RchiOBHm_Chr1g0325161

NADPH quinone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002804
Physical Location & Seq
Reverse (-)
13083523 .. 13084241
719 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55491

Sequence Viewer

Length: 363 bp
ATGGTTTATTGTTGTAGATTCTGCTATTTCCTAAACATTTCCTTCAACTTGACTATACCAGCACCTCTGAAGAATGCAATTGACTGGGCGTCCAGACCTCCAAATGTATGGGCTGATAAGGGTGCTGCAATTATAAGTGCCGGAGGAGACTTTGGTAGTGGACGAGCCCAATACCATCTTCGCCAAGTTGGAGTTTTCCTTAACCTTCATTTCATTAACAAGCCTGAGTTTTTCTTGAATGCATTCCAGCCTCCAGAAAAATTCGACAGTGATGGCAACTTGATTGATGAACAGTCCAAGGAGAGGTTAAAAAAAGTTCTGCTGTCCCTGCAGGCATTTACTTTGAGACTCAAAGGAAAGTGA

Protein Analysis

120

Amino Acids

13.6

Weight (kDa)

9.3

Isoelectric Point (pI)

31.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_red PF03358 15 - 81 4.3e-15 NADPH-dependent FMN reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 134
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 303
AgsI TTSAA 2 cut(s) 46, 238
AhdI GACNNNNNGTC 1 cut(s) 88
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
Alw26I GTCTC 2 cut(s) 141, 340
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 260
Asp700I GAANNNNTTC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 112
BccI CCATC 2 cut(s) 183, 266
BcoDI GTCTC 2 cut(s) 141, 340
BfmI CTRYAG 1 cut(s) 329
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BmeRI GACNNNNNGTC 1 cut(s) 88
BmrI ACTGGG 1 cut(s) 94
BmuI ACTGGG 1 cut(s) 94
BpmI CTGGAG 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 303
Bse1I ACTGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 112
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 303
BsmAI GTCTC 2 cut(s) 141, 340
BsmFI GGGAC 1 cut(s) 310
BsmI GAATGC 3 cut(s) 79, 242, 244
Bsp1286I GDGCHC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 217
BspMAI CTGCAG 1 cut(s) 333
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 297
BssNI GRCGYC 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 297
Bst4CI ACNGT 2 cut(s) 269, 294
BstACI GRCGYC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 1 cut(s) 225
BstMAI GTCTC 2 cut(s) 141, 340
BstMWI GCNNNNNNNGC 1 cut(s) 328
BstSFI CTRYAG 1 cut(s) 329
BstV1I GCAGC 1 cut(s) 112
BstXI CCANNNNNNTGG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 333
CseI GACGC 1 cut(s) 78
CviJI RGCY 4 cut(s) 113, 167, 223, 250
CviKI_1 RGCY 4 cut(s) 113, 167, 223, 250
DdeI CTNAG 1 cut(s) 225
DriI GACNNNNNGTC 1 cut(s) 88
Eam1105I GACNNNNNGTC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 297
EcoT22I ATGCAT 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 297
FaiI YATR 3 cut(s) 56, 109, 134
FaqI GGGAC 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 126
FriOI GRGCYC 1 cut(s) 169
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
GsuI CTGGAG 1 cut(s) 237
HapII CCGG 1 cut(s) 141
HgaI GACGC 1 cut(s) 78
Hin1I GRCGYC 1 cut(s) 89
HinfI GANTC 2 cut(s) 18, 348
HpaII CCGG 1 cut(s) 141
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 3 cut(s) 93, 235, 254
Hpy8I GTNNAC 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 52, 215
HpyCH4III ACNGT 2 cut(s) 269, 294
HpyCH4V TGCA 4 cut(s) 77, 128, 242, 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 328
HpyF3I CTNAG 1 cut(s) 225
Hsp92I GRCGYC 1 cut(s) 89
LpnPI CCDG 9 cut(s) 70, 72, 106, 154, 237, 260, 267, 317, 341
Lsp1109I GCAGC 1 cut(s) 112
MboII GAAGA 2 cut(s) 82, 170
MfeI CAATTG 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 169
MluCI AATT 3 cut(s) 78, 129, 260
MlyI GAGTC 1 cut(s) 342
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 5 cut(s) 75, 108, 137, 261, 297
Mph1103I ATGCAT 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 3 cut(s) 201, 216, 308
MspI CCGG 1 cut(s) 141
MunI CAATTG 1 cut(s) 78
Mva1269I GAATGC 3 cut(s) 79, 242, 244
MwoI GCNNNNNNNGC 1 cut(s) 328
NsiI ATGCAT 1 cut(s) 244
PctI GAATGC 3 cut(s) 79, 242, 244
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 342
PpsI GAGTC 1 cut(s) 342
PsiI TTATAA 1 cut(s) 134
PstI CTGCAG 1 cut(s) 333
SaqAI TTAA 3 cut(s) 201, 216, 308
SatI GCNGC 1 cut(s) 126
SbfI CCTGCAGG 1 cut(s) 333
SchI GAGTC 1 cut(s) 342
SdaI CCTGCAGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 169
SetI ASST 4 cut(s) 67, 100, 207, 308
SfcI CTRYAG 1 cut(s) 329
Sse8387I CCTGCAGG 1 cut(s) 333
Sse9I AATT 3 cut(s) 78, 129, 260
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 2 cut(s) 269, 294
TaqI TCGA 1 cut(s) 264
TasI AATT 3 cut(s) 78, 129, 260
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 3 cut(s) 201, 216, 308
Tru9I TTAA 3 cut(s) 201, 216, 308
TscAI CASTG 1 cut(s) 274
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 3 cut(s) 197, 202, 303
TspRI CASTG 1 cut(s) 274
XapI RAATTY 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 242
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.