Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005570

Physical Location & Seq

Genomic Coordinates Reverse (-)

26440293 .. 26441616

Gene Structure 1324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G253400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAAGCAGAAAATGAGTACAAGAAAGGGCTGTGGACAAAGGAGGAGGATAGGGTTCTGCTAGACTACGTAACCGTACATGGAAGTGGCCGCTGGAATCGCATTCCTAAGCTCACCGGTTTAAAGAGGAATGGAAAGAGCTGCAGATTGAGGTGGCTCAACTATCTGAGCCCAAATGTGAAACGCGGAGATTTTTCTGAGGAAGAAGAGGACCTCATCATCAGACTTCATAATCTCCTTGGCAACAGGTGGTCTCTGATTGCGGGGCGTGTACCAGGAAGAACTGACAACCAAGTCAAGAACTACTGGAACACTCGTTTGTGCAAGAAGCTTGGCTTCAAAAAGCAAACTCCAAAACCTCTTGCTTCCTCCTCCTCTGAAACTCCAAAAGCCCCGGACTCAAATACTAAGCAGTCTTGCAGCTGCGGCACCGGCAGCACTGTCAAAGACATGGAAGCTCTGCAAAATGACCAAAACCCATTGTTGGATGATATTGTTGCAGCTGAGGATTCAAATTCAAATGAAGAAATACAATGGATGACCGAGCATTGCGCAGAGTCGCTTTCTTATTCTGATGGTCATAATTTGATTAGCTGGGGCATGTTGGAATTTCTACAAGGGCACCCTCTTGAACTTTTGTACCAAAATTTTGAGTTGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045165 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0080090 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

221

Amino Acids

25.13

Weight (kDa)

