Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002804

Physical Location & Seq

Genomic Coordinates Forward (+)

56537962 .. 56540452

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00324870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAGGCTTCAATTGCAGCAAAATCGCTCGTAAAAATCGCAGCAGTTTCTGGTTCTCTTCGTCAAGGTTCCTACAACCGCGGCCTCATTCGCTCTGCGATTGAGATAAGCAAGGCCATCGAGGGCGTCCAAATAGAGTACATAGACATCGCACCGTTGCCGCTGCTCAACACCGATTTGGAAGGCGAGGAGAGTTTTCCACCTGCCGTCGAAGCTTTTCGTCAGAAGATTCAGGAAGCCGATAGCATCCTCTTTGCTTCTCCCGAGTACAATTACTCCATCGCCGCACCTCTGAAGAATGCAATTGACTGGGCGTCCAGACCTCCAAATGTATGGGCTGATAAGGCTGCTGCAATTGTAAGTGCGGGAGGAGACTTTGGTGGTGGACGATCCCAATACCATCTTCGCCAAGTTGGAGTTTTCCTTGACCTTCATTTCATTAACAAACCTGAGTTTTTCTTGAATGCATTCCAGCCTCCAGAAAAATTCAACAGTGATGGCAACTTGATTGATGAACAGTCCAAGGAGAGGTTAAAAAAGGTTCTGCTGTCCCTGCAGGCATTTACTTTGAGACTCAAAGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0016645 GO:0016646 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0052873 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FMN_red

Protein Analysis

195

Amino Acids

21.42

Weight (kDa)

