Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002804

Physical Location & Seq

Genomic Coordinates Forward (+)

34094570 .. 34096383

Gene Structure 1814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1284500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAGGCGGCGGCAGTTGCAGCGACCAAACCGTTGATCAAAGTGGTGGCTATCTGTGGGTCCGTCCGTGAAGGTTCCTACAACCGCGGACTCATTCGTTCTGCGATTGAGATAAGCAAGTCGTCAATGAGCGGCGTGGAAATAGAGAACGTGGACATATCGAAGCTGCCATTGCTGAACACAGATCTGGAGGGAAAGGGAACTTTTCCACCTGTCGTCGAAGCATTTCGTCAGAAGATCCGAGAAGCTGATAGCATTCTCTTTGCCTCACCTGAATACAATTACTCCGTCTCGGCACCGCTAAAGAATGCACTTGACTGGGCATCAAGACCCCCAAATGTTTGGGCTGACAAGGCTGCTGCAATTATAAGCGCTTCAGGAGGCTCTGGCGGTTCACGATCCCAATACCATCTTCGCCAAATTGGAGTCTGCCTTGACCTTCATTTCATCAACAAGCCAGAGTTCTTCCTGAATGCATTTCAGCCCCCTGCAAAGTTCGACGAGAACAGCAACTTAATTGATGCACAGACCAAGGAGAATTTAAAGAAAGTTCTTCTTTCCTTGCAGGCTTTTACTTTGAGACTCCAAGGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0016645 GO:0016646 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0052873 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FMN_red

Protein Analysis

199

Amino Acids

21.56

Weight (kDa)

