Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002804

Physical Location & Seq

Genomic Coordinates Forward (+)

56518235 .. 56520820

Gene Structure 2586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030153

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCCGTCGAAGCTTTTCGTCAGAAGATTTGGGAAGCCGATAGCATCATCTTTGCTTCTCCCGAGTACAATTACTCCATCGCCGATTCTGCTATTTCCTAAAACTCTGACTATACCAGCACCTCTGAAGAATGCAATTGACTGGGCGTCCAGACCTCCAAATGTATGGGCTGATAAGGTTGCTGCAATTATAAGTGCCGGAGGAGACTTTGGTAGTGGACGAGCCCAATACCATCTTCGCCAAGTTGGAGTTTTCCTCGACCTTCATTTCATTAACAAGCCTGAGTTTTTCTTGAATGCATTCCAGCCTCCAGAAAAATTCGACAGTGATGGCAACTTGATTGATGAACAGTCCAAGGAGAGGACAGTTGGCTTCCACAATCCTATCATTTCAACTGCATATACTCTTCCATGTCCGGTCTCCAAGTACAACGTGAAGCAAGGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0016645 GO:0016646 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0052873 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FMN_red

Protein Analysis

150

Amino Acids

16.45

Weight (kDa)

9.52

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_red	PF03358	37 - 100	2.5e-15	NADPH-dependent FMN reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27890
fragaria_vesca	FvH4_7g03210 FvH4_7g03220
malus_domestica	MD02G1284500.v1.1 MD02G1284800.v1.1 MD07G1050400.v1.1
prunus_persica	Prupe.2G038100_v2.0.a1 Prupe.2G038100_v2.0.a1 Prupe.2G038200_v2.0.a1 Prupe.2G038400_v2.0.a1 Prupe.2G038400_v2.0.a1
pyrus_communis	pycom02g24230 pycom07g03630 pycom07g03640
rosa_chinensis	RchiOBHm_Chr1g0325161 RchiOBHm_Chr1g0325181 RchiOBHm_Chr1g0325221
rosa_laevigata	RLG00000030149 RLG00000030150 RLG00000030153
rosa_multiflora	Rmu_sc0001654.1_g000012 Rmu_sc0001654.1_g000020 Rmu_sc0007742.1_g000013 Rmu_sc0007742.1_g000019 Rmu_sc0007742.1_g000022
rosa_roxburghii	Rroxscaffold_4G00324850 Rroxscaffold_4G00324860 Rroxscaffold_4G00324870
rosa_rugosa	Rorug01G0050100 Rorug01G0050200
rosa_samantha	Rh1AG066000 Rh1AG066200 Rh1BG054100 Rh1BG054200 Rh1BG054300 Rh1CG067600 Rh1DG072400
rosa_wichuraiana	Rw0G010270 Rw1G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	146
AfaI	GTAC	2 cut(s)	67, 428
AfiI	CCNNNNNNNGG	1 cut(s)	360
AgsI	TTSAA	2 cut(s)	295, 393
AhdI	GACNNNNNGTC	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	2 cut(s)	219, 251
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
Alw26I	GTCTC	2 cut(s)	198, 424
Ama87I	CYCGRG	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	317
Asp700I	GAANNNNTTC	2 cut(s)	14, 299
AvaI	CYCGRG	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	3 cut(s)	85, 240, 323
BcoDI	GTCTC	2 cut(s)	198, 424
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
BmeRI	GACNNNNNGTC	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	61
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	53
BmuI	ACTGGG	1 cut(s)	151
BplI	GAGNNNNNCTC	2 cut(s)	240, 272
BpmI	CTGGAG	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	354
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse1I	ACTGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	2 cut(s)	198, 416
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmAI	GTCTC	2 cut(s)	198, 424
BsmI	GAATGC	3 cut(s)	136, 299, 301
Bso31I	GGTCTC	1 cut(s)	424
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	226
BspCNI	CTCAG	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	354
BssNI	GRCGYC	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	354
Bst4CI	ACNGT	3 cut(s)	326, 351, 367
Bst6I	CTCTTC	1 cut(s)	411
BstACI	GRCGYC	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	282
BstMAI	GTCTC	2 cut(s)	198, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 88
BstV1I	GCAGC	1 cut(s)	169
BstXI	CCANNNNNNTGG	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	331
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	66, 427
CviAII	CATG	1 cut(s)	411
CviJI	RGCY	7 cut(s)	13, 37, 170, 224, 280, 307, 372
CviKI_1	RGCY	7 cut(s)	13, 37, 170, 224, 280, 307, 372
CviQI	GTAC	2 cut(s)	66, 427
DdeI	CTNAG	1 cut(s)	282
DriI	GACNNNNNGTC	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	411
Eam1105I	GACNNNNNGTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	354
EcoT22I	ATGCAT	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	1 cut(s)	414
FaiI	YATR	6 cut(s)	113, 166, 191, 400, 402, 412
FatI	CATG	1 cut(s)	410
Fnu4HI	GCNGC	1 cut(s)	183
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	294
HapII	CCGG	2 cut(s)	198, 416
HgaI	GACGC	1 cut(s)	135
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	1 cut(s)	414
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	1 cut(s)	85
HpaII	CCGG	2 cut(s)	198, 416
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	4 cut(s)	23, 108, 126, 449
Hpy188III	TCNNGA	4 cut(s)	61, 150, 292, 311
Hpy8I	GTNNAC	1 cut(s)	218
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	3 cut(s)	326, 351, 367
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	4 cut(s)	134, 185, 299, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 88
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	432
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	1 cut(s)	414
LpnPI	CCDG	8 cut(s)	127, 129, 163, 211, 294, 317, 324, 429
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	53
MaeII	ACGT	1 cut(s)	432
MboII	GAAGA	4 cut(s)	36, 139, 227, 398
MfeI	CAATTG	1 cut(s)	135
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	4 cut(s)	69, 135, 186, 317
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	6 cut(s)	132, 165, 194, 266, 318, 354
Mph1103I	ATGCAT	1 cut(s)	301
MroXI	GAANNNNTTC	2 cut(s)	14, 299
MseI	TTAA	1 cut(s)	273
MspI	CCGG	2 cut(s)	198, 416
MunI	CAATTG	1 cut(s)	135
Mva1269I	GAATGC	3 cut(s)	136, 299, 301
MwoI	GCNNNNNNNGC	2 cut(s)	10, 88
NlaIII	CATG	1 cut(s)	414
NsiI	ATGCAT	1 cut(s)	301
PctI	GAATGC	3 cut(s)	136, 299, 301
PdmI	GAANNNNTTC	2 cut(s)	14, 299
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	184
PsiI	TTATAA	1 cut(s)	191
RsaI	GTAC	2 cut(s)	67, 428
RsaNI	GTAC	2 cut(s)	66, 427
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	7 cut(s)	15, 124, 157, 180, 264, 435, 445
SfaNI	GCATC	1 cut(s)	53
Sse9I	AATT	4 cut(s)	69, 135, 186, 317
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	3 cut(s)	326, 351, 367
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	3 cut(s)	8, 258, 321
TasI	AATT	4 cut(s)	69, 135, 186, 317
TatI	WGTACW	2 cut(s)	65, 426
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	331
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	254, 259, 360
TspRI	CASTG	1 cut(s)	331
XapI	RAATTY	1 cut(s)	317
XmnI	GAANNNNTTC	2 cut(s)	14, 299
Zsp2I	ATGCAT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.