Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002804

Physical Location & Seq

Genomic Coordinates Forward (+)

56533401 .. 56535585

Gene Structure 2185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00324860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAGGCTTCAGTTGCAGCAAAATCGCTCATAAATATCGCAGCAGTTTCTGGTTCTCTTCGTCAAGCTTCCTACAACCGCGGCCTCATTCGCTCTGCGATTGAGATAAGCAAGGCGATCGAGGGCGTCCAGATAGAGTACGTGGACATCACACCGTTGCCGCTGCTCAACACCGATCTGGAGAGCGAGGGGCGTTTTCCACCTGCCGTCGAAGCTTTTCGTCAGAAGATTCGGGAAGCCGATAGCATCCTGTTTGCTTCTCCCGAGTACAATTACTCCATCGCCGCACCTCTAAAGAATGCGATTGACTGGGCATCCAGACCTCCAAATGTATGGGCTGATAAGGCTGCTGCAATTGTAAGTGCGGGAGGAGACTTTGGTGGTGGACGATCCCAATACCATCTTCGCCAAGTTGGAGTTTTCCTTGACCTTCATTTCATTAACAAACCTGAGTTTTTCTTGAATGCATTCCAGCCTCCAGCAAAATTCGACAGTGATGGCAACTTGATTGATGAACAGTCCAAGGAGAGGTTAAAAAAAGTTCTGGTATCCTTGCAGGCATTTACTTTGAGACTCAAAGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0016645 GO:0016646 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0052873 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FMN_red

Protein Analysis

195

Amino Acids

21.42

Weight (kDa)