8.87

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_red	PF03358	13 - 159	2.5e-42	NADPH-dependent FMN reductase
Flavodoxin_2	PF02525	14 - 131	5.5e-10	Flavodoxin-like fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27890
fragaria_vesca	FvH4_7g03210 FvH4_7g03220
malus_domestica	MD02G1284500.v1.1 MD02G1284800.v1.1 MD07G1050400.v1.1
prunus_persica	Prupe.2G038100_v2.0.a1 Prupe.2G038100_v2.0.a1 Prupe.2G038200_v2.0.a1 Prupe.2G038400_v2.0.a1 Prupe.2G038400_v2.0.a1
pyrus_communis	pycom02g24230 pycom07g03630 pycom07g03640
rosa_chinensis	RchiOBHm_Chr1g0325161 RchiOBHm_Chr1g0325181 RchiOBHm_Chr1g0325221
rosa_laevigata	RLG00000030149 RLG00000030150 RLG00000030153
rosa_multiflora	Rmu_sc0001654.1_g000012 Rmu_sc0001654.1_g000020 Rmu_sc0007742.1_g000013 Rmu_sc0007742.1_g000019 Rmu_sc0007742.1_g000022
rosa_roxburghii	Rroxscaffold_4G00324850 Rroxscaffold_4G00324860 Rroxscaffold_4G00324870
rosa_rugosa	Rorug01G0050100 Rorug01G0050200
rosa_samantha	Rh1AG066000 Rh1AG066200 Rh1BG054100 Rh1BG054200 Rh1BG054300 Rh1CG067600 Rh1DG072400
rosa_wichuraiana	Rw0G010270 Rw1G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AccB1I	GGYRCC	1 cut(s)	295
AccBSI	CCGCTC	1 cut(s)	132
AccII	CGCG	1 cut(s)	87
AciI	CCGC	7 cut(s)	8, 11, 85, 87, 132, 299, 390
AclWI	GGATC	2 cut(s)	232, 393
AcsI	RAATTY	1 cut(s)	538
AcuI	CTGAAG	1 cut(s)	360
AfeI	AGCGCT	1 cut(s)	373
AjuI	GAANNNNNNNTTGG	2 cut(s)	396, 428
AluBI	AGCT	2 cut(s)	166, 248
AluI	AGCT	2 cut(s)	166, 248
Alw26I	GTCTC	2 cut(s)	295, 574
AlwI	GGATC	2 cut(s)	232, 393
Aor51HI	AGCGCT	1 cut(s)	373
ApeKI	GCWGC	4 cut(s)	20, 166, 356, 359
ApoI	RAATTY	1 cut(s)	538
Asp700I	GAANNNNTTC	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	295
BbvI	GCAGC	4 cut(s)	32, 153, 343, 346
BccI	CCATC	1 cut(s)	417
BclI	TGATCA	1 cut(s)	36
BcoDI	GTCTC	2 cut(s)	295, 574
BfoI	RGCGCY	1 cut(s)	375
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	7 cut(s)	9, 12, 21, 133, 167, 357, 360
BlsI	GCNGC	7 cut(s)	10, 13, 22, 134, 168, 358, 361
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	3 cut(s)	61, 76, 297
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	2 cut(s)	332, 511
BmuI	ACTGGG	1 cut(s)	328
BpmI	CTGGAG	1 cut(s)	209
BsaJI	CCNNGG	3 cut(s)	85, 531, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bse1I	ACTGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	170
BseDI	CCNNGG	3 cut(s)	85, 531, 586
BseMI	GCAATG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	323
BseXI	GCAGC	4 cut(s)	32, 153, 343, 346
Bsh1236I	CGCG	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	295
BsmAI	GTCTC	2 cut(s)	295, 574
BsmBI	CGTCTC	1 cut(s)	295
BsmI	GAATGC	3 cut(s)	255, 313, 478
Bsp143I	GATC	4 cut(s)	36, 184, 237, 398
BspACI	CCGC	7 cut(s)	8, 11, 85, 87, 132, 299, 390
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	3 cut(s)	61, 76, 297
BspPI	GGATC	2 cut(s)	232, 393
BspT107I	GGYRCC	1 cut(s)	295
BsrBI	CCGCTC	1 cut(s)	132
BsrDI	GCAATG	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	3 cut(s)	85, 531, 586
BssMI	GATC	4 cut(s)	36, 184, 237, 398
BssT1I	CCWWGG	2 cut(s)	531, 586
Bst4CI	ACNGT	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	567
BstDSI	CCRYGG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	4 cut(s)	39, 187, 240, 401
BstMAI	GTCTC	2 cut(s)	295, 574
BstMBI	GATC	4 cut(s)	36, 184, 237, 398
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 20, 172, 353
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	4 cut(s)	32, 153, 343, 346
BstX2I	RGATCY	2 cut(s)	184, 237
BstXI	CCANNNNNNTGG	1 cut(s)	342
BstYI	RGATCY	2 cut(s)	184, 237
BtgI	CCRYGG	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	567
