Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002804

Physical Location & Seq

Genomic Coordinates Reverse (-)

13154960 .. 13157369

Gene Structure 2410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG072400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCTGAACACGGATCTGGAGGTCGGAGGGAGATTTCCACCGGTGGTTGAGGCGTTTCGTCAGAAGATTTTAGAGGCTGATAGCATTCTCTTTGCTTCTCCCGAGTACAATTACTCTGTCTCTGCACCTCTGAAAAATGCTATGGACTGGGCATCTAGACCCCCAAATGTGTGGGCTGATAAAGCTGCTGCGATTATAAGTGCTTCAGGAGGTTCGGGTGGTTCAAGATCTCAATACCATCTTCGCCAAATCGGAGTTTTTCTCGATCTTCATTTCATCAACAAGCCTGAACTTTTCATAAATGCACACCATCCTCCGGGAAAATTTGACGAAAATGGCGACTTGATTGATGCACAGACCAAGGAGAGTCTAAAACAAGTTCTACTATCATTGCAGACTTTTACTTTGAGACTCCAAGGAAGATCAAAGTTAAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0016645 GO:0016646 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0052873 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FMN_red

Protein Analysis

146

Amino Acids

16.18

Weight (kDa)

8.02

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_red	PF03358	3 - 102	8.6e-29	NADPH-dependent FMN reductase
Flavodoxin_2	PF02525	14 - 75	7.9e-07	Flavodoxin-like fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27890
fragaria_vesca	FvH4_7g03210 FvH4_7g03220
malus_domestica	MD02G1284500.v1.1 MD02G1284800.v1.1 MD07G1050400.v1.1
prunus_persica	Prupe.2G038100_v2.0.a1 Prupe.2G038100_v2.0.a1 Prupe.2G038200_v2.0.a1 Prupe.2G038400_v2.0.a1 Prupe.2G038400_v2.0.a1
pyrus_communis	pycom02g24230 pycom07g03630 pycom07g03640
rosa_chinensis	RchiOBHm_Chr1g0325161 RchiOBHm_Chr1g0325181 RchiOBHm_Chr1g0325221
rosa_laevigata	RLG00000030149 RLG00000030150 RLG00000030153
rosa_multiflora	Rmu_sc0001654.1_g000012 Rmu_sc0001654.1_g000020 Rmu_sc0007742.1_g000013 Rmu_sc0007742.1_g000019 Rmu_sc0007742.1_g000022
rosa_roxburghii	Rroxscaffold_4G00324850 Rroxscaffold_4G00324860 Rroxscaffold_4G00324870
rosa_rugosa	Rorug01G0050100 Rorug01G0050200
rosa_samantha	Rh1AG066000 Rh1AG066200 Rh1BG054100 Rh1BG054200 Rh1BG054300 Rh1CG067600 Rh1DG072400
rosa_wichuraiana	Rw0G010270 Rw1G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	197
AclWI	GGATC	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgeI	ACCGGT	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	225
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
Alw26I	GTCTC	2 cut(s)	124, 403
AlwI	GGATC	1 cut(s)	21
Ama87I	CYCGRG	1 cut(s)	101
ApeKI	GCWGC	2 cut(s)	185, 188
ApoI	RAATTY	1 cut(s)	323
ArsI	GACNNNNNNTTYG	2 cut(s)	388, 420
AsiGI	ACCGGT	1 cut(s)	40
AsuC2I	CCSGG	1 cut(s)	318
AvaI	CYCGRG	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	172, 175
BccI	CCATC	2 cut(s)	246, 318
BcnI	CCSGG	1 cut(s)	318
BcoDI	GTCTC	2 cut(s)	124, 403
BfaI	CTAG	1 cut(s)	156
BglII	AGATCT	1 cut(s)	227
BisI	GCNGC	2 cut(s)	186, 189
BlsI	GCNGC	2 cut(s)	187, 190
Bme1390I	CCNGG	1 cut(s)	318
BmeT110I	CYCGRG	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	318
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	2 cut(s)	161, 340
BmuI	ACTGGG	1 cut(s)	157
BplI	GAGNNNNNCTC	2 cut(s)	246, 278
BpmI	CTGGAG	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	360, 415
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse118I	RCCGGY	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	389
BseDI	CCNNGG	2 cut(s)	360, 415
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMI	GCAATG	1 cut(s)	389
BseNI	ACTGG	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	172, 175
BsgI	GTGCAG	1 cut(s)	108
