Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0002804

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG066000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAGGCTTCAGTTGCAGCAAAATCGCTCATAAATATCGCAGCAGTTTCTGGTTCTCTTCGTCAAGCTTCCTACAACCGCGGCCTCATTCGCTCTGCGATTGAGATAAGCAAGGCCATCGAGGGCGTCCAAATAGAGTACATAGACATCGCACCGTTGCCGCTGCTCAACACCGATCTGGAAGGCGAGGAGAGTTTTCCACCTGCCGTCGAAGCTTTTCGTCAGAAGATTCGGGAAGCCGATAGCATCCTCTTTGCTTCTCCCGAGTACAATTACTCCATCGCCGCACCTCTGAAGAATGCAATTGATTGGGCGTCCAGACCTCCAAATGTATGGGCTGATAAGGGTGCTGCAATTATAAGTGCCGGAGGAGACTTTGGTAGTGGACGAGCCCAATACCATCTTCGCCAAGTTGGAGTTTTCCTTGACCTCCATTTCATTAACAAGCCTGAGTTTTTCTTGAATGCATTCCAGCCTCCAGCAAAATTCGACAGTGATGGCAACTTGATTGATGAACAGTCCAAGGAGAGGTTAAAAAAAGTTCTGCTATCCCTGCAGGCATTTACTTTGAGACTCAAAAAGGAAAGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0016645 GO:0016646 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0052873 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FMN_red

Protein Analysis

197

Amino Acids

21.69

Weight (kDa)

