Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002804

Physical Location & Seq

Genomic Coordinates Forward (+)

3069614 .. 3071642

Gene Structure 2029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g03630.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAAGCTTCCGTTGCTGCAAAATCGCTCATAAGAGTTGCTGCCATTTCTGGGTCTCTTCGTAAAGCTTCCTACAACCGCGGTCTCATTCGTTCTGCGATCGAGATAAGTGAGGGAATGGTGGAGGGCGTGCAAATAGAGTACGTAGACATCTCGACGCTGCCACTGCTGAACACGGATCTGGAGAGAGACGGCACTTTTCCACCTGCCGTGGAAGCCTTTCGTCAGAAGATTCTGGAAGCTGATAGCATCCTCTTTGCTTCTCCTGAGTACAATTACTCCATCGCCGCACCTCTAAAGAATGCAATTGACTGGGCATCTAGACCGCCGAATGTTTGGGCTGACAAGGCTGCTGCAATTGTAAGTGCTGGAGGAGGCTTTGGCGGTGGACGATCCCAATATCATCTTCGCCAAGTTGGAGTGTTTCTTGACCTTCATTTCATTAACAAGCCCGAGTTTTTCTTGAATGCATTCCAGCCTCCTGCAAAGTTTGACAGTGATGGAAACTTGATTGATGAACAGTCCAAGCAGAGGTTGAAGGAAGTTCTTTTAGCTTTGCAGTCAATGACTTTGAGACTTCAAAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0016645 GO:0016646 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0052873 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FMN_red

Protein Analysis

197

Amino Acids

21.55

Weight (kDa)