6.16

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_red	PF03358	11 - 156	4.5e-41	NADPH-dependent FMN reductase
Flavodoxin_2	PF02525	12 - 112	1.8e-09	Flavodoxin-like fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27890
fragaria_vesca	FvH4_7g03210 FvH4_7g03220
malus_domestica	MD02G1284500.v1.1 MD02G1284800.v1.1 MD07G1050400.v1.1
prunus_persica	Prupe.2G038100_v2.0.a1 Prupe.2G038100_v2.0.a1 Prupe.2G038200_v2.0.a1 Prupe.2G038400_v2.0.a1 Prupe.2G038400_v2.0.a1
pyrus_communis	pycom02g24230 pycom07g03630 pycom07g03640
rosa_chinensis	RchiOBHm_Chr1g0325161 RchiOBHm_Chr1g0325181 RchiOBHm_Chr1g0325221
rosa_laevigata	RLG00000030149 RLG00000030150 RLG00000030153
rosa_multiflora	Rmu_sc0001654.1_g000012 Rmu_sc0001654.1_g000020 Rmu_sc0007742.1_g000013 Rmu_sc0007742.1_g000019 Rmu_sc0007742.1_g000022
rosa_roxburghii	Rroxscaffold_4G00324850 Rroxscaffold_4G00324860 Rroxscaffold_4G00324870
rosa_rugosa	Rorug01G0050100 Rorug01G0050200
rosa_samantha	Rh1AG066000 Rh1AG066200 Rh1BG054100 Rh1BG054200 Rh1BG054300 Rh1CG067600 Rh1DG072400
rosa_wichuraiana	Rw0G010270 Rw1G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	211
Acc36I	ACCTGC	1 cut(s)	211
AccII	CGCG	1 cut(s)	81
AciI	CCGC	5 cut(s)	79, 81, 161, 285, 365
AclWI	GGATC	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	485
AcuI	CTGAAG	1 cut(s)	314
AcyI	GRCGYC	2 cut(s)	126, 314
AfaI	GTAC	2 cut(s)	140, 269
AfiI	CCNNNNNNNGG	1 cut(s)	528
AgsI	TTSAA	3 cut(s)	12, 463, 490
AhdI	GACNNNNNGTC	1 cut(s)	313
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw26I	GTCTC	2 cut(s)	366, 565
AlwI	GGATC	1 cut(s)	384
AlwNI	CAGNNNCTG	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	2 cut(s)	82, 114
ApeKI	GCWGC	5 cut(s)	17, 41, 163, 347, 350
ApoI	RAATTY	1 cut(s)	485
Asp700I	GAANNNNTTC	2 cut(s)	216, 467
AvaI	CYCGRG	1 cut(s)	263
BbvI	GCAGC	5 cut(s)	29, 53, 150, 334, 337
BccI	CCATC	4 cut(s)	125, 287, 408, 491
BceAI	ACGGC	1 cut(s)	191
BcgI	CGANNNNNNTGC	4 cut(s)	6, 40, 100, 134
BcoDI	GTCTC	2 cut(s)	366, 565
BfmI	CTRYAG	1 cut(s)	554
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	8 cut(s)	18, 42, 82, 161, 164, 285, 348, 351
BlsI	GCNGC	8 cut(s)	19, 43, 83, 162, 165, 286, 349, 352
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmeT110I	CYCGRG	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	70
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	1 cut(s)	255
BmuI	ACTGGG	1 cut(s)	319
BpmI	CTGGAG	1 cut(s)	462
BsaHI	GRCGYC	2 cut(s)	126, 314
BsaJI	CCNNGG	2 cut(s)	79, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	528
Bse1I	ACTGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	79, 522
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	2 cut(s)	203, 384
BseXI	GCAGC	5 cut(s)	29, 53, 150, 334, 337
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	84, 116
BsiHKCI	CYCGRG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	1 cut(s)	528
BsmAI	GTCTC	2 cut(s)	366, 565
BsmFI	GGGAC	1 cut(s)	535
BsmI	GAATGC	3 cut(s)	304, 467, 469
BsnI	GGCC	2 cut(s)	84, 116
BsoBI	CYCGRG	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	389
BspACI	CCGC	5 cut(s)	79, 81, 161, 285, 365
BspANI	GGCC	2 cut(s)	84, 116
BspCNI	CTCAG	1 cut(s)	442
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	70
BspMAI	CTGCAG	1 cut(s)	558
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	79, 522
BssMI	GATC	1 cut(s)	389
BssNI	GRCGYC	2 cut(s)	126, 314
BssT1I	CCWWGG	1 cut(s)	522
Bst4CI	ACNGT	3 cut(s)	156, 494, 519
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	2 cut(s)	126, 314
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	1 cut(s)	450
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	246
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	1 cut(s)	392
BstMAI	GTCTC	2 cut(s)	366, 565
BstMBI	GATC	1 cut(s)	389
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 90, 212, 344, 553
BstSFI	CTRYAG	1 cut(s)	554
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	5 cut(s)	29, 53, 150, 334, 337
BstXI	CCANNNNNNTGG	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	84, 116
