Rorug07G0010600
MYB Family

Transcription factor WER-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005570
Physical Location & Seq
Reverse (-)
870769 .. 875724
4956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0010600.1

Sequence Viewer

Length: 1440 bp
ATGATCTATGTCAAAAACCGAACCTTCGATGTCAATTTCGTGGCCGGAAACGGCCGGAATCGGAAGAATCGCCGGAAAACCCCAATCTGCTACAGTGAAGTTCACGGCTCCAAATCGAGCTCCACCGGTCGAGCCACCGCAAAACACCACCCCAGGCGTGTCAAGGGAGAGAAGGCGAGCCTGATGATGTCCGGATTCCATCGTGGGGTGGCCGGAAAAGGAAGAAATTGGAGGGAGAAGAAATCGGGCCGAAGAGGAGAAAGGATCGGGGGAGAGGAGAGAGAAAAGCCGGTTGGGCATGCTGTGGCTCGACATACTGCAGAGGCTTTTACTAAGAACATGTGGATTCTCATAAGGCTAATGATGAACTATCTGACTGGACATGTAACCTTTCTGCCTGCACAGTACTCAATCAGGTTAACCGACAGATTGCTGGATGTTTTGTTGAGGCTTCCTTTATCCCTAAGCTACATTAATTTTGCTGACTTGTTTATGAGATCATCTCTAGATTCAATCATCAAGATTCTACTTGATATTGAATTAGACACCATGTGTGGAACAAATGAAGAAGGTATCCGGTTTTCCAATGTGTTTGATGAAGCAAACGAAATTACCCTGTATCGGTATGTTGATTCCTTCTGGAAGCCCACTACTCCTAAAGCTTCCGCACCAAATTACAACAGTGGTATCAAAGCCACAAATTCTAACAGATCTGAAGCAGTTCTAAGGAATAATATCAAAGTGGTAGATCAGTTTGTGTATAAACTGATCAACAAGAAGCTTGAAACAGTCCATAGTTCAGAAGATGAGTCAACTTTAAAGAAAAGAGACTTTATTTCAAGGCTTTTGGAATTGAGAGAAACTGATCCAAAGTACTTAAAAGACATGATCCTCAATTTTATTGTTGCCGGAAAAGACACAGTGGCTACCAATCTTTCGTGGTTTCTCTATGTGCTCTGCAAGCATCGCCATATACAAAAAAAGATTGCACAAGAAGTTAGAGAAGCAACAAGTCTGAATAATAGCTCAAGCATTGATGAACTTGTAGCCAGCCTTACTGAAGAAGCCCTTGACAAAATGCAATATCTCCATGCAGCTTTGACTGAGACACTCAGACTCTACCCTGCAGTACCTGTGGATGCAAAGGTTTGCTTTTCTCATGAGGAGTTTAGGCCAGAGGGATGGCTCGACCATAAAGGCCTTTTTCAGCAAGAAAGCCCTTTTAAGTTCACAGCCTTCCAGGCAGGTCCAAGAATCTGTCTAGGAAAGGAATTCGCTTATAGACAGATGAAGATATTTTCGGCTGTGCTTTTAGGCAACTACATATTCAAGATGAGTGATGAAGTAAAAGTGGTAAATTACAAGACTATGATCACCCTCCACATTGAAGGAGGCCTTTATGTGCATGCCTCGCCAAGATCGGGTCATGGAAGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

479

Amino Acids

54.76

Weight (kDa)