6.0

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27920 AT5G14750 AT5G14750 AT5G14750 AT5G14750 AT5G40330
fragaria_vesca	FvH4_5g05280 FvH4_5g05280 FvH4_5g05280
malus_domestica	MD06G1174200.v1.1 MD13G1092300.v1.1 MD13G1092400.v1.1 MD14G1180700.v1.1 MD14G1180900.v1.1 MD14G1181000.v1.1 MD16G1093200.v1.1
prunus_persica	Prupe.1G253400_v2.0.a1 Prupe.5G174200_v2.0.a1
pyrus_communis	pycom06g15550 pycom13g08020 pycom14g15080
rosa_chinensis	RchiOBHm_Chr7g0193591
rosa_laevigata	RLG00000004258
rosa_roxburghii	Rroxscaffold_3G00261980
rosa_rugosa	Rorug07G0010600
rosa_samantha	Rh7AG137400 Rh7BG137600
rosa_wichuraiana	Rw7G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
Acc16I	TGCGCA	1 cut(s)	553
AccB1I	GGYRCC	2 cut(s)	428, 621
AccII	CGCG	1 cut(s)	186
AciI	CCGC	4 cut(s)	91, 186, 263, 426
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	3 cut(s)	514, 608, 646
AfaI	GTAC	4 cut(s)	20, 78, 273, 641
AfiI	CCNNNNNNNGG	1 cut(s)	484
AgeI	ACCGGT	1 cut(s)	116
AgsI	TTSAA	4 cut(s)	340, 513, 519, 632
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	7 cut(s)	112, 141, 331, 423, 458, 503, 594
AluI	AGCT	7 cut(s)	112, 141, 331, 423, 458, 503, 594
Alw26I	GTCTC	1 cut(s)	258
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	5 cut(s)	141, 420, 423, 435, 500
ApoI	RAATTY	3 cut(s)	514, 608, 646
AsiGI	ACCGGT	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	554
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	624
BaeI	ACNNNNGTAYC	2 cut(s)	623, 656
BanI	GGYRCC	2 cut(s)	428, 621
BanII	GRGCYC	1 cut(s)	173
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	5 cut(s)	128, 410, 432, 447, 512
BccI	CCATC	1 cut(s)	569
BciT130I	CCWGG	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	7 cut(s)	91, 142, 421, 424, 427, 436, 501
BlsI	GCNGC	7 cut(s)	92, 143, 422, 425, 428, 437, 502
Bme1390I	CCNGG	2 cut(s)	276, 395
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	2 cut(s)	430, 623
BmrFI	CCNGG	2 cut(s)	276, 395
Bpu10I	CCTNAGC	2 cut(s)	108, 504
BpuMI	CCSGG	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	238, 393
BsaWI	WCCGGW	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse118I	RCCGGY	2 cut(s)	116, 431
Bse1I	ACTGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	547
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	238, 393
BseGI	GGATG	2 cut(s)	493, 543
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMI	GCAATG	1 cut(s)	547
BseMII	CTCAG	3 cut(s)	158, 189, 495
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	3 cut(s)	59, 361, 364
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	5 cut(s)	128, 410, 432, 447, 512
BseYI	CCCAGC	1 cut(s)	594
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	90
BshNI	GGYRCC	2 cut(s)	428, 621
BshTI	ACCGGT	1 cut(s)	116
BsiSI	CCGG	3 cut(s)	117, 395, 432
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmAI	GTCTC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	90
Bso31I	GGTCTC	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	173, 624
BspACI	CCGC	4 cut(s)	91, 186, 263, 426
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	3 cut(s)	159, 190, 496
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	430, 623
BspMAI	CTGCAG	1 cut(s)	146
BspT107I	GGYRCC	2 cut(s)	428, 621
BspTNI	GGTCTC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	547
BsrFI	RCCGGY	2 cut(s)	116, 431
BsrI	ACTGG	1 cut(s)	311
BssAI	RCCGGY	2 cut(s)	116, 431
BssECI	CCNNGG	2 cut(s)	238, 393
BssT1I	CCWWGG	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	76, 442
Bst6I	CTCTTC	1 cut(s)	201
BstBAI	YACGTR	1 cut(s)	70
BstDEI	CTNAG	5 cut(s)	108, 167, 198, 408, 504
BstF5I	GGATG	2 cut(s)	493, 543
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	554
BstMAI	GTCTC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 426, 432, 435
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	2 cut(s)	274, 393
BstSFI	CTRYAG	1 cut(s)	142
BstSLI	GKGCMC	1 cut(s)	624
BstSNI	TACGTA	1 cut(s)	70
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	5 cut(s)	128, 410, 432, 447, 512
BsuRI	GGCC	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	493, 543
BtsIMutI	CAGTG	1 cut(s)	438
CfoI	GCGC	1 cut(s)	554
Cfr10I	RCCGGY	2 cut(s)	116, 431
