Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002804

Physical Location & Seq

Genomic Coordinates Forward (+)

3075746 .. 3077778

Gene Structure 2033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g03640.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCTCTGTTCTTTTTCCTTTTATTGGGCTCCACACAAACAACTCGAACAAGCACTTGAATCTCCCACAACAACCACAACCACAACCACAACCACTCGTCGTCGTCTGTTCTTGCGGAGGAGACTCGCTGAAATGGAAGCTTCCGTTGCTGCAAGATCGATCATAAGAGTTGCTGCCATTTCTGGGTCTCTTCGTAAAGCTTCCTACAACCGCGGTCTCATTCGTTCTGCGATCGAGATAAGTAAGGCGACGGTGGAGGGCGTGCAAATAGATTACGTAGACATCTCGCCGCTGCCACTGCTGAACACGGATCTGGAGAGAGACGGCACTTTTCCACCTGCCGTGGAAGCCTTTCGTCAGAAGATTCTGGAAGCTGATAGCATCCTCTTTGCATCTCCTGAGTACAATTACTCCATCGCCGCACCTCTAAAGAATGCAATTGACTGGGCATCTAGACCGCCGAATGTTTGGGCTGACAAGGCTGCTGCAATTGTAAGTGCTGGAGGAGGCTTTGGCGGTGGACGATCTCAATATCATCTTCGCCAAGTTGGAGTGTTTCTTGACCTTCATTTCATTAACAAGCCCGAGTTTTTCTTGAATGCATTCCAGCCTCCTGCAAAGTTTGACAGTGATGGAAACTTGATTGATGAACAGTCCAAGCAGAGGTTGAAGGAAGTTCTTTTAGCTTTGCAGTCAATGACTTTGAGACTTCAAAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0016645 GO:0016646 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0052873 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FMN_red

Protein Analysis

241

Amino Acids

26.77

Weight (kDa)

9.51

Isoelectric Point (pI)