CfoI	GCGC	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	60
Cfr42I	CCGCGG	1 cut(s)	88
CviJI	RGCY	9 cut(s)	50, 166, 248, 347, 356, 384, 457, 484, 569
CviKI_1	RGCY	9 cut(s)	50, 166, 248, 347, 356, 384, 457, 484, 569
DpnI	GATC	4 cut(s)	38, 186, 239, 400
DpnII	GATC	4 cut(s)	36, 184, 237, 398
DraI	TTTAAA	1 cut(s)	543
Eco130I	CCWWGG	2 cut(s)	531, 586
Eco47I	GGWCC	1 cut(s)	60
Eco47III	AGCGCT	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	360
EcoT14I	CCWWGG	2 cut(s)	531, 586
EcoT22I	ATGCAT	1 cut(s)	478
ErhI	CCWWGG	2 cut(s)	531, 586
Esp3I	CGTCTC	1 cut(s)	295
FaiI	YATR	2 cut(s)	158, 368
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	7 cut(s)	9, 12, 21, 133, 167, 357, 360
Fsp4HI	GCNGC	7 cut(s)	9, 12, 21, 133, 167, 357, 360
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	7 cut(s)	9, 12, 21, 133, 167, 357, 360
GsuI	CTGGAG	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	375
HhaI	GCGC	1 cut(s)	374
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HinfI	GANTC	3 cut(s)	90, 426, 582
HphI	GGTGA	1 cut(s)	261
Hpy166II	GTNNAC	2 cut(s)	154, 395
Hpy188I	TCNGA	2 cut(s)	234, 242
Hpy188III	TCNNGA	5 cut(s)	188, 327, 378, 396, 469
Hpy8I	GTNNAC	2 cut(s)	154, 395
Hpy99I	CGWCG	2 cut(s)	221, 503
HpyAV	CCTTC	2 cut(s)	65, 449
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	7 cut(s)	20, 311, 362, 476, 491, 524, 565
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 20, 172, 353
HpySE526I	ACGT	1 cut(s)	150
HspAI	GCGC	1 cut(s)	372
Ksp22I	TGATCA	1 cut(s)	36
KspI	CCGCGG	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	36, 184, 237, 398
Lsp1109I	GCAGC	4 cut(s)	32, 153, 343, 346
LweI	GCATC	2 cut(s)	332, 511
MaeII	ACGT	1 cut(s)	150
MalI	GATC	4 cut(s)	38, 186, 239, 400
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	4 cut(s)	36, 184, 237, 398
MboII	GAAGA	4 cut(s)	247, 404, 457, 545
MflI	RGATCY	2 cut(s)	184, 237
MluCI	AATT	5 cut(s)	280, 363, 420, 516, 538
MlyI	GAGTC	3 cut(s)	84, 435, 576
MnlI	CCTC	3 cut(s)	184, 277, 374
Mph1103I	ATGCAT	1 cut(s)	478
MroXI	GAANNNNTTC	1 cut(s)	225
MseI	TTAA	2 cut(s)	515, 542
MspA1I	CMGCKG	1 cut(s)	87
Mva1269I	GAATGC	3 cut(s)	255, 313, 478
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	4 cut(s)	17, 20, 172, 353
NdeII	GATC	4 cut(s)	36, 184, 237, 398
NlaIV	GGNNCC	3 cut(s)	61, 76, 297
NmeAIII	GCCGAG	1 cut(s)	272
NsiI	ATGCAT	1 cut(s)	478
PctI	GAATGC	3 cut(s)	255, 313, 478
PdmI	GAANNNNTTC	1 cut(s)	225
PkrI	GCNGC	7 cut(s)	10, 13, 22, 134, 168, 358, 361
PleI	GAGTC	3 cut(s)	84, 434, 576
PpsI	GAGTC	3 cut(s)	84, 434, 576
PsiI	TTATAA	1 cut(s)	368
PspN4I	GGNNCC	3 cut(s)	61, 76, 297
PspPI	GGNCC	1 cut(s)	60
PsuI	RGATCY	2 cut(s)	184, 237
SacII	CCGCGG	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	515, 542
SatI	GCNGC	7 cut(s)	9, 12, 21, 133, 167, 357, 360
Sau3AI	GATC	4 cut(s)	36, 184, 237, 398
Sau96I	GGNCC	1 cut(s)	60
SchI	GAGTC	3 cut(s)	84, 435, 576
SetI	ASST	7 cut(s)	76, 153, 168, 214, 250, 274, 441
SfaNI	GCATC	2 cut(s)	332, 511
Sfr303I	CCGCGG	1 cut(s)	88
SgrBI	CCGCGG	1 cut(s)	88
SinI	GGWCC	1 cut(s)	60
Sse9I	AATT	5 cut(s)	280, 363, 420, 516, 538
SsiI	CCGC	7 cut(s)	8, 11, 85, 87, 132, 299, 390
StyI	CCWWGG	2 cut(s)	531, 586
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	161, 219, 498
TasI	AATT	5 cut(s)	280, 363, 420, 516, 538
TauI	GCSGC	3 cut(s)	11, 14, 135
Tru1I	TTAA	2 cut(s)	515, 542
Tru9I	TTAA	2 cut(s)	515, 542
TseI	GCWGC	4 cut(s)	20, 166, 356, 359
TspDTI	ATGAA	2 cut(s)	431, 436
TspGWI	ACGGA	3 cut(s)	52, 56, 277
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	1 cut(s)	538
XmnI	GAANNNNTTC	1 cut(s)	225
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.