Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00428

Orthogroup ID

OG0002804

Physical Location & Seq

Genomic Coordinates Reverse (-)

35797 .. 37839

Gene Structure 2043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G010270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAGGCTTCAGTTGCAGCAAAATCGCTCGTAAAAATCGCAGCAGTTTCTGGTTCTCTTCGTCAAGGTTCCTACAACCGCGGCCTCATTCGCTCTGCGATTGAGATAAGCAAGGCCATCGAGGGCGTCCAAATAGAGTACATAGACATCGCACCGTTGCCACTGCTCAACACCGATTTGGAAGGCGAGGAGAGTTTTCCACCTGCCGTCGAAGCTTTTCGTCAGAAGATTCGGGAAGCCGATAGCATCCTCTTTGCTTCTCCCGAGTACAATTACTCCATCGCCGCACCTCTGAAGAATGCAATTGACTGGGCGTCCAGACCTCCAAATGTATGGGCTGATAAGGGTGCTGCAATTATAAGTGCCGGAGGAGACTTTGGTAGTGGACGAGCCCAATACCATCTTCGCCAAGTTGGAGTTTTCCTTGACCTTCATTTCATTAACAAGCCTGAAAAATTCGACAGTGATGGCAACTTGATTGATGAACAGTCCAAGGAGAGGTTAAAAAAAGTTCTGCTGTCCCTGCAGGCATTTACTTTGAGACTCAAAGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0016645 GO:0016646 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0052873 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FMN_red

Protein Analysis

185

Amino Acids

20.26

Weight (kDa)

