Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002804

Physical Location & Seq

Genomic Coordinates Forward (+)

22371517 .. 22372694

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g24230.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAGGCGGCAGCAGTTGCAGCGACCAAACCGTTGATAAAAGTGGTGGCTATCTGTGGGTCCGTCCGTGAAGGTTCCTACAACCGCGGCCTCATTCGTTCTGCGATTGAGATAAGCAAGTCGTCAATGAGCGGCGTGGAAATAGAGAACGTGGACATATCGAAGCTGCCACTGCTGAACACAGATCTGGAAGGAGAGGGAACTTTTCCACCTGTCGTCGAGGCATTTCGTCGGAAGATCCGAGAAGCTGACAGCATTCTCTTTGCCTCACCTGAATACAATTACTCCGTCTCAGCACCACTAAAGAATGCACTTGACTGGGCATCAAGACCCCCAAATGTTTGGGCTGACAAGGCTGCTGCAATTATAAGCGCTTCAGGAGGCTCCGGCGGTTCACGATCCCAATACCATCTTCGCCAAATCGGAGTCGTCCTTGACCTTCATTTCATCAACAAGCCAGAGTTCTTCCTGAATGCGTTTCAGCCTCCTGCAAAGTTCGATGAGAACAGCAACTTAATTGATGCACAGACCAAGGAGAAATTAAAGAAAGTTCTTCTTTCCTTGCAGGCTTTTACTTTGAGACTCCAAGGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0016645 GO:0016646 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0052873 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FMN_red

Protein Analysis

199

Amino Acids

21.6

Weight (kDa)

