Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002804

Physical Location & Seq

Genomic Coordinates Reverse (-)

7908653 .. 7910205

Gene Structure 1553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG054200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAGTCGATAAAAGTGGCGGCGCTTTCTGGGTCCATTCGTCAATCCTCCCGTAACCGCGGCCTCATTCGTTCTGCGATTGAGATAAGCAAGGGGTCAATCGCCGGCGTAGAAATCGATGACGTCGACATCACGGCGCTACCGATGCTGAACACGGATCTGGAGGGCGGAGGGAAATTTCCACCGGTGGTTGAGGCGTTTCGTCAGAAGATTTTAGAGGCTGATAGCATTCTCTTTGCTTCTCCCGAGTACAATTACTCTGTCTCTGCACCTCTGAAAAATGCTATTGATTGGGCATCTAGACCCCCCAATGTGTGGGCTGATAAAGCTGCTGCAATTATAAGTGCTTCAGGAAGTTCTGGTGGCTCAAGATCTCATTACCATCTTCGCCAAATCGGAGTTTTTCTTGATCTTCATTTCATCAACAAGCCCGAGCTTTTCATTAATGCATTCCATCCTCCGGGAAAATTCGACAAAAATGGTGACTTGATTGATGCACAGACCAAGGAGCGTCTAAAACAAGTTCTGCTATCATTGCAGACTTTTACTTTGAGACTCCAAGGAAGATCAAAGTTAAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0016645 GO:0016646 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0052873 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FMN_red

Protein Analysis

194

Amino Acids

21.21

Weight (kDa)

