AT3G27920
MYB Family

myb domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005570
Physical Location & Seq
Reverse (-)
10361790 .. 10363607
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27920.1

Sequence Viewer

Length: 687 bp
ATGAGAATAAGGAGAAGAGATGAAAAAGAGAATCAAGAATACAAGAAAGGTTTATGGACAGTTGAAGAAGACAACATCCTTATGGACTATGTTCTTAATCATGGCACTGGCCAATGGAACCGCATCGTCAGAAAAACTGGGCTAAAGAGATGTGGGAAAAGTTGTAGACTGAGATGGATGAATTATTTGAGCCCTAATGTGAACAAAGGCAATTTCACTGAACAAGAAGAAGACCTCATTATTCGTCTCCACAAGCTCCTCGGCAATAGATGGTCTTTGATAGCTAAAAGAGTACCGGGAAGAACAGATAACCAAGTCAAGAACTACTGGAACACTCATCTCAGCAAAAAACTCGTCGGAGATTACTCCTCCGCCGTCAAAACCACCGGAGAAGACGACGACTCTCCACCGTCATTGTTCATCACTGCCGCCACACCTTCTTCTTGTCATCATCAACAAGAAAATATCTACGAGAATATAGCCAAGAGCTTTAACGGCGTCGTATCAGCTTCGTACGAGGATAAACCAAAACAAGAACTGGCTCAAAAAGATGTCCTAATGGCAACTACTAATGATCCAAGTCACTATTATGGCAATAACGCTTTATGGGTTCATGACGACGATTTTGAGCTTAGTTCACTCGTAATGATGAATTTTGCTTCTGGTGATGTTGAGTACTGCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001708 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010026 GO:0010033 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010769 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022603 GO:0022604 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0032989 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045165 GO:0045168 GO:0045595 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048629 GO:0048731 GO:0048764 GO:0048765 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060284 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

228

Amino Acids

26.34

Weight (kDa)

6.66

Isoelectric Point (pI)

