Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002804

Physical Location & Seq

Genomic Coordinates Reverse (-)

3545855 .. 3548727

Gene Structure 2873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAGGCTTCCGTTGCAGCAAAGTCGCTCATAAAAATCGCAGCTGTTTCTGGTTCTCTTCGTCAAGCTTCCTACAACCGCGGCCTCATTCGCTCCGCGATTGAGCTAAGCAAGGCGATGGAGGGCGTCCAGATAGAGTACGTAGACATCGTGCCGTTGCCGCTGCTCAACACCGATGTGGAAAAAGACGGGAGTTTCCCACCTGCCGTCGAAGCCTTTCGTCAGAAGATTCGAGAAGCTGATAGCATCCTCTTTGCTTCTCCCGAGTACAATTACTCCATCGCCGCACCTCTAAAGAACGCAATTGACTGGGCATCCAGACCTCCAAATGTATGGGCTGATAAGGGTGCTGCAATTATAAGTGCCGGAGGAGGCTTTGGTGGTGGACGGTCCCAATACCATCTTCGCCAAGTTGGAGTTTTCCTTGACCTTCATTTCATTAACAAGCCTGAGTTTTTCTTGAATGCATTTCAGCCTCCAGCGAAATTCGACAGTGATGGCAACTTGATTGATGAAGAGTCCAAGGAGAGGTTAAAAAAAGTTCTGCTATCCCTGCAGGCATTTACTTTGAGACTCAAAGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0016645 GO:0016646 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0052873 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FMN_red

Protein Analysis

196

Amino Acids

21.34

Weight (kDa)