6.75

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_red	PF03358	11 - 150	5.5e-39	NADPH-dependent FMN reductase
Flavodoxin_2	PF02525	12 - 108	2.4e-09	Flavodoxin-like fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27890
fragaria_vesca	FvH4_7g03210 FvH4_7g03220
malus_domestica	MD02G1284500.v1.1 MD02G1284800.v1.1 MD07G1050400.v1.1
prunus_persica	Prupe.2G038100_v2.0.a1 Prupe.2G038100_v2.0.a1 Prupe.2G038200_v2.0.a1 Prupe.2G038400_v2.0.a1 Prupe.2G038400_v2.0.a1
pyrus_communis	pycom02g24230 pycom07g03630 pycom07g03640
rosa_chinensis	RchiOBHm_Chr1g0325161 RchiOBHm_Chr1g0325181 RchiOBHm_Chr1g0325221
rosa_laevigata	RLG00000030149 RLG00000030150 RLG00000030153
rosa_multiflora	Rmu_sc0001654.1_g000012 Rmu_sc0001654.1_g000020 Rmu_sc0007742.1_g000013 Rmu_sc0007742.1_g000019 Rmu_sc0007742.1_g000022
rosa_roxburghii	Rroxscaffold_4G00324850 Rroxscaffold_4G00324860 Rroxscaffold_4G00324870
rosa_rugosa	Rorug01G0050100 Rorug01G0050200
rosa_samantha	Rh1AG066000 Rh1AG066200 Rh1BG054100 Rh1BG054200 Rh1BG054300 Rh1CG067600 Rh1DG072400
rosa_wichuraiana	Rw0G010270 Rw1G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	359
AarI	CACCTGC	1 cut(s)	211
Acc36I	ACCTGC	1 cut(s)	211
AccII	CGCG	1 cut(s)	81
AciI	CCGC	3 cut(s)	79, 81, 285
AcsI	RAATTY	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	314
AcyI	GRCGYC	2 cut(s)	126, 314
AfaI	GTAC	2 cut(s)	140, 269
AfiI	CCNNNNNNNGG	1 cut(s)	498
AhdI	GACNNNNNGTC	1 cut(s)	313
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw26I	GTCTC	2 cut(s)	366, 535
AlwNI	CAGNNNCTG	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	2 cut(s)	82, 114
ApeKI	GCWGC	3 cut(s)	17, 41, 350
ApoI	RAATTY	1 cut(s)	455
Asp700I	GAANNNNTTC	1 cut(s)	216
AvaI	CYCGRG	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	394
BbvI	GCAGC	3 cut(s)	29, 53, 337
BccI	CCATC	4 cut(s)	125, 287, 408, 461
BceAI	ACGGC	1 cut(s)	191
BcgI	CGANNNNNNTGC	4 cut(s)	6, 40, 100, 134
BcoDI	GTCTC	2 cut(s)	366, 535
BfmI	CTRYAG	1 cut(s)	524
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	5 cut(s)	18, 42, 82, 285, 351
BlsI	GCNGC	5 cut(s)	19, 43, 83, 286, 352
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmeT110I	CYCGRG	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	70
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	1 cut(s)	255
BmuI	ACTGGG	1 cut(s)	319
BsaHI	GRCGYC	2 cut(s)	126, 314
BsaJI	CCNNGG	2 cut(s)	79, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	498
Bse1I	ACTGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	79, 492
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	2 cut(s)	203, 384
BseXI	GCAGC	3 cut(s)	29, 53, 337
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	84, 116
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	505
BslI	CCNNNNNNNGG	1 cut(s)	498
BsmAI	GTCTC	2 cut(s)	366, 535
BsmFI	GGGAC	1 cut(s)	505
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	84, 116
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	394
BspACI	CCGC	3 cut(s)	79, 81, 285
BspANI	GGCC	2 cut(s)	84, 116
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	70
BspMAI	CTGCAG	1 cut(s)	528
BspMI	ACCTGC	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	79, 492
BssNI	GRCGYC	2 cut(s)	126, 314
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	3 cut(s)	156, 464, 489
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	2 cut(s)	126, 314
BstC8I	GCNNGC	1 cut(s)	528
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	246
BstFNI	CGCG	1 cut(s)	81
BstMAI	GTCTC	2 cut(s)	366, 535
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 90, 212, 523
BstSFI	CTRYAG	1 cut(s)	524
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	29, 53, 337
BstXI	CCANNNNNNTGG	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	84, 116
BtgI	CCRYGG	1 cut(s)	79
BtgZI	GCGATG	2 cut(s)	133, 265
BtsCI	GGATG	1 cut(s)	246
BtsI	GCAGTG	1 cut(s)	161
BtsIMutI	CAGTG	2 cut(s)	161, 469
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	528
CaiI	CAGNNNCTG	1 cut(s)	50
Cfr42I	CCGCGG	1 cut(s)	82
CseI	GACGC	2 cut(s)	115, 303
Csp6I	GTAC	2 cut(s)	139, 268
CviJI	RGCY	8 cut(s)	8, 84, 116, 215, 239, 338, 392, 448
CviKI_1	RGCY	8 cut(s)	8, 84, 116, 215, 239, 338, 392, 448
CviQI	GTAC	2 cut(s)	139, 268
DriI	GACNNNNNGTC	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	63
Eam1105I	GACNNNNNGTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	492
Eco24I	GRGCYC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	492
FaiI	YATR	3 cut(s)	143, 334, 359
FaqI	GGGAC	1 cut(s)	505
Fnu4HI	GCNGC	5 cut(s)	18, 42, 82, 285, 351
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	5 cut(s)	18, 42, 82, 285, 351
GluI	GCNGC	5 cut(s)	18, 42, 82, 285, 351
HaeIII	GGCC	2 cut(s)	84, 116
HapII	CCGG	1 cut(s)	366
HgaI	GACGC	2 cut(s)	115, 303
Hin1I	GRCGYC	2 cut(s)	126, 314
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	2 cut(s)	229, 543
HpaII	CCGG	1 cut(s)	366
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	2 cut(s)	225, 294
Hpy188III	TCNNGA	3 cut(s)	233, 263, 318
Hpy8I	GTNNAC	1 cut(s)	386
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	2 cut(s)	176, 440
HpyCH4III	ACNGT	3 cut(s)	156, 464, 489
HpyCH4V	TGCA	4 cut(s)	17, 302, 353, 526
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 90, 212, 523
Hsp92I	GRCGYC	2 cut(s)	126, 314
KspI	CCGCGG	1 cut(s)	82
LpnPI	CCDG	8 cut(s)	36, 216, 295, 331, 379, 462, 512, 536
Lsp1109I	GCAGC	3 cut(s)	29, 53, 337
LweI	GCATC	1 cut(s)	255
MboII	GAAGA	4 cut(s)	50, 238, 307, 395
MfeI	CAATTG	1 cut(s)	303
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	4 cut(s)	271, 303, 354, 455
MlyI	GAGTC	1 cut(s)	537
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	8 cut(s)	95, 115, 181, 260, 300, 333, 362, 492
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	2 cut(s)	441, 503
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	303
Mva1269I	GAATGC	1 cut(s)	304
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	4 cut(s)	14, 90, 212, 523
NlaIV	GGNNCC	1 cut(s)	70
PaqCI	CACCTGC	1 cut(s)	211
PctI	GAATGC	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	5 cut(s)	19, 43, 83, 286, 352
PleI	GAGTC	1 cut(s)	537
PpsI	GAGTC	1 cut(s)	537
PsiI	TTATAA	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	70
PstI	CTGCAG	1 cut(s)	528
PstNI	CAGNNNCTG	1 cut(s)	50
RsaI	GTAC	2 cut(s)	140, 269
RsaNI	GTAC	2 cut(s)	139, 268
SacII	CCGCGG	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	441, 503
SatI	GCNGC	5 cut(s)	18, 42, 82, 285, 351
SbfI	CCTGCAGG	1 cut(s)	528
SchI	GAGTC	1 cut(s)	537
SdaI	CCTGCAGG	1 cut(s)	528
SduI	GDGCHC	1 cut(s)	394
SetI	ASST	7 cut(s)	70, 205, 217, 292, 325, 432, 503
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	1 cut(s)	524
Sfr303I	CCGCGG	1 cut(s)	82
SgrBI	CCGCGG	1 cut(s)	82
Sse8387I	CCTGCAGG	1 cut(s)	528
Sse9I	AATT	4 cut(s)	271, 303, 354, 455
SsiI	CCGC	3 cut(s)	79, 81, 285
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	3 cut(s)	156, 464, 489
TaqI	TCGA	3 cut(s)	120, 210, 459
TasI	AATT	4 cut(s)	271, 303, 354, 455
TatI	WGTACW	2 cut(s)	138, 267
TauI	GCSGC	2 cut(s)	84, 287
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	441, 503
Tru9I	TTAA	2 cut(s)	441, 503
TscAI	CASTG	2 cut(s)	168, 469
TseI	GCWGC	3 cut(s)	17, 41, 350
TspDTI	ATGAA	3 cut(s)	422, 427, 498
TspRI	CASTG	2 cut(s)	168, 469
XapI	RAATTY	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.