Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002804

Physical Location & Seq

Genomic Coordinates Reverse (-)

3551402 .. 3553179

Gene Structure 1778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAGTCCATCAGAGTGTTGGCGCTCTGTGGCTCTGTTCGTCAAGCTTCCTACAACCGCGCCCTCATTCGTTCTGCGATTGAGATAAGCAAGGGGTCGATCCAGGGCTTAGAAATCGAGGACGTCGACATCACGGCGCTGCCGATGCTGAACACCGATCTTGAGGACGGACAGAGATTTCCACCGGTGGTCGAAGCGTTCCGGCAGAAGATTTTAGAGGCTGACAGCTTTCTCTTTGCCTCGCCCGAGTACAATTACTCTATCTCCGCACCACTGAAAAATGCTCTTGACTGGGGATCTAGACCCCCCAATGTGTGGGCTGATAAAGCTGCTGCGATTGTAAGTGCTTCAGGAGGTAGTGGTGGTTCAAGATCTCAATACCATCTTCGCCAAATCGGAGTTTTTCTCGATCTTCATTTCATCAACAAGCCTGAGCTTTTCCTTGATGCATTCCATAATCCGGGAAAATTTGACAAAAATGGCGACTTGATTGATGCAGAGACCAAGGAGAGACTAAAACAAGTTCTACTATCATTGCAGACTTTTACTTTGAGACTCCAAGGAAGGTCAAAGTTAAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0016645 GO:0016646 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0052873 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FMN_red

Protein Analysis

195

Amino Acids

21.53

Weight (kDa)