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	4 cut(s)	19, 77, 272, 640
CspAI	ACCGGT	1 cut(s)	116
CviAII	CATG	3 cut(s)	80, 451, 601
CviQI	GTAC	4 cut(s)	19, 77, 272, 640
DdeI	CTNAG	5 cut(s)	108, 167, 198, 408, 504
DraI	TTTAAA	1 cut(s)	123
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
EaeI	YGGCCR	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco105I	TACGTA	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	173
Eco31I	GGTCTC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	3 cut(s)	83, 454, 604
FaiI	YATR	5 cut(s)	81, 231, 452, 582, 602
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FatI	CATG	3 cut(s)	79, 450, 600
FauI	CCCGC	1 cut(s)	256
Fnu4HI	GCNGC	7 cut(s)	91, 142, 421, 424, 427, 436, 501
FokI	GGATG	2 cut(s)	500, 550
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	7 cut(s)	91, 142, 421, 424, 427, 436, 501
FspBI	CTAG	1 cut(s)	62
FspI	TGCGCA	1 cut(s)	553
GlaI	GCGC	1 cut(s)	553
GluI	GCNGC	7 cut(s)	91, 142, 421, 424, 427, 436, 501
GsaI	CCCAGC	1 cut(s)	598
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	3 cut(s)	117, 395, 432
HhaI	GCGC	1 cut(s)	554
Hin1II	CATG	3 cut(s)	83, 454, 604
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	4 cut(s)	97, 398, 509, 557
HpaII	CCGG	3 cut(s)	117, 395, 432
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	36, 272
Hpy188I	TCNGA	6 cut(s)	168, 199, 224, 258, 379, 574
Hpy188III	TCNNGA	2 cut(s)	298, 629
Hpy8I	GTNNAC	2 cut(s)	36, 272
HpyCH4III	ACNGT	2 cut(s)	76, 442
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	5 cut(s)	144, 324, 420, 463, 500
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 426, 432, 435
HpyF3I	CTNAG	5 cut(s)	108, 167, 198, 408, 504
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	83, 454, 604
HspAI	GCGC	1 cut(s)	552
LpnPI	CCDG	9 cut(s)	79, 130, 232, 261, 288, 292, 408, 445, 580
Lsp1109I	GCAGC	5 cut(s)	128, 410, 432, 447, 512
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	70
MboII	GAAGA	4 cut(s)	215, 218, 291, 536
MhlI	GDGCHC	2 cut(s)	173, 624
MluCI	AATT	4 cut(s)	514, 583, 608, 646
MlyI	GAGTC	2 cut(s)	392, 566
MmeI	TCCRAC	2 cut(s)	465, 585
MseI	TTAA	2 cut(s)	122, 661
MslI	CAYNNNNRTG	1 cut(s)	84
MspA1I	CMGCKG	3 cut(s)	93, 423, 503
MspI	CCGG	3 cut(s)	117, 395, 432
MspR9I	CCNGG	2 cut(s)	276, 395
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	4 cut(s)	99, 426, 432, 435
NciI	CCSGG	1 cut(s)	395
NlaIII	CATG	3 cut(s)	83, 454, 604
NlaIV	GGNNCC	2 cut(s)	430, 623
NsbI	TGCGCA	1 cut(s)	553
NspI	RCATGY	1 cut(s)	604
PctI	GAATGC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	97, 509
PinAI	ACCGGT	1 cut(s)	116
PkrI	GCNGC	7 cut(s)	92, 143, 422, 425, 428, 437, 502
PleI	GAGTC	2 cut(s)	392, 565
PpsI	GAGTC	2 cut(s)	392, 565
Ppu21I	YACGTR	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	211
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	2 cut(s)	430, 623
PspPI	GGNCC	1 cut(s)	211
PspPPI	RGGWCCY	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	146
PvuII	CAGCTG	2 cut(s)	423, 503
RsaI	GTAC	4 cut(s)	20, 78, 273, 641
RsaNI	GTAC	4 cut(s)	19, 77, 272, 640
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	122, 661
SatI	GCNGC	7 cut(s)	91, 142, 421, 424, 427, 436, 501
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	2 cut(s)	392, 566
ScrFI	CCNGG	2 cut(s)	276, 395
SduI	GDGCHC	2 cut(s)	173, 624
SfcI	CTRYAG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	84
SnaBI	TACGTA	1 cut(s)	70
Sse9I	AATT	4 cut(s)	514, 583, 608, 646
SsiI	CCGC	4 cut(s)	91, 186, 263, 426
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	274, 393
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	76, 442
TaiI	ACGT	1 cut(s)	72
TaqII	GACCGA	1 cut(s)	557
TasI	AATT	4 cut(s)	514, 583, 608, 646
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	2 cut(s)	93, 429
TfiI	GAWTC	2 cut(s)	97, 509
Tru1I	TTAA	2 cut(s)	122, 661
Tru9I	TTAA	2 cut(s)	122, 661
TscAI	CASTG	1 cut(s)	445
TseI	GCWGC	5 cut(s)	141, 420, 423, 435, 500
TspDTI	ATGAA	2 cut(s)	218, 537
TspRI	CASTG	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	3 cut(s)	514, 608, 646
XceI	RCATGY	1 cut(s)	604
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.