATC 2 cut(s) 77, 162
MboI GATC 2 cut(s) 75, 160
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 2 cut(s) 365, 384
MluCI AATT 5 cut(s) 175, 301, 497, 974, 1044
MlyI GAGTC 1 cut(s) 770
MmeI TCCRAC 3 cut(s) 432, 744, 834
MroXI GAANNNNTTC 3 cut(s) 266, 803, 976
MslI CAYNNNNRTG 1 cut(s) 954
MspA1I CMGCKG 1 cut(s) 1003
MspI CCGG 5 cut(s) 85, 103, 128, 344, 418
MspR9I CCNGG 4 cut(s) 85, 103, 345, 756
MvaI CCWGG 1 cut(s) 756
MvnI CGCG 2 cut(s) 326, 386
MwoI GCNNNNNNNGC 5 cut(s) 214, 223, 360, 538, 1039
NciI CCSGG 3 cut(s) 85, 103, 345
NcoI CCATGG 1 cut(s) 967
NdeII GATC 2 cut(s) 75, 160
NlaIII CATG 2 cut(s) 13, 971
NlaIV GGNNCC 5 cut(s) 29, 278, 416, 961, 998
NmeAIII GCCGAG 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 464
PciSI GCTCTTC 2 cut(s) 198, 434
PcsI WCGNNNNNNNCGW 7 cut(s) 141, 150, 153, 165, 186, 195, 255
PdmI GAANNNNTTC 3 cut(s) 266, 803, 976
PfeI GAWTC 5 cut(s) 64, 235, 308, 823, 884
PflFI GACNNNGTC 2 cut(s) 191, 194
PinAI ACCGGT 1 cut(s) 417
PkrI GCNGC 2 cut(s) 399, 1005
PleI GAGTC 1 cut(s) 769
PpsI GAGTC 1 cut(s) 769
Psp124BI GAGCTC 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 754
PspFI CCCAGC 1 cut(s) 430
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 5 cut(s) 29, 278, 416, 961, 998
PspPI GGNCC 1 cut(s) 415
PsuI RGATCY 1 cut(s) 75
PsyI GACNNNGTC 2 cut(s) 191, 194
PvuII CAGCTG 1 cut(s) 1003
RsaI GTAC 2 cut(s) 29, 212
RsaNI GTAC 2 cut(s) 28, 211
RseI CAYNNNNRTG 1 cut(s) 954
SacI GAGCTC 1 cut(s) 365
SapI GCTCTTC 2 cut(s) 198, 434
SatI GCNGC 2 cut(s) 398, 1004
Sau3AI GATC 2 cut(s) 75, 160
Sau96I GGNCC 1 cut(s) 415
SchI GAGTC 1 cut(s) 770
ScrFI CCNGG 4 cut(s) 85, 103, 345, 756
SduI GDGCHC 2 cut(s) 365, 384
SfaNI GCATC 1 cut(s) 958
SinI GGWCC 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 954
SmlI CTYRAG 2 cut(s) 425, 445
SmoI CTYRAG 2 cut(s) 425, 445
Sse9I AATT 5 cut(s) 175, 301, 497, 974, 1044
SsiI CCGC 7 cut(s) 224, 255, 354, 386, 473, 881, 930
SspI AATATT 1 cut(s) 919
SstI GAGCTC 1 cut(s) 365
StyD4I CCNGG 4 cut(s) 83, 101, 343, 754
StyI CCWWGG 1 cut(s) 967
TaaI ACNGT 1 cut(s) 985
TaiI ACGT 2 cut(s) 195, 471
TaqI TCGA 8 cut(s) 62, 118, 153, 246, 270, 359, 576, 593
TasI AATT 5 cut(s) 175, 301, 497, 974, 1044
TfiI GAWTC 5 cut(s) 64, 235, 308, 823, 884
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 2 cut(s) 397, 1003
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 2 cut(s) 36, 713
TspGWI ACGGA 2 cut(s) 392, 785
Tth111I GACNNNGTC 2 cut(s) 191, 194
VpaK11BI GGWCC 1 cut(s) 415
XapI RAATTY 3 cut(s) 301, 974, 1044
XmnI GAANNNNTTC 3 cut(s) 266, 803, 976
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.