8.99

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27890
fragaria_vesca	FvH4_7g03210 FvH4_7g03220
malus_domestica	MD02G1284500.v1.1 MD02G1284800.v1.1 MD07G1050400.v1.1
prunus_persica	Prupe.2G038100_v2.0.a1 Prupe.2G038100_v2.0.a1 Prupe.2G038200_v2.0.a1 Prupe.2G038400_v2.0.a1 Prupe.2G038400_v2.0.a1
pyrus_communis	pycom02g24230 pycom07g03630 pycom07g03640
rosa_chinensis	RchiOBHm_Chr1g0325161 RchiOBHm_Chr1g0325181 RchiOBHm_Chr1g0325221
rosa_laevigata	RLG00000030149 RLG00000030150 RLG00000030153
rosa_multiflora	Rmu_sc0001654.1_g000012 Rmu_sc0001654.1_g000020 Rmu_sc0007742.1_g000013 Rmu_sc0007742.1_g000019 Rmu_sc0007742.1_g000022
rosa_roxburghii	Rroxscaffold_4G00324850 Rroxscaffold_4G00324860 Rroxscaffold_4G00324870
rosa_rugosa	Rorug01G0050100 Rorug01G0050200
rosa_samantha	Rh1AG066000 Rh1AG066200 Rh1BG054100 Rh1BG054200 Rh1BG054300 Rh1CG067600 Rh1DG072400
rosa_wichuraiana	Rw0G010270 Rw1G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AccBSI	CCGCTC	1 cut(s)	132
AccII	CGCG	1 cut(s)	87
AciI	CCGC	5 cut(s)	8, 85, 87, 132, 390
AclWI	GGATC	2 cut(s)	232, 393
AcuI	CTGAAG	1 cut(s)	360
AfeI	AGCGCT	1 cut(s)	373
AjuI	GAANNNNNNNTTGG	2 cut(s)	396, 428
AluBI	AGCT	2 cut(s)	166, 248
AluI	AGCT	2 cut(s)	166, 248
Alw26I	GTCTC	2 cut(s)	295, 574
AlwI	GGATC	2 cut(s)	232, 393
Aor51HI	AGCGCT	1 cut(s)	373
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	5 cut(s)	11, 20, 166, 356, 359
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	60
BbvI	GCAGC	5 cut(s)	23, 32, 153, 343, 346
BccI	CCATC	1 cut(s)	417
BcoDI	GTCTC	2 cut(s)	295, 574
BfoI	RGCGCY	1 cut(s)	375
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	8 cut(s)	9, 12, 21, 88, 133, 167, 357, 360
BlsI	GCNGC	8 cut(s)	10, 13, 22, 89, 134, 168, 358, 361
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	3 cut(s)	61, 76, 385
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	2 cut(s)	332, 511
BmuI	ACTGGG	1 cut(s)	328
BsaJI	CCNNGG	3 cut(s)	85, 531, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bse1I	ACTGG	1 cut(s)	323
BseDI	CCNNGG	3 cut(s)	85, 531, 586
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	323
BseXI	GCAGC	5 cut(s)	23, 32, 153, 343, 346
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	387
BsmAI	GTCTC	2 cut(s)	295, 574
BsmBI	CGTCTC	1 cut(s)	295
BsmI	GAATGC	3 cut(s)	255, 313, 478
BsnI	GGCC	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	184, 237, 398
BspACI	CCGC	5 cut(s)	8, 85, 87, 132, 390
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	305
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	3 cut(s)	61, 76, 385
BspPI	GGATC	2 cut(s)	232, 393
BsrBI	CCGCTC	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	3 cut(s)	85, 531, 586
BssMI	GATC	3 cut(s)	184, 237, 398
BssT1I	CCWWGG	2 cut(s)	531, 586
Bst4CI	ACNGT	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	1 cut(s)	292
BstDSI	CCRYGG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	3 cut(s)	187, 240, 401
BstMAI	GTCTC	2 cut(s)	295, 574
BstMBI	GATC	3 cut(s)	184, 237, 398
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 20, 172, 353
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	5 cut(s)	23, 32, 153, 343, 346
BstX2I	RGATCY	2 cut(s)	184, 237
BstXI	CCANNNNNNTGG	1 cut(s)	342
BstYI	RGATCY	2 cut(s)	184, 237
BsuRI	GGCC	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	567
CfoI	GCGC	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	60
Cfr42I	CCGCGG	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	292
DpnI	GATC	3 cut(s)	186, 239, 400
DpnII	GATC	3 cut(s)	184, 237, 398
Eco130I	CCWWGG	2 cut(s)	531, 586
Eco47I	GGWCC	1 cut(s)	60
Eco47III	AGCGCT	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	360
EcoT14I	CCWWGG	2 cut(s)	531, 586
ErhI	CCWWGG	2 cut(s)	531, 586
Esp3I	CGTCTC	1 cut(s)	295
FaiI	YATR	2 cut(s)	158, 368
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
Fnu4HI	GCNGC	8 cut(s)	9, 12, 21, 88, 133, 167, 357, 360
Fsp4HI	GCNGC	8 cut(s)	9, 12, 21, 88, 133, 167, 357, 360
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	8 cut(s)	9, 12, 21, 88, 133, 167, 357, 360
HaeII	RGCGCY	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	1 cut(s)	387
HhaI	GCGC	1 cut(s)	374
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HinfI	GANTC	2 cut(s)	426, 582
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	1 cut(s)	261
Hpy166II	GTNNAC	2 cut(s)	154, 395
Hpy188I	TCNGA	3 cut(s)	234, 242, 425
Hpy188III	TCNNGA	5 cut(s)	188, 327, 378, 396, 469
Hpy8I	GTNNAC	2 cut(s)	154, 395
Hpy99I	CGWCG	2 cut(s)	221, 234
HpyAV	CCTTC	3 cut(s)	65, 185, 449
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	6 cut(s)	20, 311, 362, 491, 524, 565
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 20, 172, 353
HpyF3I	CTNAG	1 cut(s)	292
HpySE526I	ACGT	1 cut(s)	150
HspAI	GCGC	1 cut(s)	372
KspI	CCGCGG	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	184, 237, 398
LmnI	GCTCC	1 cut(s)	389
Lsp1109I	GCAGC	5 cut(s)	23, 32, 153, 343, 346
LweI	GCATC	2 cut(s)	332, 511
MaeII	ACGT	1 cut(s)	150
MalI	GATC	3 cut(s)	186, 239, 400
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	3 cut(s)	184, 237, 398
MboII	GAAGA	4 cut(s)	247, 404, 457, 545
MflI	RGATCY	2 cut(s)	184, 237
MluCI	AATT	4 cut(s)	280, 363, 516, 539
MlyI	GAGTC	2 cut(s)	435, 576
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	6 cut(s)	101, 190, 214, 277, 374, 495
MseI	TTAA	2 cut(s)	515, 542
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	1 cut(s)	387
Mva1269I	GAATGC	3 cut(s)	255, 313, 478
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	4 cut(s)	17, 20, 172, 353
NdeII	GATC	3 cut(s)	184, 237, 398
NlaIV	GGNNCC	3 cut(s)	61, 76, 385
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PctI	GAATGC	3 cut(s)	255, 313, 478
PkrI	GCNGC	8 cut(s)	10, 13, 22, 89, 134, 168, 358, 361
PleI	GAGTC	2 cut(s)	434, 576
PpsI	GAGTC	2 cut(s)	434, 576
PsiI	TTATAA	1 cut(s)	368
PspN4I	GGNNCC	3 cut(s)	61, 76, 385
PspPI	GGNCC	1 cut(s)	60
PsuI	RGATCY	2 cut(s)	184, 237
SacII	CCGCGG	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	515, 542
SatI	GCNGC	8 cut(s)	9, 12, 21, 88, 133, 167, 357, 360
Sau3AI	GATC	3 cut(s)	184, 237, 398
Sau96I	GGNCC	1 cut(s)	60
SchI	GAGTC	2 cut(s)	435, 576
SetI	ASST	7 cut(s)	76, 153, 168, 214, 250, 274, 441
SfaNI	GCATC	2 cut(s)	332, 511
Sfr303I	CCGCGG	1 cut(s)	88
SgrBI	CCGCGG	1 cut(s)	88
SinI	GGWCC	1 cut(s)	60
Sse9I	AATT	4 cut(s)	280, 363, 516, 539
SsiI	CCGC	5 cut(s)	8, 85, 87, 132, 390
StyI	CCWWGG	2 cut(s)	531, 586
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	161, 219, 498
TasI	AATT	4 cut(s)	280, 363, 516, 539
TauI	GCSGC	3 cut(s)	11, 90, 135
Tru1I	TTAA	2 cut(s)	515, 542
Tru9I	TTAA	2 cut(s)	515, 542
TscAI	CASTG	1 cut(s)	177
TseI	GCWGC	5 cut(s)	11, 20, 166, 356, 359
TspDTI	ATGAA	2 cut(s)	431, 436
TspGWI	ACGGA	3 cut(s)	52, 56, 277
TspRI	CASTG	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.