MD02G1284800.v1.1

NADPH quinone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0002804
Physical Location & Seq
Forward (+)
34129333 .. 34129512
180 bp
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UTR
Exon/CDS
Intron
MD02G1284800.v1.1.491

Sequence Viewer

Length: 180 bp
ATGCACAATGCAGCACCGCTAAAGAATGCACTTGACTGGGCATCAAGACCCCCAAATGTTTGGGCTGACAGGGCTGCTGCAATTATAAACGCTTCTGGAGGCTCCGGCGGTTCACGATCCCAATACCATCTTCGCCAAATTGGAGTCTTCCTTGACCTTCATTTCATCAACAAGCCATAG

Protein Analysis

60

Amino Acids

6.41

Weight (kDa)

10.26

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_red PF03358 5 - 58 4.3e-12 NADPH-dependent FMN reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 86
AciI CCGC 2 cut(s) 17, 108
AclWI GGATC 1 cut(s) 111
AjuI GAANNNNNNNTTGG 2 cut(s) 114, 146
AlwI GGATC 1 cut(s) 111
ApeKI GCWGC 3 cut(s) 11, 74, 77
BbsI GAAGAC 1 cut(s) 139
BbvI GCAGC 3 cut(s) 23, 61, 64
BccI CCATC 1 cut(s) 135
BisI GCNGC 3 cut(s) 12, 75, 78
BlsI GCNGC 3 cut(s) 13, 76, 79
BmiI GGNNCC 1 cut(s) 103
BmrI ACTGGG 1 cut(s) 46
BmsI GCATC 1 cut(s) 50
BmuI ACTGGG 1 cut(s) 46
BpiI GAAGAC 1 cut(s) 139
BpmI CTGGAG 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 41
BseXI GCAGC 3 cut(s) 23, 61, 64
BsiSI CCGG 1 cut(s) 105
BsmI GAATGC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 2 cut(s) 17, 108
BspLI GGNNCC 1 cut(s) 103
BspPI GGATC 1 cut(s) 111
BsrI ACTGG 1 cut(s) 41
BssMI GATC 1 cut(s) 116
BstKTI GATC 1 cut(s) 119
BstMBI GATC 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstV1I GCAGC 3 cut(s) 23, 61, 64
BstV2I GAAGAC 1 cut(s) 139
BstXI CCANNNNNNTGG 1 cut(s) 60
CviJI RGCY 4 cut(s) 65, 74, 102, 175
CviKI_1 RGCY 4 cut(s) 65, 74, 102, 175
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
FaiI YATR 2 cut(s) 86, 178
Fnu4HI GCNGC 3 cut(s) 12, 75, 78
Fsp4HI GCNGC 3 cut(s) 12, 75, 78
GluI GCNGC 3 cut(s) 12, 75, 78
GsuI CTGGAG 1 cut(s) 117
HapII CCGG 1 cut(s) 105
HinfI GANTC 1 cut(s) 144
HpaII CCGG 1 cut(s) 105
Hpy166II GTNNAC 1 cut(s) 113
Hpy188III TCNNGA 3 cut(s) 45, 96, 114
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 167
HpyCH4V TGCA 4 cut(s) 4, 11, 29, 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
Kzo9I GATC 1 cut(s) 116
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 4 cut(s) 22, 55, 81, 118
Lsp1109I GCAGC 3 cut(s) 23, 61, 64
LweI GCATC 1 cut(s) 50
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 2 cut(s) 122, 139
MluCI AATT 2 cut(s) 81, 138
MlyI GAGTC 1 cut(s) 153
MnlI CCTC 1 cut(s) 92
MspI CCGG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 1 cut(s) 116
NlaIV GGNNCC 1 cut(s) 103
PctI GAATGC 1 cut(s) 31
PkrI GCNGC 3 cut(s) 13, 76, 79
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PsiI TTATAA 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 103
SatI GCNGC 3 cut(s) 12, 75, 78
Sau3AI GATC 1 cut(s) 116
SchI GAGTC 1 cut(s) 153
SetI ASST 1 cut(s) 159
SfaNI GCATC 1 cut(s) 50
SgeI CNNG 8 cut(s) 44, 49, 57, 82, 108, 117, 126, 164
Sse9I AATT 2 cut(s) 81, 138
SsiI CCGC 2 cut(s) 17, 108
TasI AATT 2 cut(s) 81, 138
TseI GCWGC 3 cut(s) 11, 74, 77
TspDTI ATGAA 2 cut(s) 149, 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.