62.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27890
fragaria_vesca	FvH4_7g03210 FvH4_7g03220
malus_domestica	MD02G1284500.v1.1 MD02G1284800.v1.1 MD07G1050400.v1.1
prunus_persica	Prupe.2G038100_v2.0.a1 Prupe.2G038100_v2.0.a1 Prupe.2G038200_v2.0.a1 Prupe.2G038400_v2.0.a1 Prupe.2G038400_v2.0.a1
pyrus_communis	pycom02g24230 pycom07g03630 pycom07g03640
rosa_chinensis	RchiOBHm_Chr1g0325161 RchiOBHm_Chr1g0325181 RchiOBHm_Chr1g0325221
rosa_laevigata	RLG00000030149 RLG00000030150 RLG00000030153
rosa_multiflora	Rmu_sc0001654.1_g000012 Rmu_sc0001654.1_g000020 Rmu_sc0007742.1_g000013 Rmu_sc0007742.1_g000019 Rmu_sc0007742.1_g000022
rosa_roxburghii	Rroxscaffold_4G00324850 Rroxscaffold_4G00324860 Rroxscaffold_4G00324870
rosa_rugosa	Rorug01G0050100 Rorug01G0050200
rosa_samantha	Rh1AG066000 Rh1AG066200 Rh1BG054100 Rh1BG054200 Rh1BG054300 Rh1CG067600 Rh1DG072400
rosa_wichuraiana	Rw0G010270 Rw1G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	346
Acc36I	ACCTGC	1 cut(s)	346
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	1 cut(s)	213
AciI	CCGC	7 cut(s)	115, 211, 213, 290, 420, 458, 516
AclWI	GGATC	1 cut(s)	318
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	3 cut(s)	24, 183, 663
AgsI	TTSAA	4 cut(s)	59, 598, 670, 713
AluBI	AGCT	4 cut(s)	140, 200, 374, 686
AluI	AGCT	4 cut(s)	140, 200, 374, 686
Alw26I	GTCTC	5 cut(s)	115, 192, 221, 315, 700
AlwI	GGATC	1 cut(s)	318
Ama87I	CYCGRG	1 cut(s)	584
ApeKI	GCWGC	5 cut(s)	149, 173, 292, 482, 485
Asp700I	GAANNNNTTC	2 cut(s)	351, 602
AvaI	CYCGRG	1 cut(s)	584
BanII	GRGCYC	1 cut(s)	31
BbvI	GCAGC	5 cut(s)	136, 160, 279, 469, 472
BccI	CCATC	2 cut(s)	422, 626
BceAI	ACGGC	2 cut(s)	326, 340
BcoDI	GTCTC	5 cut(s)	115, 192, 221, 315, 700
BfaI	CTAG	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	346
BisI	GCNGC	7 cut(s)	150, 174, 290, 293, 420, 483, 486
BlsI	GCNGC	7 cut(s)	151, 175, 291, 294, 421, 484, 487
BmeT110I	CYCGRG	1 cut(s)	584
BmiI	GGNNCC	1 cut(s)	30
BmrI	ACTGGG	1 cut(s)	454
BmsI	GCATC	3 cut(s)	390, 401, 458
BmuI	ACTGGG	1 cut(s)	454
BpmI	CTGGAG	2 cut(s)	335, 522
Bsa29I	ATCGAT	1 cut(s)	158
BsaAI	YACGTR	1 cut(s)	277
BsaI	GGTCTC	2 cut(s)	192, 221
BsaJI	CCNNGG	2 cut(s)	211, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 183, 663
Bse1I	ACTGG	1 cut(s)	449
BseCI	ATCGAT	1 cut(s)	158
BseDI	CCNNGG	2 cut(s)	211, 342
BseGI	GGATG	1 cut(s)	381
BseLI	CCNNNNNNNGG	3 cut(s)	24, 183, 663
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	1 cut(s)	449
BseRI	GAGGAG	2 cut(s)	133, 519
BseXI	GCAGC	5 cut(s)	136, 160, 279, 469, 472
Bsh1236I	CGCG	1 cut(s)	213
Bsh1285I	CGRYCG	1 cut(s)	234
BshVI	ATCGAT	1 cut(s)	158
BsiEI	CGRYCG	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	584
BslI	CCNNNNNNNGG	3 cut(s)	24, 183, 663
BsmAI	GTCTC	5 cut(s)	115, 192, 221, 315, 700
BsmBI	CGTCTC	1 cut(s)	315
BsmI	GAATGC	3 cut(s)	439, 602, 604
Bso31I	GGTCTC	2 cut(s)	192, 221
BsoBI	CYCGRG	1 cut(s)	584
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	5 cut(s)	155, 159, 231, 310, 524
BspACI	CCGC	7 cut(s)	115, 211, 213, 290, 420, 458, 516
BspCNI	CTCAG	1 cut(s)	391
BspDI	ATCGAT	1 cut(s)	158
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	346
BspPI	GGATC	1 cut(s)	318
BspTNI	GGTCTC	2 cut(s)	192, 221
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	2 cut(s)	211, 342
BssMI	GATC	5 cut(s)	155, 159, 231, 310, 524
Bst4CI	ACNGT	3 cut(s)	253, 629, 654
Bst6I	CTCTTC	1 cut(s)	195
BstBAI	YACGTR	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	1 cut(s)	399
BstDSI	CCRYGG	2 cut(s)	211, 342
BstF5I	GGATG	1 cut(s)	381
BstFNI	CGCG	1 cut(s)	213
BstKTI	GATC	5 cut(s)	158, 162, 234, 313, 527
BstMAI	GTCTC	5 cut(s)	115, 192, 221, 315, 700
BstMBI	GATC	5 cut(s)	155, 159, 231, 310, 524
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 298, 347, 479
BstSNI	TACGTA	1 cut(s)	277
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	5 cut(s)	136, 160, 279, 469, 472
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
Bsu15I	ATCGAT	1 cut(s)	158
BsuTUI	ATCGAT	1 cut(s)	158
BtgI	CCRYGG	2 cut(s)	211, 342
BtgZI	GCGATG	1 cut(s)	400
BtsCI	GGATG	1 cut(s)	381