7.9

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_red	PF03358	11 - 156	5.3e-40	NADPH-dependent FMN reductase
Flavodoxin_2	PF02525	12 - 112	6.9e-09	Flavodoxin-like fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27890
fragaria_vesca	FvH4_7g03210 FvH4_7g03220
malus_domestica	MD02G1284500.v1.1 MD02G1284800.v1.1 MD07G1050400.v1.1
prunus_persica	Prupe.2G038100_v2.0.a1 Prupe.2G038100_v2.0.a1 Prupe.2G038200_v2.0.a1 Prupe.2G038400_v2.0.a1 Prupe.2G038400_v2.0.a1
pyrus_communis	pycom02g24230 pycom07g03630 pycom07g03640
rosa_chinensis	RchiOBHm_Chr1g0325161 RchiOBHm_Chr1g0325181 RchiOBHm_Chr1g0325221
rosa_laevigata	RLG00000030149 RLG00000030150 RLG00000030153
rosa_multiflora	Rmu_sc0001654.1_g000012 Rmu_sc0001654.1_g000020 Rmu_sc0007742.1_g000013 Rmu_sc0007742.1_g000019 Rmu_sc0007742.1_g000022
rosa_roxburghii	Rroxscaffold_4G00324850 Rroxscaffold_4G00324860 Rroxscaffold_4G00324870
rosa_rugosa	Rorug01G0050100 Rorug01G0050200
rosa_samantha	Rh1AG066000 Rh1AG066200 Rh1BG054100 Rh1BG054200 Rh1BG054300 Rh1CG067600 Rh1DG072400
rosa_wichuraiana	Rw0G010270 Rw1G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	359
AarI	CACCTGC	1 cut(s)	211
Acc36I	ACCTGC	1 cut(s)	211
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	2 cut(s)	81, 98
AciI	CCGC	5 cut(s)	79, 81, 96, 161, 285
AcsI	RAATTY	1 cut(s)	485
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	2 cut(s)	140, 269
AfiI	CCNNNNNNNGG	1 cut(s)	528
AgsI	TTSAA	1 cut(s)	463
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AleI	CACNNNNGTG	1 cut(s)	176
AluBI	AGCT	4 cut(s)	44, 68, 106, 239
AluI	AGCT	4 cut(s)	44, 68, 106, 239
Alw26I	GTCTC	1 cut(s)	565
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	4 cut(s)	17, 41, 163, 350
ApoI	RAATTY	1 cut(s)	485
Asp700I	GAANNNNTTC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	390
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	390
BbvI	GCAGC	4 cut(s)	29, 53, 150, 337
BccI	CCATC	4 cut(s)	112, 287, 408, 491
BceAI	ACGGC	2 cut(s)	139, 191
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BcoDI	GTCTC	1 cut(s)	565
BfmI	CTRYAG	1 cut(s)	554
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	7 cut(s)	18, 42, 82, 161, 164, 285, 351
BlpI	GCTNAGC	1 cut(s)	107
BlsI	GCNGC	7 cut(s)	19, 43, 83, 162, 165, 286, 352
Bme18I	GGWCC	1 cut(s)	390
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	390
BmiI	GGNNCC	1 cut(s)	392
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	2 cut(s)	255, 323
BmuI	ACTGGG	1 cut(s)	319
BpmI	CTGGAG	1 cut(s)	462
Bpu1102I	GCTNAGC	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	142
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	79, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	528
Bse1I	ACTGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	79, 522
BseGI	GGATG	2 cut(s)	246, 314
BseLI	CCNNNNNNNGG	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	384
BseXI	GCAGC	4 cut(s)	29, 53, 150, 337
Bsh1236I	CGCG	2 cut(s)	81, 98
BshFI	GGCC	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	528
BsmAI	GTCTC	1 cut(s)	565
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	84
BsoBI	CYCGRG	1 cut(s)	263
Bsp1720I	GCTNAGC	1 cut(s)	107
BspACI	CCGC	5 cut(s)	79, 81, 96, 161, 285
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	1 cut(s)	442
BspFNI	CGCG	2 cut(s)	81, 98
BspLI	GGNNCC	1 cut(s)	392
BspMAI	CTGCAG	1 cut(s)	558
BspMI	ACCTGC	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	79, 522
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	522
Bst4CI	ACNGT	2 cut(s)	390, 494
Bst6I	CTCTTC	2 cut(s)	63, 510
BstACI	GRCGYC	1 cut(s)	126
BstBAI	YACGTR	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	2 cut(s)	107, 450
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	2 cut(s)	246, 314
BstFNI	CGCG	2 cut(s)	81, 98
BstMAI	GTCTC	1 cut(s)	565
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 90, 160, 212, 553
BstSFI	CTRYAG	1 cut(s)	554
BstSNI	TACGTA	1 cut(s)	142
BstUI	CGCG	2 cut(s)	81, 98
BstV1I	GCAGC	4 cut(s)	29, 53, 150, 337
BstXI	CCANNNNNNTGG	1 cut(s)	333
BsuRI	GGCC	1 cut(s)	84
BtgI	CCRYGG	1 cut(s)	79
