Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002804

Physical Location & Seq

Genomic Coordinates Reverse (-)

10350595 .. 10352033

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAAGCAGTAACGGCGATTAAGCCACTTATCAGAGTCGCTGCTCTCTCTGGTTCTCTCCGGAAAACCTCCTTCCATACTGGTCTCCTCCGCGCTGCGATTGATTTGACGAAAGAATCGGTTCCGGGATTGCAAATTGAGTATATAGATATATCACCGTTACCGTTAATTAACACGGATCTTGAAGTCAACGGTACTTATCCTCCAGTTGTTGAAGCTTTCCGACAGAAGATTCTTGAAGCTGATAGTATCTTGTTTGCTTCTCCTGAGTATAACTTCTCTGTTTCAGCTCCACTTAAGAATGCTCTTGACTGGGCTTCAAGACCACCTAATGTTTGGGCGGACAAACCAGCTGCTATTATAAGCACCGGTGGAGGTTTTGGTGGAGGAAGATCGCAGTACCATCTTCGACAAATCGGAGTCTTCCTTGATCTTCATTTCATCAACAAACCCGAGTTTACTCTCAATGCATTTCAGCCACCTCAGAAATTTGATGCAGAAGGAAACCTTGTCGATGAAGTGACTAAGGAGAGGTTGAAACAAGTCCTTCTCTCGTTACAAGCATTCACACTTCGACTTCAAGGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010181 GO:0016020 GO:0016491 GO:0016645 GO:0016646 GO:0032553 GO:0036094 GO:0042221 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0051704 GO:0051707 GO:0052873 GO:0055114 GO:0071944 GO:0097159 GO:0097367 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FMN_red

Protein Analysis

196

Amino Acids

21.56

Weight (kDa)