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	2 cut(s)	296, 634
BveI	ACCTGC	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	263
Cfr42I	CCGCGG	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	403
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	5 cut(s)	157, 161, 233, 312, 526
DpnII	GATC	5 cut(s)	155, 159, 231, 310, 524
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco105I	TACGTA	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	31
Eco31I	GGTCTC	2 cut(s)	192, 221
Eco88I	CYCGRG	1 cut(s)	584
EcoT22I	ATGCAT	1 cut(s)	604
EcoT38I	GRGCYC	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	315
FaiI	YATR	1 cut(s)	164
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	7 cut(s)	150, 174, 290, 293, 420, 483, 486
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	7 cut(s)	150, 174, 290, 293, 420, 483, 486
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	7 cut(s)	150, 174, 290, 293, 420, 483, 486
GsuI	CTGGAG	2 cut(s)	335, 522
HindIII	AAGCTT	2 cut(s)	138, 198
HinfI	GANTC	3 cut(s)	59, 123, 364
Hpy166II	GTNNAC	2 cut(s)	280, 521
Hpy188I	TCNGA	1 cut(s)	360
Hpy188III	TCNNGA	7 cut(s)	235, 314, 368, 398, 453, 560, 595
Hpy8I	GTNNAC	2 cut(s)	280, 521
Hpy99I	CGWCG	3 cut(s)	102, 105, 253
HpyAV	CCTTC	2 cut(s)	575, 664
HpyCH4III	ACNGT	3 cut(s)	253, 629, 654
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	8 cut(s)	152, 265, 392, 437, 488, 602, 617, 691
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 298, 347, 479
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	276
KspI	CCGCGG	1 cut(s)	214
Kzo9I	GATC	5 cut(s)	155, 159, 231, 310, 524
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	9 cut(s)	168, 299, 351, 353, 411, 430, 486, 620, 627
Lsp1109I	GCAGC	5 cut(s)	136, 160, 279, 469, 472
LweI	GCATC	3 cut(s)	390, 401, 458
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	1 cut(s)	276
MalI	GATC	5 cut(s)	157, 161, 233, 312, 526
MboI	GATC	5 cut(s)	155, 159, 231, 310, 524
MboII	GAAGA	3 cut(s)	182, 373, 530
MfeI	CAATTG	2 cut(s)	438, 489
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	3 cut(s)	406, 438, 489
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	8 cut(s)	111, 250, 395, 435, 497, 500, 621, 657
Mph1103I	ATGCAT	1 cut(s)	604
MroXI	GAANNNNTTC	2 cut(s)	351, 602
MseI	TTAA	1 cut(s)	576
MspA1I	CMGCKG	2 cut(s)	213, 292
MunI	CAATTG	2 cut(s)	438, 489
Mva1269I	GAATGC	3 cut(s)	439, 602, 604
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	4 cut(s)	146, 298, 347, 479
NdeII	GATC	5 cut(s)	155, 159, 231, 310, 524
NlaIV	GGNNCC	1 cut(s)	30
NsiI	ATGCAT	1 cut(s)	604
PaqCI	CACCTGC	1 cut(s)	346
PctI	GAATGC	3 cut(s)	439, 602, 604
PdmI	GAANNNNTTC	2 cut(s)	351, 602
PfeI	GAWTC	2 cut(s)	59, 364
PkrI	GCNGC	7 cut(s)	151, 175, 291, 294, 421, 484, 487
Ple19I	CGATCG	1 cut(s)	234
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
Ppu21I	YACGTR	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	310
PvuI	CGATCG	1 cut(s)	234
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SacII	CCGCGG	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	7 cut(s)	150, 174, 290, 293, 420, 483, 486
Sau3AI	GATC	5 cut(s)	155, 159, 231, 310, 524
SchI	GAGTC	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	9 cut(s)	142, 202, 279, 340, 376, 427, 567, 668, 688
SfaNI	GCATC	3 cut(s)	390, 401, 458
Sfr303I	CCGCGG	1 cut(s)	214
SgrBI	CCGCGG	1 cut(s)	214
SnaBI	TACGTA	1 cut(s)	277
Sse9I	AATT	3 cut(s)	406, 438, 489
SsiI	CCGC	7 cut(s)	115, 211, 213, 290, 420, 458, 516
SspMI	CTAG	1 cut(s)	453
TaaI	ACNGT	3 cut(s)	253, 629, 654
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	3 cut(s)	45, 158, 234
TasI	AATT	3 cut(s)	406, 438, 489
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	2 cut(s)	292, 422
TfiI	GAWTC	2 cut(s)	59, 364
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	2 cut(s)	303, 634
TseI	GCWGC	5 cut(s)	149, 173, 292, 482, 485
TspDTI	ATGAA	3 cut(s)	557, 562, 663
TspGWI	ACGGA	2 cut(s)	133, 323
TspRI	CASTG	2 cut(s)	303, 634
XbaI	TCTAGA	1 cut(s)	452
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	2 cut(s)	351, 602
XspI	CTAG	1 cut(s)	453
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.