5.54

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_red	PF03358	12 - 156	4.1e-39	NADPH-dependent FMN reductase
Flavodoxin_2	PF02525	13 - 108	4.8e-09	Flavodoxin-like fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27890
fragaria_vesca	FvH4_7g03210 FvH4_7g03220
malus_domestica	MD02G1284500.v1.1 MD02G1284800.v1.1 MD07G1050400.v1.1
prunus_persica	Prupe.2G038100_v2.0.a1 Prupe.2G038100_v2.0.a1 Prupe.2G038200_v2.0.a1 Prupe.2G038400_v2.0.a1 Prupe.2G038400_v2.0.a1
pyrus_communis	pycom02g24230 pycom07g03630 pycom07g03640
rosa_chinensis	RchiOBHm_Chr1g0325161 RchiOBHm_Chr1g0325181 RchiOBHm_Chr1g0325221
rosa_laevigata	RLG00000030149 RLG00000030150 RLG00000030153
rosa_multiflora	Rmu_sc0001654.1_g000012 Rmu_sc0001654.1_g000020 Rmu_sc0007742.1_g000013 Rmu_sc0007742.1_g000019 Rmu_sc0007742.1_g000022
rosa_roxburghii	Rroxscaffold_4G00324850 Rroxscaffold_4G00324860 Rroxscaffold_4G00324870
rosa_rugosa	Rorug01G0050100 Rorug01G0050200
rosa_samantha	Rh1AG066000 Rh1AG066200 Rh1BG054100 Rh1BG054200 Rh1BG054300 Rh1CG067600 Rh1DG072400
rosa_wichuraiana	Rw0G010270 Rw1G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	359
AarI	CACCTGC	1 cut(s)	211
Acc36I	ACCTGC	1 cut(s)	211
AccII	CGCG	1 cut(s)	81
AciI	CCGC	4 cut(s)	79, 81, 161, 285
AcsI	RAATTY	1 cut(s)	485
AcuI	CTGAAG	1 cut(s)	314
AcyI	GRCGYC	2 cut(s)	126, 314
AfaI	GTAC	2 cut(s)	140, 269
AfiI	CCNNNNNNNGG	1 cut(s)	528
AgsI	TTSAA	1 cut(s)	463
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	2 cut(s)	68, 215
AluI	AGCT	2 cut(s)	68, 215
Alw26I	GTCTC	2 cut(s)	366, 565
AlwNI	CAGNNNCTG	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	2 cut(s)	82, 114
ApeKI	GCWGC	4 cut(s)	17, 41, 163, 350
ApoI	RAATTY	1 cut(s)	485
Asp700I	GAANNNNTTC	2 cut(s)	216, 467
AvaI	CYCGRG	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	394
BbvI	GCAGC	4 cut(s)	29, 53, 150, 337
BccI	CCATC	4 cut(s)	125, 287, 408, 491
BceAI	ACGGC	1 cut(s)	191
BcgI	CGANNNNNNTGC	4 cut(s)	6, 40, 100, 134
BcoDI	GTCTC	2 cut(s)	366, 565
BfmI	CTRYAG	1 cut(s)	554
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	7 cut(s)	18, 42, 82, 161, 164, 285, 351
BlsI	GCNGC	7 cut(s)	19, 43, 83, 162, 165, 286, 352
BmeT110I	CYCGRG	1 cut(s)	263
BmsI	GCATC	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	462
BsaHI	GRCGYC	2 cut(s)	126, 314
BsaJI	CCNNGG	2 cut(s)	79, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	79, 522
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	441
BseRI	GAGGAG	2 cut(s)	203, 384
BseXI	GCAGC	4 cut(s)	29, 53, 150, 337
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	84, 116
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	366
BslI	CCNNNNNNNGG	1 cut(s)	528
BsmAI	GTCTC	2 cut(s)	366, 565
BsmI	GAATGC	3 cut(s)	304, 467, 469
BsnI	GGCC	2 cut(s)	84, 116
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	1 cut(s)	175
BspACI	CCGC	4 cut(s)	79, 81, 161, 285
BspANI	GGCC	2 cut(s)	84, 116
BspCNI	CTCAG	1 cut(s)	442
BspFNI	CGCG	1 cut(s)	81
BspMAI	CTGCAG	1 cut(s)	558
BspMI	ACCTGC	1 cut(s)	211
BssECI	CCNNGG	2 cut(s)	79, 522
BssMI	GATC	1 cut(s)	175
BssNI	GRCGYC	2 cut(s)	126, 314
BssT1I	CCWWGG	1 cut(s)	522
Bst4CI	ACNGT	3 cut(s)	156, 494, 519
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	2 cut(s)	126, 314
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	1 cut(s)	450
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	246
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	2 cut(s)	366, 565
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 90, 212, 553
BstSFI	CTRYAG	1 cut(s)	554
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	4 cut(s)	29, 53, 150, 337
BstXI	CCANNNNNNTGG	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	84, 116
BtgI	CCRYGG	1 cut(s)	79
BtgZI	GCGATG	2 cut(s)	133, 265
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	499
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	558
CaiI	CAGNNNCTG	1 cut(s)	50
Cfr42I	CCGCGG	1 cut(s)	82
CseI	GACGC	2 cut(s)	115, 303
Csp6I	GTAC	2 cut(s)	139, 268
CviQI	GTAC	2 cut(s)	139, 268
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	522
Eco24I	GRGCYC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	522
EcoT22I	ATGCAT	1 cut(s)	469
EcoT38I	GRGCYC	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	522
FaiI	YATR	4 cut(s)	32, 143, 334, 359
Fnu4HI	GCNGC	7 cut(s)	18, 42, 82, 161, 164, 285, 351
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	7 cut(s)	18, 42, 82, 161, 164, 285, 351
GluI	GCNGC	7 cut(s)	18, 42, 82, 161, 164, 285, 351
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	84, 116
HapII	CCGG	1 cut(s)	366
HgaI	GACGC	2 cut(s)	115, 303
Hin1I	GRCGYC	2 cut(s)	126, 314
HindIII	AAGCTT	2 cut(s)	66, 213
HinfI	GANTC	2 cut(s)	229, 573
HpaII	CCGG	1 cut(s)	366
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	2 cut(s)	225, 294
Hpy188III	TCNNGA	5 cut(s)	179, 233, 263, 318, 460
Hpy8I	GTNNAC	1 cut(s)	386
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	3 cut(s)	156, 494, 519
HpyCH4V	TGCA	5 cut(s)	17, 302, 353, 467, 556
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 90, 212, 553
HpyF3I	CTNAG	1 cut(s)	450
Hsp92I	GRCGYC	2 cut(s)	126, 314
KspI	CCGCGG	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	175
Lsp1109I	GCAGC	4 cut(s)	29, 53, 150, 337
LweI	GCATC	1 cut(s)	255
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	4 cut(s)	50, 238, 307, 395
MfeI	CAATTG	1 cut(s)	303
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	4 cut(s)	271, 303, 354, 485
MlyI	GAGTC	1 cut(s)	567
MmeI	TCCRAC	1 cut(s)	394
Mph1103I	ATGCAT	1 cut(s)	469
MroXI	GAANNNNTTC	2 cut(s)	216, 467
MseI	TTAA	2 cut(s)	441, 533
MspA1I	CMGCKG	2 cut(s)	81, 163
MspI	CCGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	303
Mva1269I	GAATGC	3 cut(s)	304, 467, 469
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	4 cut(s)	14, 90, 212, 553
NdeII	GATC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	469
PaqCI	CACCTGC	1 cut(s)	211
PctI	GAATGC	3 cut(s)	304, 467, 469
PdmI	GAANNNNTTC	2 cut(s)	216, 467
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	7 cut(s)	19, 43, 83, 162, 165, 286, 352
PleI	GAGTC	1 cut(s)	567
PpsI	GAGTC	1 cut(s)	567
PsiI	TTATAA	1 cut(s)	359
PstI	CTGCAG	1 cut(s)	558
PstNI	CAGNNNCTG	1 cut(s)	50
RsaI	GTAC	2 cut(s)	140, 269
RsaNI	GTAC	2 cut(s)	139, 268
SacII	CCGCGG	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	441, 533
SatI	GCNGC	7 cut(s)	18, 42, 82, 161, 164, 285, 351
Sau3AI	GATC	1 cut(s)	175
SbfI	CCTGCAGG	1 cut(s)	558
SchI	GAGTC	1 cut(s)	567
SdaI	CCTGCAGG	1 cut(s)	558
SduI	GDGCHC	1 cut(s)	394
SetI	ASST	7 cut(s)	70, 205, 217, 292, 325, 432, 533
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	1 cut(s)	554
Sfr303I	CCGCGG	1 cut(s)	82
SgrBI	CCGCGG	1 cut(s)	82
Sse8387I	CCTGCAGG	1 cut(s)	558
Sse9I	AATT	4 cut(s)	271, 303, 354, 485
SsiI	CCGC	4 cut(s)	79, 81, 161, 285
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	3 cut(s)	156, 494, 519
TaqI	TCGA	3 cut(s)	120, 210, 489
TasI	AATT	4 cut(s)	271, 303, 354, 485
TatI	WGTACW	2 cut(s)	138, 267
TauI	GCSGC	3 cut(s)	84, 163, 287
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	441, 533
Tru9I	TTAA	2 cut(s)	441, 533
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	4 cut(s)	17, 41, 163, 350
TspDTI	ATGAA	2 cut(s)	427, 528
TspRI	CASTG	1 cut(s)	499
XapI	RAATTY	1 cut(s)	485
XmnI	GAANNNNTTC	2 cut(s)	216, 467
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.