6.84

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_red	PF03358	12 - 157	2.6e-40	NADPH-dependent FMN reductase
Flavodoxin_2	PF02525	14 - 127	4.4e-09	Flavodoxin-like fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27890
fragaria_vesca	FvH4_7g03210 FvH4_7g03220
malus_domestica	MD02G1284500.v1.1 MD02G1284800.v1.1 MD07G1050400.v1.1
prunus_persica	Prupe.2G038100_v2.0.a1 Prupe.2G038100_v2.0.a1 Prupe.2G038200_v2.0.a1 Prupe.2G038400_v2.0.a1 Prupe.2G038400_v2.0.a1
pyrus_communis	pycom02g24230 pycom07g03630 pycom07g03640
rosa_chinensis	RchiOBHm_Chr1g0325161 RchiOBHm_Chr1g0325181 RchiOBHm_Chr1g0325221
rosa_laevigata	RLG00000030149 RLG00000030150 RLG00000030153
rosa_multiflora	Rmu_sc0001654.1_g000012 Rmu_sc0001654.1_g000020 Rmu_sc0007742.1_g000013 Rmu_sc0007742.1_g000019 Rmu_sc0007742.1_g000022
rosa_roxburghii	Rroxscaffold_4G00324850 Rroxscaffold_4G00324860 Rroxscaffold_4G00324870
rosa_rugosa	Rorug01G0050100 Rorug01G0050200
rosa_samantha	Rh1AG066000 Rh1AG066200 Rh1BG054100 Rh1BG054200 Rh1BG054300 Rh1CG067600 Rh1DG072400
rosa_wichuraiana	Rw0G010270 Rw1G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	362
AccII	CGCG	1 cut(s)	93
AccIII	TCCGGA	1 cut(s)	60
AciI	CCGC	2 cut(s)	91, 341
AclWI	GGATC	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	488
AfaI	GTAC	2 cut(s)	196, 401
AflII	CTTAAG	1 cut(s)	296
AgeI	ACCGGT	1 cut(s)	368
AgsI	TTSAA	6 cut(s)	185, 215, 239, 321, 538, 581
AluBI	AGCT	4 cut(s)	218, 242, 290, 353
AluI	AGCT	4 cut(s)	218, 242, 290, 353
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	186
Ama87I	CYCGRG	1 cut(s)	452
Aor13HI	TCCGGA	1 cut(s)	60
ApeKI	GCWGC	3 cut(s)	41, 95, 353
ApoI	RAATTY	1 cut(s)	488
AsiGI	ACCGGT	1 cut(s)	368
Asp700I	GAANNNNTTC	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	95
AsuC2I	CCSGG	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	147
AvaI	CYCGRG	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	415
BbvI	GCAGC	3 cut(s)	28, 82, 340
BccI	CCATC	1 cut(s)	411
BceAI	ACGGC	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	89
BfrI	CTTAAG	1 cut(s)	296
BisI	GCNGC	3 cut(s)	42, 96, 354
BlsI	GCNGC	3 cut(s)	43, 97, 355
Bme1390I	CCNGG	1 cut(s)	126
BmeT110I	CYCGRG	1 cut(s)	452
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	126
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	1 cut(s)	484
BmuI	ACTGGG	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	415
BpmI	CTGGAG	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	89
BsaWI	WCCGGW	2 cut(s)	60, 368
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bse118I	RCCGGY	1 cut(s)	368
Bse1I	ACTGG	3 cut(s)	85, 206, 317
BseAI	TCCGGA	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	258, 497
BseNI	ACTGG	3 cut(s)	85, 206, 317
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	3 cut(s)	28, 82, 340
Bsh1236I	CGCG	1 cut(s)	93
BshTI	ACCGGT	1 cut(s)	368
BsiHKCI	CYCGRG	1 cut(s)	452
BsiSI	CCGG	3 cut(s)	61, 125, 369
BsmAI	GTCTC	1 cut(s)	89
BsmI	GAATGC	2 cut(s)	307, 563
Bso31I	GGTCTC	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	452
Bsp13I	TCCGGA	1 cut(s)	60
Bsp143I	GATC	3 cut(s)	178, 392, 430
BspACI	CCGC	2 cut(s)	91, 341
BspCNI	CTCAG	2 cut(s)	259, 496
BspEI	TCCGGA	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	123
BspPI	GGATC	1 cut(s)	186
BspTI	CTTAAG	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	368
BsrI	ACTGG	3 cut(s)	85, 206, 317
BssAI	RCCGGY	1 cut(s)	368
BssMI	GATC	3 cut(s)	178, 392, 430
Bst4CI	ACNGT	3 cut(s)	159, 165, 194
BstAFI	CTTAAG	1 cut(s)	296
BstDEI	CTNAG	3 cut(s)	267, 483, 525
BstFNI	CGCG	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	3 cut(s)	181, 395, 433
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	3 cut(s)	178, 392, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	124