9.36

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_red	PF03358	4 - 151	1.7e-38	NADPH-dependent FMN reductase
Flavodoxin_2	PF02525	5 - 120	6.9e-10	Flavodoxin-like fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27890
fragaria_vesca	FvH4_7g03210 FvH4_7g03220
malus_domestica	MD02G1284500.v1.1 MD02G1284800.v1.1 MD07G1050400.v1.1
prunus_persica	Prupe.2G038100_v2.0.a1 Prupe.2G038100_v2.0.a1 Prupe.2G038200_v2.0.a1 Prupe.2G038400_v2.0.a1 Prupe.2G038400_v2.0.a1
pyrus_communis	pycom02g24230 pycom07g03630 pycom07g03640
rosa_chinensis	RchiOBHm_Chr1g0325161 RchiOBHm_Chr1g0325181 RchiOBHm_Chr1g0325221
rosa_laevigata	RLG00000030149 RLG00000030150 RLG00000030153
rosa_multiflora	Rmu_sc0001654.1_g000012 Rmu_sc0001654.1_g000020 Rmu_sc0007742.1_g000013 Rmu_sc0007742.1_g000019 Rmu_sc0007742.1_g000022
rosa_roxburghii	Rroxscaffold_4G00324850 Rroxscaffold_4G00324860 Rroxscaffold_4G00324870
rosa_rugosa	Rorug01G0050100 Rorug01G0050200
rosa_samantha	Rh1AG066000 Rh1AG066200 Rh1BG054100 Rh1BG054200 Rh1BG054300 Rh1CG067600 Rh1DG072400
rosa_wichuraiana	Rw0G010270 Rw1G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	341
AatII	GACGTC	1 cut(s)	126
AccB7I	CCANNNNNTGG	1 cut(s)	315
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	60
AciI	CCGC	4 cut(s)	20, 58, 60, 168
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	2 cut(s)	176, 467
AcuI	CTGAAG	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	315, 460
AgeI	ACCGGT	1 cut(s)	184
AluBI	AGCT	2 cut(s)	329, 436
AluI	AGCT	2 cut(s)	329, 436
Alw26I	GTCTC	2 cut(s)	268, 547
AlwI	GGATC	1 cut(s)	165
Ama87I	CYCGRG	2 cut(s)	245, 431
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	2 cut(s)	329, 332
ApoI	RAATTY	2 cut(s)	176, 467
ArsI	GACNNNNNNTTYG	2 cut(s)	532, 564
AseI	ATTAAT	1 cut(s)	444
AsiGI	ACCGGT	1 cut(s)	184
AspLEI	GCGC	2 cut(s)	25, 139
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	1 cut(s)	494
AvaI	CYCGRG	2 cut(s)	245, 431
AvaII	GGWCC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	316, 319
BccI	CCATC	2 cut(s)	390, 462
BceAI	ACGGC	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	462
BcoDI	GTCTC	2 cut(s)	268, 547
BfaI	CTAG	1 cut(s)	300
BfoI	RGCGCY	2 cut(s)	26, 140
BglII	AGATCT	1 cut(s)	371
BisI	GCNGC	4 cut(s)	21, 61, 330, 333
BlsI	GCNGC	4 cut(s)	22, 62, 331, 334
Bme1390I	CCNGG	1 cut(s)	462
Bme18I	GGWCC	1 cut(s)	33
BmeT110I	CYCGRG	2 cut(s)	245, 431
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	462
BmsI	GCATC	3 cut(s)	135, 305, 484
BpmI	CTGGAG	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	352
BpuMI	CCSGG	1 cut(s)	462
Bsa29I	ATCGAT	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	58, 504, 559
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 460
Bse118I	RCCGGY	2 cut(s)	104, 184
Bse3DI	GCAATG	1 cut(s)	533
BseCI	ATCGAT	1 cut(s)	117
BseDI	CCNNGG	3 cut(s)	58, 504, 559
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	2 cut(s)	315, 460
BseMI	GCAATG	1 cut(s)	533
BseXI	GCAGC	2 cut(s)	316, 319
BsgI	GTGCAG	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	63
BshTI	ACCGGT	1 cut(s)	184
BshVI	ATCGAT	1 cut(s)	117
BsiHKCI	CYCGRG	2 cut(s)	245, 431
BsiSI	CCGG	3 cut(s)	105, 185, 461
BslI	CCNNNNNNNGG	2 cut(s)	315, 460
BsmAI	GTCTC	2 cut(s)	268, 547
BsmI	GAATGC	2 cut(s)	228, 449
BsnI	GGCC	1 cut(s)	63
BsoBI	CYCGRG	2 cut(s)	245, 431
Bsp143I	GATC	4 cut(s)	157, 371, 409, 566
BspACI	CCGC	4 cut(s)	20, 58, 60, 168
BspANI	GGCC	1 cut(s)	63
BspDI	ATCGAT	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	34
BspPI	GGATC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	533
BsrFI	RCCGGY	2 cut(s)	104, 184
BssAI	RCCGGY	2 cut(s)	104, 184
BssECI	CCNNGG	3 cut(s)	58, 504, 559
BssMI	GATC	4 cut(s)	157, 371, 409, 566
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	2 cut(s)	504, 559
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	106
BstDSI	CCRYGG	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	454
BstFNI	CGCG	1 cut(s)	60
BstH2I	RGCGCY	2 cut(s)	26, 140
BstHHI	GCGC	2 cut(s)	25, 139
BstKTI	GATC	4 cut(s)	160, 374, 412, 569
BstMAI	GTCTC	2 cut(s)	268, 547
BstMBI	GATC	4 cut(s)	157, 371, 409, 566
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 326, 535
BstSCI	CCNGG	1 cut(s)	460
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	316, 319
BstX2I	RGATCY	2 cut(s)	157, 371
BstYI	RGATCY	2 cut(s)	157, 371
Bsu15I	ATCGAT	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	63
BsuTUI	ATCGAT	1 cut(s)	117
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	106
CfoI	GCGC	2 cut(s)	25, 139
Cfr10I	RCCGGY	2 cut(s)	104, 184
Cfr13I	GGNCC	1 cut(s)	33
Cfr42I	CCGCGG	1 cut(s)	61