BshTI	ACCGGT	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	41, 317
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	2 cut(s)	124, 403
BsmI	GAATGC	1 cut(s)	84
BsoBI	CYCGRG	1 cut(s)	101
Bsp143I	GATC	4 cut(s)	13, 227, 265, 422
BspPI	GGATC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	389
BsrFI	RCCGGY	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	360, 415
BssMI	GATC	4 cut(s)	13, 227, 265, 422
BssT1I	CCWWGG	2 cut(s)	360, 415
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	4 cut(s)	16, 230, 268, 425
BstMAI	GTCTC	2 cut(s)	124, 403
BstMBI	GATC	4 cut(s)	13, 227, 265, 422
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	316
BstV1I	GCAGC	2 cut(s)	172, 175
BstX2I	RGATCY	2 cut(s)	13, 227
BstXI	CCANNNNNNTGG	1 cut(s)	171
BstYI	RGATCY	2 cut(s)	13, 227
BtsCI	GGATG	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	106
CspAI	ACCGGT	1 cut(s)	40
CviJI	RGCY	4 cut(s)	77, 176, 185, 286
CviKI_1	RGCY	4 cut(s)	77, 176, 185, 286
CviQI	GTAC	1 cut(s)	106
DpnI	GATC	4 cut(s)	15, 229, 267, 424
DpnII	GATC	4 cut(s)	13, 227, 265, 422
Eco130I	CCWWGG	2 cut(s)	360, 415
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	101
EcoT14I	CCWWGG	2 cut(s)	360, 415
ErhI	CCWWGG	2 cut(s)	360, 415
FaiI	YATR	3 cut(s)	143, 197, 299
Fnu4HI	GCNGC	2 cut(s)	186, 189
FokI	GGATG	1 cut(s)	297
Fsp4HI	GCNGC	2 cut(s)	186, 189
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	2 cut(s)	186, 189
GsuI	CTGGAG	1 cut(s)	38
HapII	CCGG	2 cut(s)	41, 317
HinfI	GANTC	2 cut(s)	367, 411
HpaII	CCGG	2 cut(s)	41, 317
Hpy188I	TCNGA	4 cut(s)	26, 63, 132, 254
Hpy188III	TCNNGA	6 cut(s)	17, 101, 156, 207, 225, 263
HpyCH4V	TGCA	4 cut(s)	125, 305, 353, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
Kzo9I	GATC	4 cut(s)	13, 227, 265, 422
LpnPI	CCDG	6 cut(s)	2, 54, 133, 192, 300, 330
Lsp1109I	GCAGC	2 cut(s)	172, 175
LweI	GCATC	2 cut(s)	161, 340
MaeI	CTAG	1 cut(s)	156
MalI	GATC	4 cut(s)	15, 229, 267, 424
MboI	GATC	4 cut(s)	13, 227, 265, 422
MboII	GAAGA	4 cut(s)	76, 233, 260, 432
MflI	RGATCY	2 cut(s)	13, 227
MluCI	AATT	3 cut(s)	109, 323, 436
MlyI	GAGTC	2 cut(s)	376, 405
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	7 cut(s)	13, 20, 43, 67, 138, 203, 324
MseI	TTAA	2 cut(s)	431, 439
MspI	CCGG	2 cut(s)	41, 317
MspR9I	CCNGG	1 cut(s)	318
Mva1269I	GAATGC	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	182
NciI	CCSGG	1 cut(s)	318
NdeII	GATC	4 cut(s)	13, 227, 265, 422
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PctI	GAATGC	1 cut(s)	84
PfoI	TCCNGGA	1 cut(s)	316
PinAI	ACCGGT	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	187, 190
PleI	GAGTC	2 cut(s)	375, 405
PpsI	GAGTC	2 cut(s)	375, 405
PsiI	TTATAA	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	13, 227
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	431, 439
SatI	GCNGC	2 cut(s)	186, 189
Sau3AI	GATC	4 cut(s)	13, 227, 265, 422
SchI	GAGTC	2 cut(s)	376, 405
ScrFI	CCNGG	1 cut(s)	318
SetI	ASST	4 cut(s)	24, 130, 187, 214
SfaNI	GCATC	2 cut(s)	161, 340
SgrAI	CRCCGGYG	1 cut(s)	40
Sse9I	AATT	3 cut(s)	109, 323, 436
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	2 cut(s)	360, 415
TaqI	TCGA	1 cut(s)	264
TasI	AATT	3 cut(s)	109, 323, 436
TatI	WGTACW	1 cut(s)	105
Tru1I	TTAA	2 cut(s)	431, 439
Tru9I	TTAA	2 cut(s)	431, 439
TseI	GCWGC	2 cut(s)	185, 188
TspDTI	ATGAA	3 cut(s)	260, 265, 286
TspGWI	ACGGA	1 cut(s)	26
XapI	RAATTY	1 cut(s)	323
XbaI	TCTAGA	1 cut(s)	155
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.