9.62

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 143 - 379 3e-24 Cytochrome P450
p450 PF00067 388 - 462 7e-13 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1235
AccIII TCCGGA 1 cut(s) 191
AciI CCGC 2 cut(s) 138, 666
AclWI GGATC 3 cut(s) 272, 860, 883
AcoI YGGCCR 3 cut(s) 42, 52, 210
AcsI RAATTY 2 cut(s) 700, 1271
AcuI CTGAAG 2 cut(s) 735, 1080
AdeI CACNNNGTG 1 cut(s) 552
AfaI GTAC 3 cut(s) 407, 875, 1131
AfiI CCNNNNNNNGG 3 cut(s) 205, 621, 1421
AflIII ACRYGT 2 cut(s) 339, 382
AgeI ACCGGT 1 cut(s) 125
AgsI TTSAA 6 cut(s) 513, 539, 785, 840, 1330, 1388
AjnI CCWGG 2 cut(s) 152, 1239
AjuI GAANNNNNNNTTGG 2 cut(s) 276, 308
AluBI AGCT 7 cut(s) 120, 468, 662, 781, 1026, 1097, 1436
AluI AGCT 7 cut(s) 120, 468, 662, 781, 1026, 1097, 1436
Alw21I GWGCWC 2 cut(s) 122, 957
Alw26I GTCTC 2 cut(s) 822, 1100
AlwI GGATC 3 cut(s) 272, 860, 883
AlwNI CAGNNNCTG 1 cut(s) 1133
Aor13HI TCCGGA 1 cut(s) 191
AoxI GGCC 7 cut(s) 42, 52, 210, 247, 1172, 1198, 1393
ApeKI GCWGC 1 cut(s) 1094
ApoI RAATTY 2 cut(s) 700, 1271
AseI ATTAAT 1 cut(s) 474
AsiGI ACCGGT 1 cut(s) 125
Asp700I GAANNNNTTC 1 cut(s) 720
AspS9I GGNCC 2 cut(s) 247, 1247
AsuHPI GGTGA 1 cut(s) 1366
AvaII GGWCC 1 cut(s) 1247
BaeI ACNNNNGTAYC 2 cut(s) 670, 703
BanII GRGCYC 1 cut(s) 122
Bbv12I GWGCWC 2 cut(s) 122, 957
BbvI GCAGC 1 cut(s) 1106
BccI CCATC 2 cut(s) 207, 1176
BceAI ACGGC 2 cut(s) 67, 121
BciT130I CCWGG 2 cut(s) 154, 1241
BciVI GTATCC 1 cut(s) 584
BclI TGATCA 2 cut(s) 768, 1371
BcoDI GTCTC 2 cut(s) 822, 1100
BfaI CTAG 2 cut(s) 506, 1262
BfmI CTRYAG 3 cut(s) 91, 318, 1125
BfuAI ACCTGC 1 cut(s) 1235
BfuI GTATCC 1 cut(s) 584
BglI GCCNNNNNGGC 2 cut(s) 295, 1241
BglII AGATCT 1 cut(s) 710
BisI GCNGC 1 cut(s) 1095
BlsI GCNGC 1 cut(s) 1096
BmcAI AGTACT 2 cut(s) 407, 875
Bme1390I CCNGG 2 cut(s) 154, 1241
Bme18I GGWCC 1 cut(s) 1247
BmgT120I GGNCC 2 cut(s) 247, 1247
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 2 cut(s) 154, 1241
BmsI GCATC 2 cut(s) 973, 1129
BplI GAGNNNNNCTC 2 cut(s) 487, 519
Bpu10I CCTNAGC 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 1012
BsaJI CCNNGG 1 cut(s) 152
BsaWI WCCGGW 3 cut(s) 125, 191, 576
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 621, 1421
Bse118I RCCGGY 2 cut(s) 125, 289
Bse1I ACTGG 1 cut(s) 382
BseAI TCCGGA 1 cut(s) 191
BseBI CCWGG 2 cut(s) 154, 1241
BseDI CCNNGG 1 cut(s) 152