6.75

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27890
fragaria_vesca	FvH4_7g03210 FvH4_7g03220
malus_domestica	MD02G1284500.v1.1 MD02G1284800.v1.1 MD07G1050400.v1.1
prunus_persica	Prupe.2G038100_v2.0.a1 Prupe.2G038100_v2.0.a1 Prupe.2G038200_v2.0.a1 Prupe.2G038400_v2.0.a1 Prupe.2G038400_v2.0.a1
pyrus_communis	pycom02g24230 pycom07g03630 pycom07g03640
rosa_chinensis	RchiOBHm_Chr1g0325161 RchiOBHm_Chr1g0325181 RchiOBHm_Chr1g0325221
rosa_laevigata	RLG00000030149 RLG00000030150 RLG00000030153
rosa_multiflora	Rmu_sc0001654.1_g000012 Rmu_sc0001654.1_g000020 Rmu_sc0007742.1_g000013 Rmu_sc0007742.1_g000019 Rmu_sc0007742.1_g000022
rosa_roxburghii	Rroxscaffold_4G00324850 Rroxscaffold_4G00324860 Rroxscaffold_4G00324870
rosa_rugosa	Rorug01G0050100 Rorug01G0050200
rosa_samantha	Rh1AG066000 Rh1AG066200 Rh1BG054100 Rh1BG054200 Rh1BG054300 Rh1CG067600 Rh1DG072400
rosa_wichuraiana	Rw0G010270 Rw1G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	214
Acc36I	ACCTGC	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	81
AciI	CCGC	5 cut(s)	79, 81, 288, 326, 384
AclWI	GGATC	2 cut(s)	186, 387
AfaI	GTAC	2 cut(s)	143, 272
AfiI	CCNNNNNNNGG	2 cut(s)	51, 531
AgsI	TTSAA	3 cut(s)	466, 538, 581
AjuI	GAANNNNNNNTTGG	2 cut(s)	390, 422
AluBI	AGCT	4 cut(s)	8, 68, 242, 554
AluI	AGCT	4 cut(s)	8, 68, 242, 554
Alw26I	GTCTC	4 cut(s)	60, 89, 183, 568
AlwI	GGATC	2 cut(s)	186, 387
Ama87I	CYCGRG	1 cut(s)	452
ApeKI	GCWGC	5 cut(s)	17, 41, 160, 350, 353
Asp700I	GAANNNNTTC	2 cut(s)	219, 470
AvaI	CYCGRG	1 cut(s)	452
BbvI	GCAGC	5 cut(s)	4, 28, 147, 337, 340
BccI	CCATC	2 cut(s)	290, 494
BceAI	ACGGC	2 cut(s)	194, 208
BcoDI	GTCTC	4 cut(s)	60, 89, 183, 568
BfaI	CTAG	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	214
BisI	GCNGC	6 cut(s)	18, 42, 161, 288, 351, 354
BlsI	GCNGC	6 cut(s)	19, 43, 162, 289, 352, 355
BmeT110I	CYCGRG	1 cut(s)	452
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	2 cut(s)	258, 326
BmuI	ACTGGG	1 cut(s)	322
BpmI	CTGGAG	2 cut(s)	203, 390
BsaAI	YACGTR	1 cut(s)	145
BsaI	GGTCTC	2 cut(s)	60, 89
BsaJI	CCNNGG	2 cut(s)	79, 210
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 531
Bse1I	ACTGG	1 cut(s)	317
BseDI	CCNNGG	2 cut(s)	79, 210
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	51, 531
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	5 cut(s)	4, 28, 147, 337, 340
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	102
BsiEI	CGRYCG	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	452
BslI	CCNNNNNNNGG	2 cut(s)	51, 531
BsmAI	GTCTC	4 cut(s)	60, 89, 183, 568
BsmBI	CGTCTC	1 cut(s)	183
BsmI	GAATGC	3 cut(s)	307, 470, 472
Bso31I	GGTCTC	2 cut(s)	60, 89
BsoBI	CYCGRG	1 cut(s)	452
Bsp143I	GATC	3 cut(s)	99, 178, 392
BspACI	CCGC	5 cut(s)	79, 81, 288, 326, 384
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	81
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	2 cut(s)	186, 387
BspTNI	GGTCTC	2 cut(s)	60, 89
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	2 cut(s)	79, 210
BssMI	GATC	3 cut(s)	99, 178, 392
Bst4CI	ACNGT	2 cut(s)	497, 522
Bst6I	CTCTTC	1 cut(s)	63
BstBAI	YACGTR	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	267
BstDSI	CCRYGG	2 cut(s)	79, 210
BstF5I	GGATG	1 cut(s)	249
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	3 cut(s)	102, 181, 395
BstMAI	GTCTC	4 cut(s)	60, 89, 183, 568
BstMBI	GATC	3 cut(s)	99, 178, 392
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 166, 215, 347
BstSNI	TACGTA	1 cut(s)	145
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	5 cut(s)	4, 28, 147, 337, 340
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BtgI	CCRYGG	2 cut(s)	79, 210
BtgZI	GCGATG	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	249
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	2 cut(s)	164, 502
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	131
Cfr42I	CCGCGG	1 cut(s)	82
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	142, 271
CviQI	GTAC	2 cut(s)	142, 271
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	3 cut(s)	101, 180, 394
DpnII	GATC	3 cut(s)	99, 178, 392
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco105I	TACGTA	1 cut(s)	145
Eco31I	GGTCTC	2 cut(s)	60, 89
Eco88I	CYCGRG	1 cut(s)	452
EcoT22I	ATGCAT	1 cut(s)	472
Esp3I	CGTCTC	1 cut(s)	183
FaiI	YATR	1 cut(s)	32
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	6 cut(s)	18, 42, 161, 288, 351, 354
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	6 cut(s)	18, 42, 161, 288, 351, 354
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	6 cut(s)	18, 42, 161, 288, 351, 354
GsuI	CTGGAG	2 cut(s)	203, 390
HgaI	GACGC	1 cut(s)	166
HindIII	AAGCTT	2 cut(s)	6, 66
HinfI	GANTC	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	148, 389
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	8 cut(s)	103, 154, 182, 236, 266, 321, 428, 463
Hpy8I	GTNNAC	2 cut(s)	148, 389
Hpy99I	CGWCG	1 cut(s)	160
HpyAV	CCTTC	2 cut(s)	443, 532
HpyCH4III	ACNGT	2 cut(s)	497, 522
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	7 cut(s)	20, 133, 305, 356, 470, 485, 559
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 166, 215, 347
HpyF3I	CTNAG	1 cut(s)	267
HpySE526I	ACGT	1 cut(s)	144
KspI	CCGCGG	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	99, 178, 392
LpnPI	CCDG	9 cut(s)	36, 167, 219, 221, 279, 298, 354, 488, 495
Lsp1109I	GCAGC	5 cut(s)	4, 28, 147, 337, 340
LweI	GCATC	2 cut(s)	258, 326
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	144
MalI	GATC	3 cut(s)	101, 180, 394
MboI	GATC	3 cut(s)	99, 178, 392
MboII	GAAGA	3 cut(s)	50, 241, 398
MfeI	CAATTG	2 cut(s)	306, 357
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	3 cut(s)	274, 306, 357
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	8 cut(s)	106, 118, 263, 303, 365, 368, 489, 525
Mph1103I	ATGCAT	1 cut(s)	472
MroXI	GAANNNNTTC	2 cut(s)	219, 470
MseI	TTAA	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	81
MunI	CAATTG	2 cut(s)	306, 357
Mva1269I	GAATGC	3 cut(s)	307, 470, 472
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	4 cut(s)	14, 166, 215, 347
NdeII	GATC	3 cut(s)	99, 178, 392
NsiI	ATGCAT	1 cut(s)	472
PaqCI	CACCTGC	1 cut(s)	214
PctI	GAATGC	3 cut(s)	307, 470, 472
PdmI	GAANNNNTTC	2 cut(s)	219, 470
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	6 cut(s)	19, 43, 162, 289, 352, 355
Ple19I	CGATCG	1 cut(s)	102
Ppu21I	YACGTR	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	178
PvuI	CGATCG	1 cut(s)	102
RsaI	GTAC	2 cut(s)	143, 272
RsaNI	GTAC	2 cut(s)	142, 271
SacII	CCGCGG	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	6 cut(s)	18, 42, 161, 288, 351, 354
Sau3AI	GATC	3 cut(s)	99, 178, 392
SetI	ASST	9 cut(s)	10, 70, 147, 208, 244, 295, 435, 536, 556
SfaNI	GCATC	2 cut(s)	258, 326
Sfr303I	CCGCGG	1 cut(s)	82
SgrBI	CCGCGG	1 cut(s)	82
SnaBI	TACGTA	1 cut(s)	145
Sse9I	AATT	3 cut(s)	274, 306, 357
SsiI	CCGC	5 cut(s)	79, 81, 288, 326, 384
SspMI	CTAG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	497, 522
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	2 cut(s)	102, 155
TasI	AATT	3 cut(s)	274, 306, 357
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	2 cut(s)	171, 502
TseI	GCWGC	5 cut(s)	17, 41, 160, 350, 353
TspDTI	ATGAA	3 cut(s)	425, 430, 531
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	2 cut(s)	171, 502
XbaI	TCTAGA	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	147
XmnI	GAANNNNTTC	2 cut(s)	219, 470
XspI	CTAG	1 cut(s)	321
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.