7.91

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_red	PF03358	12 - 156	1.7e-39	NADPH-dependent FMN reductase
Flavodoxin_2	PF02525	13 - 112	8.6e-09	Flavodoxin-like fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27890
fragaria_vesca	FvH4_7g03210 FvH4_7g03220
malus_domestica	MD02G1284500.v1.1 MD02G1284800.v1.1 MD07G1050400.v1.1
prunus_persica	Prupe.2G038100_v2.0.a1 Prupe.2G038100_v2.0.a1 Prupe.2G038200_v2.0.a1 Prupe.2G038400_v2.0.a1 Prupe.2G038400_v2.0.a1
pyrus_communis	pycom02g24230 pycom07g03630 pycom07g03640
rosa_chinensis	RchiOBHm_Chr1g0325161 RchiOBHm_Chr1g0325181 RchiOBHm_Chr1g0325221
rosa_laevigata	RLG00000030149 RLG00000030150 RLG00000030153
rosa_multiflora	Rmu_sc0001654.1_g000012 Rmu_sc0001654.1_g000020 Rmu_sc0007742.1_g000013 Rmu_sc0007742.1_g000019 Rmu_sc0007742.1_g000022
rosa_roxburghii	Rroxscaffold_4G00324850 Rroxscaffold_4G00324860 Rroxscaffold_4G00324870
rosa_rugosa	Rorug01G0050100 Rorug01G0050200
rosa_samantha	Rh1AG066000 Rh1AG066200 Rh1BG054100 Rh1BG054200 Rh1BG054300 Rh1CG067600 Rh1DG072400
rosa_wichuraiana	Rw0G010270 Rw1G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	211
Acc36I	ACCTGC	1 cut(s)	211
AccII	CGCG	1 cut(s)	81
AciI	CCGC	5 cut(s)	79, 81, 161, 285, 365
AclWI	GGATC	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	485
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	2 cut(s)	140, 269
AfiI	CCNNNNNNNGG	1 cut(s)	528
AgsI	TTSAA	1 cut(s)	463
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	2 cut(s)	68, 215
AluI	AGCT	2 cut(s)	68, 215
Alw26I	GTCTC	2 cut(s)	366, 565
AlwI	GGATC	1 cut(s)	384
AlwNI	CAGNNNCTG	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	5 cut(s)	17, 41, 163, 347, 350
ApoI	RAATTY	1 cut(s)	485
Asp700I	GAANNNNTTC	2 cut(s)	216, 467
AvaI	CYCGRG	1 cut(s)	263
BbvI	GCAGC	5 cut(s)	29, 53, 150, 334, 337
BccI	CCATC	3 cut(s)	287, 408, 491
BceAI	ACGGC	1 cut(s)	191
BcgI	CGANNNNNNTGC	4 cut(s)	6, 40, 100, 134
BciVI	GTATCC	1 cut(s)	559
BcoDI	GTCTC	2 cut(s)	366, 565
BfuAI	ACCTGC	1 cut(s)	211
BfuI	GTATCC	1 cut(s)	559
BisI	GCNGC	8 cut(s)	18, 42, 82, 161, 164, 285, 348, 351
BlsI	GCNGC	8 cut(s)	19, 43, 83, 162, 165, 286, 349, 352
BmeT110I	CYCGRG	1 cut(s)	263
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	2 cut(s)	255, 323
BmuI	ACTGGG	1 cut(s)	319
BpmI	CTGGAG	2 cut(s)	200, 462
BsaAI	YACGTR	1 cut(s)	142
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	79, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	528
Bse1I	ACTGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	79, 522
BseGI	GGATG	2 cut(s)	246, 314
BseLI	CCNNNNNNNGG	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	384
BseXI	GCAGC	5 cut(s)	29, 53, 150, 334, 337
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	84
BsiEI	CGRYCG	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	528
BsmAI	GTCTC	2 cut(s)	366, 565
BsmI	GAATGC	3 cut(s)	304, 467, 469
BsnI	GGCC	1 cut(s)	84
BsoBI	CYCGRG	1 cut(s)	263
Bsp143I	GATC	3 cut(s)	117, 175, 389
BspACI	CCGC	5 cut(s)	79, 81, 161, 285, 365
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	1 cut(s)	442
BspFNI	CGCG	1 cut(s)	81
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	79, 522
BssMI	GATC	3 cut(s)	117, 175, 389
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	522
Bst4CI	ACNGT	3 cut(s)	156, 494, 519
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	126
BstBAI	YACGTR	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	1 cut(s)	450
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	2 cut(s)	246, 314
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	3 cut(s)	120, 178, 392
BstMAI	GTCTC	2 cut(s)	366, 565
BstMBI	GATC	3 cut(s)	117, 175, 389
BstMCI	CGRYCG	1 cut(s)	120
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 90, 212, 344
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	5 cut(s)	29, 53, 150, 334, 337
BstXI	CCANNNNNNTGG	1 cut(s)	333
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	1 cut(s)	84
BtgI	CCRYGG	1 cut(s)	79
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	246, 314
BtsIMutI	CAGTG	1 cut(s)	499
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	558
CaiI	CAGNNNCTG	1 cut(s)	50
Cfr42I	CCGCGG	1 cut(s)	82
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	139, 268
CviJI	RGCY	8 cut(s)	8, 68, 84, 215, 239, 338, 347, 475
CviKI_1	RGCY	8 cut(s)	8, 68, 84, 215, 239, 338, 347, 475
CviQI	GTAC	2 cut(s)	139, 268
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	3 cut(s)	119, 177, 391
DpnII	GATC	3 cut(s)	117, 175, 389
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	522
Eco88I	CYCGRG	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	522
EcoT22I	ATGCAT	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	522
FaiI	YATR	2 cut(s)	32, 334
FauI	CCCGC	1 cut(s)	358
Fnu4HI	GCNGC	8 cut(s)	18, 42, 82, 161, 164, 285, 348, 351
FokI	GGATG	2 cut(s)	233, 301
Fsp4HI	GCNGC	8 cut(s)	18, 42, 82, 161, 164, 285, 348, 351
GluI	GCNGC	8 cut(s)	18, 42, 82, 161, 164, 285, 348, 351
GsuI	CTGGAG	2 cut(s)	200, 462
HaeIII	GGCC	1 cut(s)	84
HgaI	GACGC	1 cut(s)	115
Hin1I	GRCGYC	1 cut(s)	126
HindIII	AAGCTT	2 cut(s)	66, 213
HinfI	GANTC	2 cut(s)	229, 573
Hpy166II	GTNNAC	2 cut(s)	145, 386
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	6 cut(s)	130, 179, 233, 263, 318, 460
Hpy8I	GTNNAC	2 cut(s)	145, 386
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	3 cut(s)	156, 494, 519
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	4 cut(s)	17, 353, 467, 556
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 90, 212, 344
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	126
KspI	CCGCGG	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	117, 175, 389
Lsp1109I	GCAGC	5 cut(s)	29, 53, 150, 334, 337
LweI	GCATC	2 cut(s)	255, 323
MaeII	ACGT	1 cut(s)	141
MalI	GATC	3 cut(s)	119, 177, 391
MboI	GATC	3 cut(s)	117, 175, 389
MboII	GAAGA	3 cut(s)	50, 238, 395
MfeI	CAATTG	1 cut(s)	354
MluCI	AATT	3 cut(s)	271, 354, 485
MlyI	GAGTC	1 cut(s)	567
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	8 cut(s)	95, 115, 181, 300, 333, 362, 486, 522
Mph1103I	ATGCAT	1 cut(s)	469
MroXI	GAANNNNTTC	2 cut(s)	216, 467
MseI	TTAA	2 cut(s)	441, 533
MspA1I	CMGCKG	2 cut(s)	81, 163
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	3 cut(s)	304, 467, 469
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	4 cut(s)	14, 90, 212, 344
NdeII	GATC	3 cut(s)	117, 175, 389
NsiI	ATGCAT	1 cut(s)	469
PaqCI	CACCTGC	1 cut(s)	211
PctI	GAATGC	3 cut(s)	304, 467, 469
PdmI	GAANNNNTTC	2 cut(s)	216, 467
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	8 cut(s)	19, 43, 83, 162, 165, 286, 349, 352
Ple19I	CGATCG	1 cut(s)	120
PleI	GAGTC	1 cut(s)	567
PpsI	GAGTC	1 cut(s)	567
Ppu21I	YACGTR	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	50
PvuI	CGATCG	1 cut(s)	120
RsaI	GTAC	2 cut(s)	140, 269
RsaNI	GTAC	2 cut(s)	139, 268
SacII	CCGCGG	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	441, 533
SatI	GCNGC	8 cut(s)	18, 42, 82, 161, 164, 285, 348, 351
Sau3AI	GATC	3 cut(s)	117, 175, 389
SchI	GAGTC	1 cut(s)	567
SetI	ASST	9 cut(s)	70, 144, 205, 217, 292, 325, 432, 451, 533
SfaNI	GCATC	2 cut(s)	255, 323
Sfr303I	CCGCGG	1 cut(s)	82
SgrBI	CCGCGG	1 cut(s)	82
Sse9I	AATT	3 cut(s)	271, 354, 485
SsiI	CCGC	5 cut(s)	79, 81, 161, 285, 365
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	3 cut(s)	156, 494, 519
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	3 cut(s)	120, 210, 489
TasI	AATT	3 cut(s)	271, 354, 485
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	3 cut(s)	84, 163, 287
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	441, 533
Tru9I	TTAA	2 cut(s)	441, 533
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	5 cut(s)	17, 41, 163, 347, 350
TspDTI	ATGAA	3 cut(s)	422, 427, 528
TspRI	CASTG	1 cut(s)	499
XapI	RAATTY	1 cut(s)	485
XmnI	GAANNNNTTC	2 cut(s)	216, 467
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.