BseGI GGATG 3 cut(s) 442, 1144, 1187
BseLI CCNNNNNNNGG 3 cut(s) 205, 621, 1421
BseMII CTCAG 2 cut(s) 1095, 1126
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 3 cut(s) 270, 290, 1178
BseX3I CGGCCG 1 cut(s) 52
BseXI GCAGC 1 cut(s) 1106
BsgI GTGCAG 1 cut(s) 384
Bsh1285I CGRYCG 2 cut(s) 55, 130
BshFI GGCC 7 cut(s) 44, 54, 212, 249, 1174, 1200, 1395
BshTI ACCGGT 1 cut(s) 125
BsiEI CGRYCG 2 cut(s) 55, 130
BsiHKAI GWGCWC 2 cut(s) 122, 957
BsiSI CCGG 9 cut(s) 45, 55, 73, 126, 192, 213, 290, 577, 909
BslI CCNNNNNNNGG 3 cut(s) 205, 621, 1421
BsmAI GTCTC 2 cut(s) 822, 1100
BsnI GGCC 7 cut(s) 44, 54, 212, 249, 1174, 1200, 1395
Bsp1286I GDGCHC 2 cut(s) 122, 957
Bsp13I TCCGGA 1 cut(s) 191
BspACI CCGC 2 cut(s) 138, 666
BspANI GGCC 7 cut(s) 44, 54, 212, 249, 1174, 1200, 1395
BspCNI CTCAG 2 cut(s) 1096, 1125
BspEI TCCGGA 1 cut(s) 191
BspHI TCATGA 1 cut(s) 1159
BspLI GGNNCC 1 cut(s) 109
BspMAI CTGCAG 2 cut(s) 322, 1129
BspMI ACCTGC 1 cut(s) 1235
BspPI GGATC 3 cut(s) 272, 860, 883
BspQI GCTCTTC 1 cut(s) 1426
BsrFI RCCGGY 2 cut(s) 125, 289
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 2 cut(s) 125, 289
BssECI CCNNGG 1 cut(s) 152
Bst2UI CCWGG 2 cut(s) 154, 1241
Bst4CI ACNGT 5 cut(s) 95, 405, 683, 790, 922
Bst6I CTCTTC 2 cut(s) 247, 1426
BstC8I GCNNGC 6 cut(s) 178, 300, 399, 962, 1051, 1407
BstDEI CTNAG 6 cut(s) 333, 464, 725, 1104, 1112, 1437
BstF5I GGATG 3 cut(s) 442, 1144, 1187
BstMAI GTCTC 2 cut(s) 822, 1100
BstMCI CGRYCG 2 cut(s) 55, 130
BstMWI GCNNNNNNNGC 5 cut(s) 295, 961, 966, 1241, 1411
BstNI CCWGG 2 cut(s) 154, 1241
BstNSI RCATGY 4 cut(s) 302, 343, 386, 1409
BstSCI CCNGG 2 cut(s) 152, 1239
BstSFI CTRYAG 3 cut(s) 91, 318, 1125
BstV1I GCAGC 1 cut(s) 1106
BstX2I RGATCY 1 cut(s) 710
BstXI CCANNNNNNTGG 1 cut(s) 1182
BstYI RGATCY 1 cut(s) 710
BstZI CGGCCG 1 cut(s) 52
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 7 cut(s) 44, 54, 212, 249, 1174, 1200, 1395
BtgZI GCGATG 1 cut(s) 950
BtsCI GGATG 3 cut(s) 442, 1144, 1187
BtsIMutI CAGTG 3 cut(s) 100, 688, 927
BveI ACCTGC 1 cut(s) 1235
Cac8I GCNNGC 6 cut(s) 178, 300, 399, 962, 1051, 1407
CaiI CAGNNNCTG 1 cut(s) 1133
CciI TCATGA 1 cut(s) 1159
Cfr10I RCCGGY 2 cut(s) 125, 289
Cfr13I GGNCC 2 cut(s) 247, 1247
Csp6I GTAC 3 cut(s) 406, 874, 1130
CspAI ACCGGT 1 cut(s) 125
CviAII CATG 9 cut(s) 299, 340, 383, 550, 886, 1091, 1160, 1406, 1427
CviQI GTAC 3 cut(s) 406, 874, 1130