BtgZI	GCGATG	2 cut(s)	131, 265
BtsCI	GGATG	2 cut(s)	246, 314
BtsIMutI	CAGTG	1 cut(s)	499
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	558
Cfr13I	GGNCC	1 cut(s)	390
Cfr42I	CCGCGG	1 cut(s)	82
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	139, 268
CviQI	GTAC	2 cut(s)	139, 268
DdeI	CTNAG	2 cut(s)	107, 450
Eam1104I	CTCTTC	2 cut(s)	63, 510
EarI	CTCTTC	2 cut(s)	63, 510
Eco105I	TACGTA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	522
EcoT22I	ATGCAT	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	522
FaiI	YATR	3 cut(s)	32, 334, 359
FaqI	GGGAC	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	7 cut(s)	18, 42, 82, 161, 164, 285, 351
FokI	GGATG	2 cut(s)	233, 301
Fsp4HI	GCNGC	7 cut(s)	18, 42, 82, 161, 164, 285, 351
GluI	GCNGC	7 cut(s)	18, 42, 82, 161, 164, 285, 351
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	1 cut(s)	366
HgaI	GACGC	1 cut(s)	115
Hin1I	GRCGYC	1 cut(s)	126
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	3 cut(s)	229, 518, 573
HpaII	CCGG	1 cut(s)	366
Hpy166II	GTNNAC	2 cut(s)	145, 386
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	5 cut(s)	130, 233, 263, 318, 460
Hpy8I	GTNNAC	2 cut(s)	145, 386
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	2 cut(s)	390, 494
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	4 cut(s)	17, 353, 467, 556
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 90, 160, 212, 553
HpyF3I	CTNAG	2 cut(s)	107, 450
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	126
KspI	CCGCGG	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	4 cut(s)	29, 53, 150, 337
LweI	GCATC	2 cut(s)	255, 323
MaeII	ACGT	1 cut(s)	141
MboII	GAAGA	4 cut(s)	50, 238, 395, 527
MfeI	CAATTG	1 cut(s)	303
MluCI	AATT	5 cut(s)	271, 303, 354, 485, 583
MlyI	GAGTC	2 cut(s)	527, 567
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	9 cut(s)	95, 115, 260, 300, 333, 362, 365, 486, 522
Mph1103I	ATGCAT	1 cut(s)	469
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	2 cut(s)	441, 533
MslI	CAYNNNNRTG	1 cut(s)	176
MspA1I	CMGCKG	3 cut(s)	44, 81, 163
MspI	CCGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	303
Mva1269I	GAATGC	1 cut(s)	469
MvnI	CGCG	2 cut(s)	81, 98
MwoI	GCNNNNNNNGC	5 cut(s)	14, 90, 160, 212, 553
NlaIV	GGNNCC	1 cut(s)	392
NsiI	ATGCAT	1 cut(s)	469
OliI	CACNNNNGTG	1 cut(s)	176
PaqCI	CACCTGC	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PctI	GAATGC	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	7 cut(s)	19, 43, 83, 162, 165, 286, 352
PleI	GAGTC	2 cut(s)	526, 567
PpsI	GAGTC	2 cut(s)	526, 567
Ppu21I	YACGTR	1 cut(s)	142
PsiI	TTATAA	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	392
PspPI	GGNCC	1 cut(s)	390
PstI	CTGCAG	1 cut(s)	558
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	2 cut(s)	140, 269
RsaNI	GTAC	2 cut(s)	139, 268
RseI	CAYNNNNRTG	1 cut(s)	176
SacII	CCGCGG	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	441, 533
SatI	GCNGC	7 cut(s)	18, 42, 82, 161, 164, 285, 351
Sau96I	GGNCC	1 cut(s)	390
SbfI	CCTGCAGG	1 cut(s)	558
SchI	GAGTC	2 cut(s)	527, 567
SdaI	CCTGCAGG	1 cut(s)	558
SfaNI	GCATC	2 cut(s)	255, 323
SfcI	CTRYAG	1 cut(s)	554
Sfr303I	CCGCGG	1 cut(s)	82
SgrBI	CCGCGG	1 cut(s)	82
SinI	GGWCC	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	176
SnaBI	TACGTA	1 cut(s)	142
Sse8387I	CCTGCAGG	1 cut(s)	558
Sse9I	AATT	5 cut(s)	271, 303, 354, 485, 583
SsiI	CCGC	5 cut(s)	79, 81, 96, 161, 285
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	2 cut(s)	390, 494
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	3 cut(s)	210, 232, 489
TasI	AATT	5 cut(s)	271, 303, 354, 485, 583
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	3 cut(s)	84, 163, 287
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	441, 533
Tru9I	TTAA	2 cut(s)	441, 533
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	4 cut(s)	17, 41, 163, 350
TspDTI	ATGAA	3 cut(s)	422, 427, 528
TspRI	CASTG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	390
XapI	RAATTY	1 cut(s)	485
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	216
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.