54.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 16 - 63 6.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 19 - 77 4.4e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 114 1.2e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 117 1.7e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 166
AciI CCGC 3 cut(s) 121, 372, 429
AclWI GGATC 1 cut(s) 569
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 1 cut(s) 652
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 3 cut(s) 294, 515, 677
AgsI TTSAA 1 cut(s) 65
AluBI AGCT 5 cut(s) 256, 284, 489, 509, 631
AluI AGCT 5 cut(s) 256, 284, 489, 509, 631
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 1 cut(s) 569
AoxI GGCC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 652
ArsI GACNNNNNNTTYG 4 cut(s) 339, 371, 608, 640
AsuC2I CCSGG 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 677
BalI TGGCCA 1 cut(s) 111
BanII GRGCYC 1 cut(s) 194
BbsI GAAGAC 3 cut(s) 75, 237, 399
BccI CCATC 2 cut(s) 168, 264
BceAI ACGGC 2 cut(s) 359, 511
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BcnI CCSGG 1 cut(s) 297
BcoDI GTCTC 1 cut(s) 251
BisI GCNGC 1 cut(s) 429
BlsI GCNGC 1 cut(s) 430
BmcAI AGTACT 1 cut(s) 677
Bme1390I CCNGG 1 cut(s) 297
BmiI GGNNCC 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 297
BmrI ACTGGG 1 cut(s) 147
BmsI GCATC 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 147
BpiI GAAGAC 3 cut(s) 75, 237, 399
BpuMI CCSGG 1 cut(s) 297
BsaHI GRCGYC 1 cut(s) 498
BsaJI CCNNGG 1 cut(s) 259
BsaWI WCCGGW 1 cut(s) 386
Bse1I ACTGG 4 cut(s) 112, 142, 332, 543
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 2 cut(s) 75, 183
BseMII CTCAG 2 cut(s) 161, 355
BseNI ACTGG 4 cut(s) 112, 142, 332, 543
BseRI GAGGAG 2 cut(s) 248, 358
BshFI GGCC 1 cut(s) 111
BsiSI CCGG 2 cut(s) 296, 387
BsiWI CGTACG 1 cut(s) 513
BsmAI GTCTC 1 cut(s) 251
BsmBI CGTCTC 1 cut(s) 251
BsnI GGCC 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 574
BspACI CCGC 3 cut(s) 121, 372, 429
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 2 cut(s) 162, 354
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 1 cut(s) 119
BspPI GGATC 1 cut(s) 569
BsrI ACTGG 4 cut(s) 112, 142, 332, 543
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 1 cut(s) 574
BssNI GRCGYC 1 cut(s) 498
Bst4CI ACNGT 2 cut(s) 61, 411
Bst6I CTCTTC 1 cut(s) 10
BstACI GRCGYC 1 cut(s) 498
BstDEI CTNAG 3 cut(s) 170, 341, 632
BstF5I GGATG 2 cut(s) 75, 183
BstKTI GATC 1 cut(s) 577
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 1 cut(s) 574
BstMWI GCNNNNNNNGC 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 295
BstV2I GAAGAC 3 cut(s) 75, 237, 399
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 2 cut(s) 75, 183
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 3 cut(s) 105, 216, 423
CciI TCATGA 1 cut(s) 613
CseI GACGC 1 cut(s) 487
Csp6I GTAC 3 cut(s) 293, 514, 676
CspCI CAANNNNNGTGG 2 cut(s) 396, 431
CviAII CATG 2 cut(s) 101, 614
CviQI GTAC 3 cut(s) 293, 514, 676
DdeI CTNAG 3 cut(s) 170, 341, 632
DpnI GATC 1 cut(s) 576
DpnII GATC 1 cut(s) 574
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 10
EarI CTCTTC 1 cut(s) 10
EciI GGCGGA 1 cut(s) 361
Eco24I GRGCYC 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 194
Esp3I CGTCTC 1 cut(s) 251
FaeI CATG 2 cut(s) 104, 617
FaiI YATR 8 cut(s) 55, 83, 90, 102, 479, 591, 607, 615
FatI CATG 2 cut(s) 100, 613
FblI GTMKAC 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 429
FokI GGATG 2 cut(s) 62, 190
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 429
GluI GCNGC 1 cut(s) 429
HaeIII GGCC 1 cut(s) 111
HapII CCGG 2 cut(s) 296, 387
HgaI GACGC 1 cut(s) 487
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 2 cut(s) 104, 617
HinfI GANTC 2 cut(s) 31, 401
HpaII CCGG 2 cut(s) 296, 387
HphI GGTGA 1 cut(s) 677
Hpy166II GTNNAC 3 cut(s) 167, 202, 638
Hpy188I TCNGA 2 cut(s) 131, 359
Hpy188III TCNNGA 3 cut(s) 35, 319, 614
Hpy8I GTNNAC 3 cut(s) 167, 202, 638
Hpy99I CGWCG 4 cut(s) 359, 401, 503, 623
HpyAV CCTTC 1 cut(s) 447
HpyCH4III ACNGT 2 cut(s) 61, 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 495
HpyF3I CTNAG 3 cut(s) 170, 341, 632
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 2 cut(s) 104, 617
Kzo9I GATC 1 cut(s) 574
LmnI GCTCC 1 cut(s) 261
LpnPI CCDG 7 cut(s) 93, 123, 309, 313, 400, 524, 648
LweI GCATC 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 581
MalI GATC 1 cut(s) 576
MboI GATC 1 cut(s) 574
MboII GAAGA 8 cut(s) 27, 77, 80, 239, 242, 312, 404, 432
MhlI GDGCHC 1 cut(s) 194
MlsI TGGCCA 1 cut(s) 111
MluCI AATT 3 cut(s) 181, 211, 652
MluNI TGGCCA 1 cut(s) 111
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 4 cut(s) 245, 269, 379, 511
Mox20I TGGCCA 1 cut(s) 111
MscI TGGCCA 1 cut(s) 111
MseI TTAA 2 cut(s) 96, 492
MslI CAYNNNNRTG 2 cut(s) 80, 588
Msp20I TGGCCA 1 cut(s) 111
MspI CCGG 2 cut(s) 296, 387
MspR9I CCNGG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 495
NciI CCSGG 1 cut(s) 297
NdeII GATC 1 cut(s) 574
NlaIII CATG 2 cut(s) 104, 617
NlaIV GGNNCC 1 cut(s) 119
NmeAIII GCCGAG 1 cut(s) 240
NmuCI GTSAC 1 cut(s) 581
PagI TCATGA 1 cut(s) 613
PfeI GAWTC 1 cut(s) 31
Pfl23II CGTACG 1 cut(s) 513
PkrI GCNGC 1 cut(s) 430
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
PspLI CGTACG 1 cut(s) 513
PspN4I GGNNCC 1 cut(s) 119
RsaI GTAC 3 cut(s) 294, 515, 677
RsaNI GTAC 3 cut(s) 293, 514, 676
RseI CAYNNNNRTG 2 cut(s) 80, 588
SaqAI TTAA 2 cut(s) 96, 492
SatI GCNGC 1 cut(s) 429
Sau3AI GATC 1 cut(s) 574
ScaI AGTACT 1 cut(s) 677
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 1 cut(s) 297
SduI GDGCHC 1 cut(s) 194
SetI ASST 8 cut(s) 52, 237, 258, 286, 439, 491, 511, 633
SfaNI GCATC 1 cut(s) 132
SmiMI CAYNNNNRTG 2 cut(s) 80, 588
Sse9I AATT 3 cut(s) 181, 211, 652
SsiI CCGC 3 cut(s) 121, 372, 429
StyD4I CCNGG 1 cut(s) 295
TaaI ACNGT 2 cut(s) 61, 411
TasI AATT 3 cut(s) 181, 211, 652
TatI WGTACW 1 cut(s) 675
TauI GCSGC 1 cut(s) 431
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 2 cut(s) 96, 492
Tru9I TTAA 2 cut(s) 96, 492
TscAI CASTG 3 cut(s) 112, 223, 430
TseFI GTSAC 1 cut(s) 581
Tsp45I GTSAC 1 cut(s) 581
TspDTI ATGAA 5 cut(s) 36, 194, 409, 602, 665
TspRI CASTG 3 cut(s) 112, 223, 430
XapI RAATTY 1 cut(s) 652
XmiI GTMKAC 1 cut(s) 166
ZrmI AGTACT 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.