DdeI CTNAG 6 cut(s) 333, 464, 725, 1104, 1112, 1437
DraI TTTAAA 1 cut(s) 819
DraIII CACNNNGTG 1 cut(s) 552
EaeI YGGCCR 3 cut(s) 42, 52, 210
EagI CGGCCG 1 cut(s) 52
Eam1104I CTCTTC 2 cut(s) 247, 1426
EarI CTCTTC 2 cut(s) 247, 1426
Ecl136II GAGCTC 1 cut(s) 120
EclXI CGGCCG 1 cut(s) 52
Eco147I AGGCCT 2 cut(s) 1200, 1395
Eco24I GRGCYC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 1247
Eco52I CGGCCG 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 120
Eco57I CTGAAG 2 cut(s) 735, 1080
EcoICRI GAGCTC 1 cut(s) 120
EcoRI GAATTC 1 cut(s) 1271
EcoRII CCWGG 2 cut(s) 152, 1239
EcoT38I GRGCYC 1 cut(s) 122
FaeI CATG 9 cut(s) 302, 343, 386, 553, 889, 1094, 1163, 1409, 1430
FalI AAGNNNNNCTT 6 cut(s) 1053, 1085, 1136, 1168, 1380, 1412
FatI CATG 9 cut(s) 298, 339, 382, 549, 885, 1090, 1159, 1405, 1426
FbaI TGATCA 2 cut(s) 768, 1371
Fnu4HI GCNGC 1 cut(s) 1095
FokI GGATG 3 cut(s) 449, 1151, 1194
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 1095
FspBI CTAG 2 cut(s) 506, 1262
GluI GCNGC 1 cut(s) 1095
HaeIII GGCC 7 cut(s) 44, 54, 212, 249, 1174, 1200, 1395
HapII CCGG 9 cut(s) 45, 55, 73, 126, 192, 213, 290, 577, 909
Hin1II CATG 9 cut(s) 302, 343, 386, 553, 889, 1094, 1163, 1409, 1430
HincII GTYRAC 2 cut(s) 420, 813
HindII GTYRAC 2 cut(s) 420, 813
HindIII AAGCTT 2 cut(s) 660, 779
HpaI GTTAAC 1 cut(s) 420
HpaII CCGG 9 cut(s) 45, 55, 73, 126, 192, 213, 290, 577, 909
HphI GGTGA 1 cut(s) 1366
Hpy166II GTNNAC 4 cut(s) 103, 420, 813, 1230
Hpy188I TCNGA 6 cut(s) 63, 375, 715, 802, 1017, 1115
Hpy188III TCNNGA 6 cut(s) 192, 506, 520, 640, 1160, 1330
Hpy8I GTNNAC 4 cut(s) 103, 420, 813, 1230
HpyAV CCTTC 6 cut(s) 34, 166, 563, 646, 1246, 1382
HpyCH4III ACNGT 5 cut(s) 95, 405, 683, 790, 922
HpyCH4V TGCA 9 cut(s) 320, 401, 960, 989, 1081, 1094, 1127, 1142, 1405
HpyF10VI GCNNNNNNNGC 5 cut(s) 295, 961, 966, 1241, 1411
HpyF3I CTNAG 6 cut(s) 333, 464, 725, 1104, 1112, 1437
Hsp92II CATG 9 cut(s) 302, 343, 386, 553, 889, 1094, 1163, 1409, 1430
Kpn2I TCCGGA 1 cut(s) 191
Ksp22I TGATCA 2 cut(s) 768, 1371
KspAI GTTAAC 1 cut(s) 420
LguI GCTCTTC 1 cut(s) 1426
LmnI GCTCC 2 cut(s) 113, 125
Lsp1109I GCAGC 1 cut(s) 1106
LweI GCATC 2 cut(s) 973, 1129
MaeI CTAG 2 cut(s) 506, 1262
MaeIII GTNAC 1 cut(s) 385
MboII GAAGA 8 cut(s) 76, 234, 250, 264, 578, 815, 1073, 1303
MflI RGATCY 1 cut(s) 710
MhlI GDGCHC 2 cut(s) 122, 957