6.84

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_red	PF03358	5 - 152	2.1e-39	NADPH-dependent FMN reductase
Flavodoxin_2	PF02525	5 - 121	8.6e-10	Flavodoxin-like fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27890
fragaria_vesca	FvH4_7g03210 FvH4_7g03220
malus_domestica	MD02G1284500.v1.1 MD02G1284800.v1.1 MD07G1050400.v1.1
prunus_persica	Prupe.2G038100_v2.0.a1 Prupe.2G038100_v2.0.a1 Prupe.2G038200_v2.0.a1 Prupe.2G038400_v2.0.a1 Prupe.2G038400_v2.0.a1
pyrus_communis	pycom02g24230 pycom07g03630 pycom07g03640
rosa_chinensis	RchiOBHm_Chr1g0325161 RchiOBHm_Chr1g0325181 RchiOBHm_Chr1g0325221
rosa_laevigata	RLG00000030149 RLG00000030150 RLG00000030153
rosa_multiflora	Rmu_sc0001654.1_g000012 Rmu_sc0001654.1_g000020 Rmu_sc0007742.1_g000013 Rmu_sc0007742.1_g000019 Rmu_sc0007742.1_g000022
rosa_roxburghii	Rroxscaffold_4G00324850 Rroxscaffold_4G00324860 Rroxscaffold_4G00324870
rosa_rugosa	Rorug01G0050100 Rorug01G0050200
rosa_samantha	Rh1AG066000 Rh1AG066200 Rh1BG054100 Rh1BG054200 Rh1BG054300 Rh1CG067600 Rh1DG072400
rosa_wichuraiana	Rw0G010270 Rw1G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
AccB7I	CCANNNNNTGG	1 cut(s)	315
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	60
AciI	CCGC	2 cut(s)	58, 267
AclWI	GGATC	2 cut(s)	94, 304
AcsI	RAATTY	1 cut(s)	467
AcuI	CTGAAG	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	315, 460
AgeI	ACCGGT	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	369
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	4 cut(s)	47, 228, 329, 436
AluI	AGCT	4 cut(s)	47, 228, 329, 436
Alw26I	GTCTC	3 cut(s)	494, 505, 547
AlwI	GGATC	2 cut(s)	94, 304
Ama87I	CYCGRG	1 cut(s)	245
ApeKI	GCWGC	3 cut(s)	139, 329, 332
ApoI	RAATTY	1 cut(s)	467
ArsI	GACNNNNNNTTYG	2 cut(s)	532, 564
AsiGI	ACCGGT	1 cut(s)	184
AspLEI	GCGC	3 cut(s)	25, 62, 139
AsuC2I	CCSGG	1 cut(s)	462
AvaI	CYCGRG	1 cut(s)	245
BbvI	GCAGC	3 cut(s)	126, 316, 319
BccI	CCATC	2 cut(s)	17, 390
BceAI	ACGGC	1 cut(s)	150
BciT130I	CCWGG	1 cut(s)	104
BcnI	CCSGG	1 cut(s)	462
BcoDI	GTCTC	3 cut(s)	494, 505, 547
BfaI	CTAG	1 cut(s)	300
BfoI	RGCGCY	2 cut(s)	26, 140
BglII	AGATCT	1 cut(s)	371
BisI	GCNGC	3 cut(s)	140, 330, 333
BlsI	GCNGC	3 cut(s)	141, 331, 334
Bme1390I	CCNGG	2 cut(s)	104, 462
BmeT110I	CYCGRG	1 cut(s)	245
BmrFI	CCNGG	2 cut(s)	104, 462
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	3 cut(s)	135, 436, 484
BmuI	ACTGGG	1 cut(s)	301
BplI	GAGNNNNNCTC	2 cut(s)	390, 422
Bpu10I	CCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	3 cut(s)	103, 504, 559
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 460
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	296
Bse3DI	GCAATG	1 cut(s)	533
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	3 cut(s)	103, 504, 559
BseLI	CCNNNNNNNGG	2 cut(s)	315, 460
BseMI	GCAATG	1 cut(s)	533
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	296
BseXI	GCAGC	3 cut(s)	126, 316, 319
Bsh1236I	CGCG	1 cut(s)	60
BshTI	ACCGGT	1 cut(s)	184
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	3 cut(s)	185, 202, 461
BslI	CCNNNNNNNGG	2 cut(s)	315, 460
BsmAI	GTCTC	3 cut(s)	494, 505, 547
BsmI	GAATGC	1 cut(s)	449
Bso31I	GGTCTC	1 cut(s)	494
BsoBI	CYCGRG	1 cut(s)	245
Bsp143I	GATC	5 cut(s)	99, 157, 296, 371, 409
BspACI	CCGC	2 cut(s)	58, 267
BspCNI	CTCAG	1 cut(s)	424
BspFNI	CGCG	1 cut(s)	60
BspPI	GGATC	2 cut(s)	94, 304
BspTNI	GGTCTC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	533
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	3 cut(s)	103, 504, 559
BssMI	GATC	5 cut(s)	99, 157, 296, 371, 409
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	2 cut(s)	504, 559
Bst2UI	CCWGG	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	109, 432
BstFNI	CGCG	1 cut(s)	60
BstH2I	RGCGCY	2 cut(s)	26, 140
BstHHI	GCGC	3 cut(s)	25, 62, 139
BstKTI	GATC	5 cut(s)	102, 160, 299, 374, 412
BstMAI	GTCTC	3 cut(s)	494, 505, 547
BstMBI	GATC	5 cut(s)	99, 157, 296, 371, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 326
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	2 cut(s)	102, 460