BtgI	CCRYGG	1 cut(s)	79
BtgZI	GCGATG	2 cut(s)	133, 265
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	499
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	558
CaiI	CAGNNNCTG	1 cut(s)	50
Cfr42I	CCGCGG	1 cut(s)	82
CseI	GACGC	2 cut(s)	115, 303
Csp6I	GTAC	2 cut(s)	139, 268
CviJI	RGCY	8 cut(s)	8, 84, 116, 215, 239, 338, 347, 475
CviKI_1	RGCY	8 cut(s)	8, 84, 116, 215, 239, 338, 347, 475
CviQI	GTAC	2 cut(s)	139, 268
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	1 cut(s)	391
DpnII	GATC	1 cut(s)	389
DriI	GACNNNNNGTC	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	63
Eam1105I	GACNNNNNGTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	522
EcoT22I	ATGCAT	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	522
FaiI	YATR	2 cut(s)	143, 334
FaqI	GGGAC	1 cut(s)	535
FauI	CCCGC	1 cut(s)	358
Fnu4HI	GCNGC	8 cut(s)	18, 42, 82, 161, 164, 285, 348, 351
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	8 cut(s)	18, 42, 82, 161, 164, 285, 348, 351
GluI	GCNGC	8 cut(s)	18, 42, 82, 161, 164, 285, 348, 351
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	84, 116
HgaI	GACGC	2 cut(s)	115, 303
Hin1I	GRCGYC	2 cut(s)	126, 314
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	2 cut(s)	229, 573
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	2 cut(s)	225, 294
Hpy188III	TCNNGA	5 cut(s)	233, 263, 318, 460, 479
Hpy8I	GTNNAC	1 cut(s)	386
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	2 cut(s)	176, 440
HpyCH4III	ACNGT	3 cut(s)	156, 494, 519
HpyCH4V	TGCA	5 cut(s)	17, 302, 353, 467, 556
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 90, 212, 344, 553
HpyF3I	CTNAG	1 cut(s)	450
Hsp92I	GRCGYC	2 cut(s)	126, 314
KspI	CCGCGG	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	389
Lsp1109I	GCAGC	5 cut(s)	29, 53, 150, 334, 337
LweI	GCATC	1 cut(s)	255
MalI	GATC	1 cut(s)	391
MboI	GATC	1 cut(s)	389
MboII	GAAGA	4 cut(s)	50, 238, 307, 395
MfeI	CAATTG	3 cut(s)	12, 303, 354
MluCI	AATT	5 cut(s)	12, 271, 303, 354, 485
MlyI	GAGTC	1 cut(s)	567
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	9 cut(s)	95, 115, 181, 260, 300, 333, 362, 486, 522
Mph1103I	ATGCAT	1 cut(s)	469
MroXI	GAANNNNTTC	2 cut(s)	216, 467
MseI	TTAA	2 cut(s)	441, 533
MspA1I	CMGCKG	2 cut(s)	81, 163
MunI	CAATTG	3 cut(s)	12, 303, 354
Mva1269I	GAATGC	3 cut(s)	304, 467, 469
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	5 cut(s)	14, 90, 212, 344, 553
NdeII	GATC	1 cut(s)	389
NlaIV	GGNNCC	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	469
PaqCI	CACCTGC	1 cut(s)	211
PctI	GAATGC	3 cut(s)	304, 467, 469
PdmI	GAANNNNTTC	2 cut(s)	216, 467
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	8 cut(s)	19, 43, 83, 162, 165, 286, 349, 352
PleI	GAGTC	1 cut(s)	567
PpsI	GAGTC	1 cut(s)	567
PspN4I	GGNNCC	1 cut(s)	70
PstI	CTGCAG	1 cut(s)	558
PstNI	CAGNNNCTG	1 cut(s)	50
RsaI	GTAC	2 cut(s)	140, 269
RsaNI	GTAC	2 cut(s)	139, 268
SacII	CCGCGG	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	441, 533
SatI	GCNGC	8 cut(s)	18, 42, 82, 161, 164, 285, 348, 351
Sau3AI	GATC	1 cut(s)	389
SbfI	CCTGCAGG	1 cut(s)	558
SchI	GAGTC	1 cut(s)	567
SdaI	CCTGCAGG	1 cut(s)	558
SetI	ASST	9 cut(s)	70, 205, 217, 292, 325, 432, 451, 533, 543
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	1 cut(s)	554
Sfr303I	CCGCGG	1 cut(s)	82
SgrBI	CCGCGG	1 cut(s)	82
Sse8387I	CCTGCAGG	1 cut(s)	558
Sse9I	AATT	5 cut(s)	12, 271, 303, 354, 485
SsiI	CCGC	5 cut(s)	79, 81, 161, 285, 365
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	3 cut(s)	156, 494, 519
TaqI	TCGA	2 cut(s)	120, 210
TasI	AATT	5 cut(s)	12, 271, 303, 354, 485
TatI	WGTACW	2 cut(s)	138, 267
TauI	GCSGC	3 cut(s)	84, 163, 287
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	441, 533
Tru9I	TTAA	2 cut(s)	441, 533
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	5 cut(s)	17, 41, 163, 347, 350
TspDTI	ATGAA	3 cut(s)	422, 427, 528
TspRI	CASTG	1 cut(s)	499
XapI	RAATTY	1 cut(s)	485
XmnI	GAANNNNTTC	2 cut(s)	216, 467
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.