Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002804

Physical Location & Seq

Genomic Coordinates Reverse (-)

4106955 .. 4110871

Gene Structure 3917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G038100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAGGCTGCTTCCGTTTCCGCATCATCGCTCATAAGAGTTGCAGCTCTTTCTGGGTCTCTTCGTAAATCTTCCTACAACCGTGGTCTAATTCGCTCTGCGATTGAGATAAGCAAGACGTCGATCAACGGCCTGCAGATAGAGTACATAGACATCTCACCGTTGCCACTGCTGAATACAGATCTGGAAGGCGAGGGGAGTTTTCCACCTGCCATCGAAGCTTTTCGTCAGAAGATTCTGGAAGCTGATAGCATCCTCTTTGCTTCTCCCGAGTACAATTACTCCTTCACCGCACCTCTAAAGAATGCAATTGACTGGGCGTCAAGACCACCAAATGTTTGGGCTGATAAGGCTGCCGCAATTGTAAGTGCCGGAGGCGACTTTGGCGGTGGACGATCGCAATATCATCTTCGCCAAGTTGGAGTGTTTCTTGACCTTCATTTCATTAACAAGCCCGAGTTTTTCTTGAACGCATTCCAGCCTCCTGCAAAGTTTGACAGTGATGGCAACTTGATTGATGAACAGGCCAAGGAGAGATTAAAAGAAGTTCTTCTCTCCTTGCAGGCATTTAGCTTGAAACTTCATCAAAACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0016645 GO:0016646 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0052873 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FMN_red

Protein Analysis

199

Amino Acids

21.73

Weight (kDa)