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	3 cut(s)	28, 82, 340
BstV2I	GAAGAC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	195, 400
CspAI	ACCGGT	1 cut(s)	368
CviJI	RGCY	7 cut(s)	25, 218, 242, 290, 317, 353, 478
CviKI_1	RGCY	7 cut(s)	25, 218, 242, 290, 317, 353, 478
CviQI	GTAC	2 cut(s)	195, 400
DdeI	CTNAG	3 cut(s)	267, 483, 525
DpnI	GATC	3 cut(s)	180, 394, 432
DpnII	GATC	3 cut(s)	178, 392, 430
EciI	GGCGGA	1 cut(s)	356
Eco31I	GGTCTC	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	452
EcoT22I	ATGCAT	1 cut(s)	472
FaiI	YATR	6 cut(s)	78, 144, 146, 152, 273, 362
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
Fnu4HI	GCNGC	3 cut(s)	42, 96, 354
Fsp4HI	GCNGC	3 cut(s)	42, 96, 354
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	3 cut(s)	42, 96, 354
GsuI	CTGGAG	1 cut(s)	189
HapII	CCGG	3 cut(s)	61, 125, 369
HhaI	GCGC	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	4 cut(s)	36, 116, 232, 420
HpaII	CCGG	3 cut(s)	61, 125, 369
HphI	GGTGA	1 cut(s)	147
Hpy166II	GTNNAC	2 cut(s)	190, 459
Hpy188I	TCNGA	4 cut(s)	35, 224, 419, 486
Hpy188III	TCNNGA	6 cut(s)	61, 182, 236, 266, 308, 321
Hpy8I	GTNNAC	2 cut(s)	190, 459
HpyAV	CCTTC	3 cut(s)	82, 494, 557
HpyCH4III	ACNGT	3 cut(s)	159, 165, 194
HpyCH4V	TGCA	3 cut(s)	133, 470, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	3 cut(s)	267, 483, 525
HspAI	GCGC	1 cut(s)	93
Kpn2I	TCCGGA	1 cut(s)	60
Kzo9I	GATC	3 cut(s)	178, 392, 430
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	9 cut(s)	36, 66, 74, 138, 219, 279, 298, 363, 382
Lsp1109I	GCAGC	3 cut(s)	28, 82, 340
LweI	GCATC	1 cut(s)	484
MaeIII	GTNAC	4 cut(s)	10, 159, 520, 555
MalI	GATC	3 cut(s)	180, 394, 432
MboI	GATC	3 cut(s)	178, 392, 430
MboII	GAAGA	5 cut(s)	241, 398, 402, 415, 425
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	3 cut(s)	135, 168, 488
MlyI	GAGTC	2 cut(s)	45, 429
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	7 cut(s)	79, 98, 213, 368, 380, 492, 525
Mph1103I	ATGCAT	1 cut(s)	472
MroI	TCCGGA	1 cut(s)	60
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	4 cut(s)	21, 167, 171, 297
MspA1I	CMGCKG	1 cut(s)	353
MspCI	CTTAAG	1 cut(s)	296
MspI	CCGG	3 cut(s)	61, 125, 369
MspR9I	CCNGG	1 cut(s)	126
Mva1269I	GAATGC	2 cut(s)	307, 563
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	14
NciI	CCSGG	1 cut(s)	126
NdeII	GATC	3 cut(s)	178, 392, 430
NlaIV	GGNNCC	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	520
NsiI	ATGCAT	1 cut(s)	472
PacI	TTAATTAA	1 cut(s)	171
PctI	GAATGC	2 cut(s)	307, 563
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	116, 232
PfoI	TCCNGGA	1 cut(s)	124
PinAI	ACCGGT	1 cut(s)	368
PkrI	GCNGC	3 cut(s)	43, 97, 355
PleI	GAGTC	2 cut(s)	44, 428
PpsI	GAGTC	2 cut(s)	44, 428
PsiI	TTATAA	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	2 cut(s)	196, 401
RsaNI	GTAC	2 cut(s)	195, 400
SaqAI	TTAA	4 cut(s)	21, 167, 171, 297
SatI	GCNGC	3 cut(s)	42, 96, 354
Sau3AI	GATC	3 cut(s)	178, 392, 430
SchI	GAGTC	2 cut(s)	45, 429
ScrFI	CCNGG	1 cut(s)	126
SfaNI	GCATC	1 cut(s)	484
SgrAI	CRCCGGYG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	3 cut(s)	135, 168, 488
SsiI	CCGC	2 cut(s)	91, 341
StyD4I	CCNGG	1 cut(s)	124
TaaI	ACNGT	3 cut(s)	159, 165, 194
TaqI	TCGA	3 cut(s)	409, 513, 574
TasI	AATT	3 cut(s)	135, 168, 488
TfiI	GAWTC	2 cut(s)	116, 232
Tru1I	TTAA	4 cut(s)	21, 167, 171, 297
Tru9I	TTAA	4 cut(s)	21, 167, 171, 297
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	3 cut(s)	41, 95, 353
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	3 cut(s)	425, 430, 531
TspGWI	ACGGA	1 cut(s)	191
Vha464I	CTTAAG	1 cut(s)	296
XapI	RAATTY	1 cut(s)	488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333
XmnI	GAANNNNTTC	1 cut(s)	120
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.