Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002804

Physical Location & Seq

Genomic Coordinates Reverse (-)

4128500 .. 4131777

Gene Structure 3278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G038400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCGGCGGCAGTTGGAGCGGAAGCAAAACCATTGATTAAAGTAGCGGCTATTTGTGGGTCCCTGCGTGAAGGTTCATATAACCGCGGTCTCATTCGTTCTGCGATTGAGATAAGCAAGTCGTCAATCCCCGGCGTGGAAATAGAGCACGTGGAGATCGCAGAGCTGCCACTGCTGAACACAGATCTGGAGGGCGAGGGGAGCTTTCCACCGGTCGTTGAAGCATTTCGTCAGAAGATTCTAGCAGCTGATAGCATTCTCTTTGCCTCCCCTGAATACAATTACTCTGTCTCAGCACCTCTAAAGAATGCACTTGACTGGGCATCAAGACCCCCAAATGTTTGGGGTGATAAGGCTGCCGCAATTGTAAGTGCTTCCGGAGGCTCTGGTGGTTCACGATCCCAATACCATCTTCGCCAAATTGGAGTGTTTCTTGACCTCCATTTCATCAACAAGCCAGAGTTTTTCTTAAATGCATTTGGGCCTCCTGCAAAGTTTGACAAAAATAGCAACTTGATTGATGCAAAGACCAGGGAGAATCTGAAGCAAGTTCTTCTGTCCTTGCAGGCTTTTACTTTGAGACTCCAAGGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0016645 GO:0016646 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0052873 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FMN_red

Protein Analysis

199

Amino Acids

21.38

Weight (kDa)