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	3 cut(s)	126, 316, 319
BstX2I	RGATCY	2 cut(s)	296, 371
BstYI	RGATCY	2 cut(s)	296, 371
BtsIMutI	CAGTG	1 cut(s)	272
CfoI	GCGC	3 cut(s)	25, 62, 139
Cfr10I	RCCGGY	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	250
CspAI	ACCGGT	1 cut(s)	184
CviJI	RGCY	9 cut(s)	33, 47, 108, 221, 228, 320, 329, 430, 436
CviKI_1	RGCY	9 cut(s)	33, 47, 108, 221, 228, 320, 329, 430, 436
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	2 cut(s)	109, 432
DpnI	GATC	5 cut(s)	101, 159, 298, 373, 411
DpnII	GATC	5 cut(s)	99, 157, 296, 371, 409
Eco130I	CCWWGG	2 cut(s)	504, 559
Eco31I	GGTCTC	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	2 cut(s)	504, 559
EcoT22I	ATGCAT	1 cut(s)	451
ErhI	CCWWGG	2 cut(s)	504, 559
FaiI	YATR	1 cut(s)	456
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	140, 330, 333
Fsp4HI	GCNGC	3 cut(s)	140, 330, 333
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	3 cut(s)	24, 61, 138
GluI	GCNGC	3 cut(s)	140, 330, 333
HaeII	RGCGCY	2 cut(s)	26, 140
HapII	CCGG	3 cut(s)	185, 202, 461
HhaI	GCGC	3 cut(s)	25, 62, 139
Hin1I	GRCGYC	1 cut(s)	123
Hin6I	GCGC	3 cut(s)	23, 60, 137
HinP1I	GCGC	3 cut(s)	23, 60, 137
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	2 cut(s)	5, 555
HpaII	CCGG	3 cut(s)	185, 202, 461
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	14, 398
Hpy188III	TCNNGA	6 cut(s)	161, 287, 300, 351, 369, 407
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	558
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	3 cut(s)	449, 497, 538
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 326
HpyF3I	CTNAG	2 cut(s)	109, 432
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	123
HspAI	GCGC	3 cut(s)	23, 60, 137
Kzo9I	GATC	5 cut(s)	99, 157, 296, 371, 409
LpnPI	CCDG	8 cut(s)	89, 116, 198, 215, 277, 336, 444, 474
Lsp1109I	GCAGC	3 cut(s)	126, 316, 319
LweI	GCATC	3 cut(s)	135, 436, 484
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	123
MalI	GATC	5 cut(s)	101, 159, 298, 373, 411
MboI	GATC	5 cut(s)	99, 157, 296, 371, 409
MboII	GAAGA	3 cut(s)	220, 377, 404
MflI	RGATCY	2 cut(s)	296, 371
MluCI	AATT	3 cut(s)	253, 467, 580
MlyI	GAGTC	2 cut(s)	14, 549
MnlI	CCTC	6 cut(s)	74, 112, 157, 211, 250, 347
Mph1103I	ATGCAT	1 cut(s)	451
MseI	TTAA	2 cut(s)	575, 583
MslI	CAYNNNNRTG	1 cut(s)	14
MspI	CCGG	3 cut(s)	185, 202, 461
MspR9I	CCNGG	2 cut(s)	104, 462
Mva1269I	GAATGC	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	145, 326
NciI	CCSGG	1 cut(s)	462
NdeII	GATC	5 cut(s)	99, 157, 296, 371, 409
NsiI	ATGCAT	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 140
PctI	GAATGC	1 cut(s)	449
PflMI	CCANNNNNTGG	1 cut(s)	315
PfoI	TCCNGGA	1 cut(s)	460
PinAI	ACCGGT	1 cut(s)	184
PkrI	GCNGC	3 cut(s)	141, 331, 334
PleI	GAGTC	2 cut(s)	13, 549
PpsI	GAGTC	2 cut(s)	13, 549
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PsrI	GAACNNNNNNTAC	2 cut(s)	349, 381
PsuI	RGATCY	2 cut(s)	296, 371
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	14
SalI	GTCGAC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	575, 583
SatI	GCNGC	3 cut(s)	140, 330, 333
Sau3AI	GATC	5 cut(s)	99, 157, 296, 371, 409
SchI	GAGTC	2 cut(s)	14, 549
ScrFI	CCNGG	2 cut(s)	104, 462
SetI	ASST	7 cut(s)	49, 126, 230, 331, 358, 438, 569
SfaNI	GCATC	3 cut(s)	135, 436, 484
SgrAI	CRCCGGYG	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	3 cut(s)	253, 467, 580
SsiI	CCGC	2 cut(s)	58, 267
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	2 cut(s)	102, 460
StyI	CCWWGG	2 cut(s)	504, 559
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	5 cut(s)	98, 117, 126, 192, 408
TasI	AATT	3 cut(s)	253, 467, 580
TatI	WGTACW	1 cut(s)	249
Tru1I	TTAA	2 cut(s)	575, 583
Tru9I	TTAA	2 cut(s)	575, 583
TscAI	CASTG	1 cut(s)	279
TseI	GCWGC	3 cut(s)	139, 329, 332
TspDTI	ATGAA	2 cut(s)	404, 409
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	279
Van91I	CCANNNNNTGG	1 cut(s)	315
XapI	RAATTY	1 cut(s)	467
XbaI	TCTAGA	1 cut(s)	299
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	1 cut(s)	300
ZraI	GACGTC	1 cut(s)	124
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.