5.64

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27890
fragaria_vesca	FvH4_7g03210 FvH4_7g03220
malus_domestica	MD02G1284500.v1.1 MD02G1284800.v1.1 MD07G1050400.v1.1
prunus_persica	Prupe.2G038100_v2.0.a1 Prupe.2G038100_v2.0.a1 Prupe.2G038200_v2.0.a1 Prupe.2G038400_v2.0.a1 Prupe.2G038400_v2.0.a1
pyrus_communis	pycom02g24230 pycom07g03630 pycom07g03640
rosa_chinensis	RchiOBHm_Chr1g0325161 RchiOBHm_Chr1g0325181 RchiOBHm_Chr1g0325221
rosa_laevigata	RLG00000030149 RLG00000030150 RLG00000030153
rosa_multiflora	Rmu_sc0001654.1_g000012 Rmu_sc0001654.1_g000020 Rmu_sc0007742.1_g000013 Rmu_sc0007742.1_g000019 Rmu_sc0007742.1_g000022
rosa_roxburghii	Rroxscaffold_4G00324850 Rroxscaffold_4G00324860 Rroxscaffold_4G00324870
rosa_rugosa	Rorug01G0050100 Rorug01G0050200
rosa_samantha	Rh1AG066000 Rh1AG066200 Rh1BG054100 Rh1BG054200 Rh1BG054300 Rh1CG067600 Rh1DG072400
rosa_wichuraiana	Rw0G010270 Rw1G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	217
AatII	GACGTC	1 cut(s)	122
Acc36I	ACCTGC	1 cut(s)	217
AciI	CCGC	4 cut(s)	21, 291, 357, 387
AcyI	GRCGYC	2 cut(s)	119, 320
AfaI	GTAC	2 cut(s)	146, 275
AgsI	TTSAA	2 cut(s)	469, 577
AhdI	GACNNNNNGTC	1 cut(s)	319
AluBI	AGCT	4 cut(s)	47, 221, 245, 573
AluI	AGCT	4 cut(s)	47, 221, 245, 573
Alw26I	GTCTC	1 cut(s)	63
Ama87I	CYCGRG	2 cut(s)	269, 455
AoxI	GGCC	2 cut(s)	130, 525
ApeKI	GCWGC	3 cut(s)	8, 44, 353
Asp700I	GAANNNNTTC	3 cut(s)	222, 473, 549
AsuHPI	GGTGA	2 cut(s)	150, 280
AvaI	CYCGRG	2 cut(s)	269, 455
BbvI	GCAGC	2 cut(s)	56, 340
BccI	CCATC	2 cut(s)	221, 497
BceAI	ACGGC	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	217
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	4 cut(s)	9, 45, 354, 357
BlsI	GCNGC	4 cut(s)	10, 46, 355, 358
BmeRI	GACNNNNNGTC	1 cut(s)	319
BmeT110I	CYCGRG	2 cut(s)	269, 455
BmrI	ACTGGG	1 cut(s)	325
BmsI	GCATC	2 cut(s)	32, 261
BmuI	ACTGGG	1 cut(s)	325
BsaHI	GRCGYC	2 cut(s)	119, 320
BsaI	GGTCTC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	82, 528
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bse1I	ACTGG	1 cut(s)	320
BseDI	CCNNGG	2 cut(s)	82, 528
BseGI	GGATG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	320
BseXI	GCAGC	2 cut(s)	56, 340
Bsh1285I	CGRYCG	1 cut(s)	398
BshFI	GGCC	2 cut(s)	132, 527
BsiEI	CGRYCG	1 cut(s)	398
BsiHKCI	CYCGRG	2 cut(s)	269, 455
BsiSI	CCGG	1 cut(s)	372
BsmAI	GTCTC	1 cut(s)	63
BsmI	GAATGC	2 cut(s)	310, 473
BsnI	GGCC	2 cut(s)	132, 527
Bso31I	GGTCTC	1 cut(s)	63
BsoBI	CYCGRG	2 cut(s)	269, 455
Bsp143I	GATC	3 cut(s)	123, 181, 395
BspACI	CCGC	4 cut(s)	21, 291, 357, 387
BspANI	GGCC	2 cut(s)	132, 527
BspMAI	CTGCAG	1 cut(s)	138
BspMI	ACCTGC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	320
BssECI	CCNNGG	2 cut(s)	82, 528
BssMI	GATC	3 cut(s)	123, 181, 395
BssNI	GRCGYC	2 cut(s)	119, 320
BssT1I	CCWWGG	1 cut(s)	528
Bst4CI	ACNGT	3 cut(s)	83, 162, 500
Bst6I	CTCTTC	1 cut(s)	66
BstACI	GRCGYC	2 cut(s)	119, 320
BstC8I	GCNNGC	2 cut(s)	134, 564
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	252
BstKTI	GATC	3 cut(s)	126, 184, 398
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	3 cut(s)	123, 181, 395
BstMCI	CGRYCG	1 cut(s)	398
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 350, 384
BstSFI	CTRYAG	1 cut(s)	134
BstV1I	GCAGC	2 cut(s)	56, 340
BstX2I	RGATCY	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	132, 527
BtgI	CCRYGG	1 cut(s)	82
BtgZI	GCGATG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	252
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	2 cut(s)	167, 505
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	2 cut(s)	134, 564
CseI	GACGC	1 cut(s)	309
Csp6I	GTAC	2 cut(s)	145, 274
CviQI	GTAC	2 cut(s)	145, 274
DpnI	GATC	3 cut(s)	125, 183, 397
DpnII	GATC	3 cut(s)	123, 181, 395
DriI	GACNNNNNGTC	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	66
Eam1105I	GACNNNNNGTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	528
Eco31I	GGTCTC	1 cut(s)	63
Eco88I	CYCGRG	2 cut(s)	269, 455
EcoT14I	CCWWGG	1 cut(s)	528
ErhI	CCWWGG	1 cut(s)	528
FaiI	YATR	2 cut(s)	35, 149
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
Fnu4HI	GCNGC	4 cut(s)	9, 45, 354, 357
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	4 cut(s)	9, 45, 354, 357
GluI	GCNGC	4 cut(s)	9, 45, 354, 357
HaeIII	GGCC	2 cut(s)	132, 527
HapII	CCGG	1 cut(s)	372
HgaI	GACGC	1 cut(s)	309
Hin1I	GRCGYC	2 cut(s)	119, 320
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	372
HphI	GGTGA	2 cut(s)	150, 280
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	1 cut(s)	231
Hpy188III	TCNNGA	6 cut(s)	185, 239, 269, 324, 431, 466
Hpy8I	GTNNAC	1 cut(s)	392
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	3 cut(s)	182, 295, 446
HpyCH4III	ACNGT	3 cut(s)	83, 162, 500
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	5 cut(s)	44, 136, 308, 488, 562
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 350, 384
HpySE526I	ACGT	1 cut(s)	119
Hsp92I	GRCGYC	2 cut(s)	119, 320
Kzo9I	GATC	3 cut(s)	123, 181, 395
Lsp1109I	GCAGC	2 cut(s)	56, 340
LweI	GCATC	2 cut(s)	32, 261
MaeII	ACGT	1 cut(s)	119
MalI	GATC	3 cut(s)	125, 183, 397
MboI	GATC	3 cut(s)	123, 181, 395
MboII	GAAGA	5 cut(s)	53, 63, 244, 401, 542
MfeI	CAATTG	2 cut(s)	309, 360
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	4 cut(s)	90, 277, 309, 360
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	5 cut(s)	187, 266, 306, 368, 492
MroXI	GAANNNNTTC	3 cut(s)	222, 473, 549
MseI	TTAA	2 cut(s)	447, 539
MspI	CCGG	1 cut(s)	372
MunI	CAATTG	2 cut(s)	309, 360
Mva1269I	GAATGC	2 cut(s)	310, 473
MwoI	GCNNNNNNNGC	3 cut(s)	218, 350, 384
NdeII	GATC	3 cut(s)	123, 181, 395
PaqCI	CACCTGC	1 cut(s)	217
PctI	GAATGC	2 cut(s)	310, 473
PdmI	GAANNNNTTC	3 cut(s)	222, 473, 549
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	4 cut(s)	10, 46, 355, 358
Ple19I	CGATCG	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	181
PvuI	CGATCG	1 cut(s)	398
RsaI	GTAC	2 cut(s)	146, 275
RsaNI	GTAC	2 cut(s)	145, 274
SaqAI	TTAA	2 cut(s)	447, 539
SatI	GCNGC	4 cut(s)	9, 45, 354, 357
Sau3AI	GATC	3 cut(s)	123, 181, 395
SetI	ASST	8 cut(s)	49, 122, 211, 223, 247, 298, 438, 575
SfaNI	GCATC	2 cut(s)	32, 261
SfcI	CTRYAG	1 cut(s)	134
Sse9I	AATT	4 cut(s)	90, 277, 309, 360
SsiI	CCGC	4 cut(s)	21, 291, 357, 387
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	3 cut(s)	83, 162, 500
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	2 cut(s)	122, 216
TasI	AATT	4 cut(s)	90, 277, 309, 360
TatI	WGTACW	2 cut(s)	144, 273
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	2 cut(s)	447, 539
Tru9I	TTAA	2 cut(s)	447, 539
TscAI	CASTG	2 cut(s)	174, 505
TseI	GCWGC	3 cut(s)	8, 44, 353
TspDTI	ATGAA	4 cut(s)	428, 433, 534, 572
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	2 cut(s)	174, 505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	336
XmnI	GAANNNNTTC	3 cut(s)	222, 473, 549
ZraI	GACGTC	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.