7.85

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27890
fragaria_vesca	FvH4_7g03210 FvH4_7g03220
malus_domestica	MD02G1284500.v1.1 MD02G1284800.v1.1 MD07G1050400.v1.1
prunus_persica	Prupe.2G038100_v2.0.a1 Prupe.2G038100_v2.0.a1 Prupe.2G038200_v2.0.a1 Prupe.2G038400_v2.0.a1 Prupe.2G038400_v2.0.a1
pyrus_communis	pycom02g24230 pycom07g03630 pycom07g03640
rosa_chinensis	RchiOBHm_Chr1g0325161 RchiOBHm_Chr1g0325181 RchiOBHm_Chr1g0325221
rosa_laevigata	RLG00000030149 RLG00000030150 RLG00000030153
rosa_multiflora	Rmu_sc0001654.1_g000012 Rmu_sc0001654.1_g000020 Rmu_sc0007742.1_g000013 Rmu_sc0007742.1_g000019 Rmu_sc0007742.1_g000022
rosa_roxburghii	Rroxscaffold_4G00324850 Rroxscaffold_4G00324860 Rroxscaffold_4G00324870
rosa_rugosa	Rorug01G0050100 Rorug01G0050200
rosa_samantha	Rh1AG066000 Rh1AG066200 Rh1BG054100 Rh1BG054200 Rh1BG054300 Rh1CG067600 Rh1DG072400
rosa_wichuraiana	Rw0G010270 Rw1G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	20
AccII	CGCG	1 cut(s)	87
AccIII	TCCGGA	1 cut(s)	377
AciI	CCGC	7 cut(s)	5, 8, 20, 47, 85, 87, 360
AclWI	GGATC	1 cut(s)	393
AcuI	CTGAAG	1 cut(s)	563
AcvI	CACGTG	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgeI	ACCGGT	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	530
AjuI	GAANNNNNNNTTGG	2 cut(s)	396, 428
AluBI	AGCT	3 cut(s)	166, 204, 248
AluI	AGCT	3 cut(s)	166, 204, 248
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	3 cut(s)	95, 295, 574
AlwI	GGATC	1 cut(s)	393
Aor13HI	TCCGGA	1 cut(s)	377
AoxI	GGCC	1 cut(s)	482
ApeKI	GCWGC	3 cut(s)	166, 245, 356
AsiGI	ACCGGT	1 cut(s)	211
Asp700I	GAANNNNTTC	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	60, 482
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	60
BbrPI	CACGTG	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	153, 257, 343
BccI	CCATC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	3 cut(s)	95, 295, 574
BfaI	CTAG	1 cut(s)	242
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	7 cut(s)	6, 9, 48, 167, 246, 357, 360
BlsI	GCNGC	7 cut(s)	7, 10, 49, 168, 247, 358, 361
Bme1390I	CCNGG	2 cut(s)	132, 532
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	60, 482
BmiI	GGNNCC	2 cut(s)	61, 62
BmrFI	CCNGG	2 cut(s)	132, 532
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	2 cut(s)	332, 511
BmuI	ACTGGG	1 cut(s)	328
BpmI	CTGGAG	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	151
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	4 cut(s)	85, 130, 531, 586
BsaWI	WCCGGW	2 cut(s)	211, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	323
BseAI	TCCGGA	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	532
BseDI	CCNNGG	4 cut(s)	85, 130, 531, 586
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	323
BseXI	GCAGC	3 cut(s)	153, 257, 343
Bsh1236I	CGCG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	484
BshTI	ACCGGT	1 cut(s)	211
BsiEI	CGRYCG	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	3 cut(s)	132, 212, 378
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	3 cut(s)	95, 295, 574
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	2 cut(s)	255, 313
BsnI	GGCC	1 cut(s)	484
Bso31I	GGTCTC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp13I	TCCGGA	1 cut(s)	377
Bsp143I	GATC	3 cut(s)	156, 184, 398
BspACI	CCGC	7 cut(s)	5, 8, 20, 47, 85, 87, 360
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	1 cut(s)	305
BspEI	TCCGGA	1 cut(s)	377
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	61, 62
BspPI	GGATC	1 cut(s)	393
BspTNI	GGTCTC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	20
BsrFI	RCCGGY	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	211
BssECI	CCNNGG	4 cut(s)	85, 130, 531, 586
BssMI	GATC	3 cut(s)	156, 184, 398
BssT1I	CCWWGG	1 cut(s)	586
Bst2UI	CCWGG	1 cut(s)	532
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	1 cut(s)	292
BstDSI	CCRYGG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	3 cut(s)	159, 187, 401
BstMAI	GTCTC	3 cut(s)	95, 295, 574
BstMBI	GATC	3 cut(s)	156, 184, 398
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 172, 201
BstNI	CCWGG	1 cut(s)	532
BstSCI	CCNGG	2 cut(s)	130, 530
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	3 cut(s)	153, 257, 343
BstX2I	RGATCY	1 cut(s)	184