ClaI	ATCGAT	1 cut(s)	117
CseI	GACGC	1 cut(s)	500
Csp6I	GTAC	1 cut(s)	250
CspAI	ACCGGT	1 cut(s)	184
CviJI	RGCY	7 cut(s)	63, 221, 320, 329, 366, 430, 436
CviKI_1	RGCY	7 cut(s)	63, 221, 320, 329, 366, 430, 436
CviQI	GTAC	1 cut(s)	250
DpnI	GATC	4 cut(s)	159, 373, 411, 568
DpnII	GATC	4 cut(s)	157, 371, 409, 566
EciI	GGCGGA	1 cut(s)	183
Eco130I	CCWWGG	2 cut(s)	504, 559
Eco47I	GGWCC	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	333
Eco88I	CYCGRG	2 cut(s)	245, 431
EcoT14I	CCWWGG	2 cut(s)	504, 559
EcoT22I	ATGCAT	1 cut(s)	451
ErhI	CCWWGG	2 cut(s)	504, 559
FaiI	YATR	1 cut(s)	341
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	4 cut(s)	21, 61, 330, 333
FokI	GGATG	1 cut(s)	441
Fsp4HI	GCNGC	4 cut(s)	21, 61, 330, 333
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	2 cut(s)	24, 138
GluI	GCNGC	4 cut(s)	21, 61, 330, 333
GsuI	CTGGAG	1 cut(s)	182
HaeII	RGCGCY	2 cut(s)	26, 140
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	3 cut(s)	105, 185, 461
HgaI	GACGC	1 cut(s)	500
HhaI	GCGC	2 cut(s)	25, 139
Hin1I	GRCGYC	1 cut(s)	123
Hin6I	GCGC	2 cut(s)	23, 137
HinP1I	GCGC	2 cut(s)	23, 137
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	2 cut(s)	5, 555
HpaII	CCGG	3 cut(s)	105, 185, 461
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	3 cut(s)	207, 276, 398
Hpy188III	TCNNGA	6 cut(s)	161, 245, 300, 351, 369, 407
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	5 cut(s)	269, 335, 449, 497, 538
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 326, 535
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	123
HspAI	GCGC	2 cut(s)	23, 137
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
KspI	CCGCGG	1 cut(s)	61
Kzo9I	GATC	4 cut(s)	157, 371, 409, 566
LmnI	GCTCC	1 cut(s)	508
LpnPI	CCDG	7 cut(s)	15, 118, 146, 198, 336, 345, 474
Lsp1109I	GCAGC	2 cut(s)	316, 319
LweI	GCATC	3 cut(s)	135, 305, 484
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	53, 482
MalI	GATC	4 cut(s)	159, 373, 411, 568
MboI	GATC	4 cut(s)	157, 371, 409, 566
MboII	GAAGA	4 cut(s)	220, 377, 404, 576
MflI	RGATCY	2 cut(s)	157, 371
MluCI	AATT	5 cut(s)	176, 253, 336, 467, 580
MlyI	GAGTC	2 cut(s)	14, 549
MnlI	CCTC	8 cut(s)	58, 74, 157, 164, 187, 211, 282, 468
Mph1103I	ATGCAT	1 cut(s)	451
MreI	CGCCGGCG	1 cut(s)	104
MroNI	GCCGGC	1 cut(s)	104
MseI	TTAA	3 cut(s)	444, 575, 583
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	3 cut(s)	105, 185, 461
MspR9I	CCNGG	1 cut(s)	462
Mva1269I	GAATGC	2 cut(s)	228, 449
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	3 cut(s)	145, 326, 535
NaeI	GCCGGC	1 cut(s)	106
NciI	CCSGG	1 cut(s)	462
NdeII	GATC	4 cut(s)	157, 371, 409, 566
NgoMIV	GCCGGC	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	482
NsiI	ATGCAT	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 140
PctI	GAATGC	2 cut(s)	228, 449
PdiI	GCCGGC	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	315
PfoI	TCCNGGA	1 cut(s)	460
PinAI	ACCGGT	1 cut(s)	184
PkrI	GCNGC	4 cut(s)	22, 62, 331, 334
PleI	GAGTC	2 cut(s)	13, 549
PpsI	GAGTC	2 cut(s)	13, 549
PshBI	ATTAAT	1 cut(s)	444
PsiI	TTATAA	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	33
PsuI	RGATCY	2 cut(s)	157, 371
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SacII	CCGCGG	1 cut(s)	61
SalI	GTCGAC	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	444, 575, 583
SatI	GCNGC	4 cut(s)	21, 61, 330, 333
Sau3AI	GATC	4 cut(s)	157, 371, 409, 566
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	2 cut(s)	14, 549
ScrFI	CCNGG	1 cut(s)	462
SetI	ASST	4 cut(s)	126, 274, 331, 438
SfaNI	GCATC	3 cut(s)	135, 305, 484
Sfr303I	CCGCGG	1 cut(s)	61
SgrAI	CRCCGGYG	2 cut(s)	104, 184
SgrBI	CCGCGG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	5 cut(s)	176, 253, 336, 467, 580
SsiI	CCGC	4 cut(s)	20, 58, 60, 168
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	2 cut(s)	504, 559
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	4 cut(s)	8, 117, 126, 471
TasI	AATT	5 cut(s)	176, 253, 336, 467, 580
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	2 cut(s)	23, 63
Tru1I	TTAA	3 cut(s)	444, 575, 583
Tru9I	TTAA	3 cut(s)	444, 575, 583
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	2 cut(s)	329, 332
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	3 cut(s)	404, 409, 430
TspGWI	ACGGA	1 cut(s)	170
Van91I	CCANNNNNTGG	1 cut(s)	315
VpaK11BI	GGWCC	1 cut(s)	33
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	2 cut(s)	176, 467
XbaI	TCTAGA	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	1 cut(s)	300
ZraI	GACGTC	1 cut(s)	124
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.