BstXI	CCANNNNNNTGG	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	484
BtgI	CCRYGG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	567
Cfr10I	RCCGGY	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	60, 482
Cfr42I	CCGCGG	1 cut(s)	88
CspAI	ACCGGT	1 cut(s)	211
CviJI	RGCY	9 cut(s)	50, 166, 204, 248, 356, 384, 457, 484, 569
CviKI_1	RGCY	9 cut(s)	50, 166, 204, 248, 356, 384, 457, 484, 569
DdeI	CTNAG	1 cut(s)	292
DpnI	GATC	3 cut(s)	158, 186, 400
DpnII	GATC	3 cut(s)	156, 184, 398
Eco130I	CCWWGG	1 cut(s)	586
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	563
Eco72I	CACGTG	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	530
EcoT14I	CCWWGG	1 cut(s)	586
EcoT22I	ATGCAT	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	586
FaiI	YATR	2 cut(s)	79, 81
FaqI	GGGAC	1 cut(s)	46
Fnu4HI	GCNGC	7 cut(s)	6, 9, 48, 167, 246, 357, 360
Fsp4HI	GCNGC	7 cut(s)	6, 9, 48, 167, 246, 357, 360
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	7 cut(s)	6, 9, 48, 167, 246, 357, 360
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	484
HapII	CCGG	3 cut(s)	132, 212, 378
HinfI	GANTC	3 cut(s)	238, 538, 582
HpaII	CCGG	3 cut(s)	132, 212, 378
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	2 cut(s)	234, 543
Hpy188III	TCNNGA	5 cut(s)	188, 327, 378, 396, 434
Hpy8I	GTNNAC	1 cut(s)	395
HpyAV	CCTTC	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	5 cut(s)	311, 476, 491, 524, 565
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 172, 201
HpyF3I	CTNAG	1 cut(s)	292
HpySE526I	ACGT	1 cut(s)	150
KflI	GGGWCCC	1 cut(s)	60
Kpn2I	TCCGGA	1 cut(s)	377
KspI	CCGCGG	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	156, 184, 398
LmnI	GCTCC	2 cut(s)	17, 201
Lsp1109I	GCAGC	3 cut(s)	153, 257, 343
LweI	GCATC	2 cut(s)	332, 511
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	1 cut(s)	150
MalI	GATC	3 cut(s)	158, 186, 400
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	3 cut(s)	156, 184, 398
MboII	GAAGA	3 cut(s)	247, 404, 545
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	3 cut(s)	280, 363, 420
MlyI	GAGTC	1 cut(s)	576
MnlI	CCTC	7 cut(s)	184, 190, 277, 309, 374, 449, 495
Mph1103I	ATGCAT	1 cut(s)	478
MroI	TCCGGA	1 cut(s)	377
MroXI	GAANNNNTTC	1 cut(s)	225
MseI	TTAA	2 cut(s)	39, 470
MspA1I	CMGCKG	2 cut(s)	87, 248
MspI	CCGG	3 cut(s)	132, 212, 378
MspR9I	CCNGG	2 cut(s)	132, 532
MunI	CAATTG	1 cut(s)	363
Mva1269I	GAATGC	2 cut(s)	255, 313
MvaI	CCWGG	1 cut(s)	532
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	3 cut(s)	17, 172, 201
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	3 cut(s)	156, 184, 398
NlaIV	GGNNCC	2 cut(s)	61, 62
NsiI	ATGCAT	1 cut(s)	478
PctI	GAATGC	2 cut(s)	255, 313
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	238, 538
PinAI	ACCGGT	1 cut(s)	211
PkrI	GCNGC	7 cut(s)	7, 10, 49, 168, 247, 358, 361
PleI	GAGTC	1 cut(s)	576
PmaCI	CACGTG	1 cut(s)	151
PmlI	CACGTG	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	576
Ppu21I	YACGTR	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	530
PspCI	CACGTG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	530
PspN4I	GGNNCC	2 cut(s)	61, 62
PspPI	GGNCC	2 cut(s)	60, 482
PspPPI	RGGWCCY	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	248
SacII	CCGCGG	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	39, 470
SatI	GCNGC	7 cut(s)	6, 9, 48, 167, 246, 357, 360
Sau3AI	GATC	3 cut(s)	156, 184, 398
Sau96I	GGNCC	2 cut(s)	60, 482
SchI	GAGTC	1 cut(s)	576
ScrFI	CCNGG	2 cut(s)	132, 532
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	7 cut(s)	76, 153, 168, 206, 250, 301, 441
SfaNI	GCATC	2 cut(s)	332, 511
Sfr303I	CCGCGG	1 cut(s)	88
SgrBI	CCGCGG	1 cut(s)	88
SinI	GGWCC	1 cut(s)	60
Sse9I	AATT	3 cut(s)	280, 363, 420
SsiI	CCGC	7 cut(s)	5, 8, 20, 47, 85, 87, 360
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	2 cut(s)	130, 530
StyI	CCWWGG	1 cut(s)	586
TaiI	ACGT	1 cut(s)	153
TasI	AATT	3 cut(s)	280, 363, 420
TauI	GCSGC	4 cut(s)	8, 11, 50, 362
TfiI	GAWTC	2 cut(s)	238, 538
Tru1I	TTAA	2 cut(s)	39, 470
Tru9I	TTAA	2 cut(s)	39, 470
TscAI	CASTG	1 cut(s)	177
TseI	GCWGC	3 cut(s)	166, 245, 356
TspDTI	ATGAA	2 cut(s)	66, 436
TspRI	CASTG	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	1 cut(s)	242
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.