MlyI GAGTC 2 cut(s) 818, 1110
MroI TCCGGA 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 720
MseI TTAA 5 cut(s) 419, 474, 818, 878, 1224
MspI CCGG 9 cut(s) 45, 55, 73, 126, 192, 213, 290, 577, 909
MspR9I CCNGG 2 cut(s) 154, 1241
MvaI CCWGG 2 cut(s) 154, 1241
MwoI GCNNNNNNNGC 5 cut(s) 295, 961, 966, 1241, 1411
NlaIII CATG 9 cut(s) 302, 343, 386, 553, 889, 1094, 1163, 1409, 1430
NlaIV GGNNCC 1 cut(s) 109
NspI RCATGY 4 cut(s) 302, 343, 386, 1409
PaeI GCATGC 2 cut(s) 302, 1409
PagI TCATGA 1 cut(s) 1159
PceI AGGCCT 2 cut(s) 1200, 1395
PciI ACATGT 2 cut(s) 339, 382
PciSI GCTCTTC 1 cut(s) 1426
PdmI GAANNNNTTC 1 cut(s) 720
PfeI GAWTC 8 cut(s) 58, 67, 195, 346, 509, 523, 632, 1254
PinAI ACCGGT 1 cut(s) 125
PkrI GCNGC 1 cut(s) 1096
PleI GAGTC 2 cut(s) 817, 1110
PpsI GAGTC 2 cut(s) 817, 1110
PscI ACATGT 2 cut(s) 339, 382
PshBI ATTAAT 1 cut(s) 474
Psp124BI GAGCTC 1 cut(s) 122
Psp6I CCWGG 2 cut(s) 152, 1239
PspGI CCWGG 2 cut(s) 152, 1239
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 2 cut(s) 247, 1247
PstI CTGCAG 2 cut(s) 322, 1129
PstNI CAGNNNCTG 1 cut(s) 1133
PsuI RGATCY 1 cut(s) 710
RsaI GTAC 3 cut(s) 407, 875, 1131
RsaNI GTAC 3 cut(s) 406, 874, 1130
SacI GAGCTC 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 1426
SaqAI TTAA 5 cut(s) 419, 474, 818, 878, 1224
SatI GCNGC 1 cut(s) 1095
Sau96I GGNCC 2 cut(s) 247, 1247
ScaI AGTACT 2 cut(s) 407, 875
SchI GAGTC 2 cut(s) 818, 1110
ScrFI CCNGG 2 cut(s) 154, 1241
SduI GDGCHC 2 cut(s) 122, 957
SfaNI GCATC 2 cut(s) 973, 1129
SfcI CTRYAG 3 cut(s) 91, 318, 1125
SinI GGWCC 1 cut(s) 1247
SmlI CTYRAG 1 cut(s) 1027
SmoI CTYRAG 1 cut(s) 1027
SphI GCATGC 2 cut(s) 302, 1409
SseBI AGGCCT 2 cut(s) 1200, 1395
SsiI CCGC 2 cut(s) 138, 666
SspMI CTAG 2 cut(s) 506, 1262
SstI GAGCTC 1 cut(s) 122
StuI AGGCCT 2 cut(s) 1200, 1395
StyD4I CCNGG 2 cut(s) 152, 1239
TaaI ACNGT 5 cut(s) 95, 405, 683, 790, 922
TaqI TCGA 5 cut(s) 27, 116, 130, 310, 1188
TatI WGTACW 2 cut(s) 405, 873
TfiI GAWTC 8 cut(s) 58, 67, 195, 346, 509, 523, 632, 1254
Tru1I TTAA 5 cut(s) 419, 474, 818, 878, 1224
Tru9I TTAA 5 cut(s) 419, 474, 818, 878, 1224
TscAI CASTG 3 cut(s) 100, 688, 927
TseI GCWGC 1 cut(s) 1094
TspDTI ATGAA 6 cut(s) 380, 579, 612, 1053, 1304, 1356
TspRI CASTG 3 cut(s) 100, 688, 927
VpaK11BI GGWCC 1 cut(s) 1247
VspI ATTAAT 1 cut(s) 474
XapI RAATTY 2 cut(s) 700, 1271
XbaI TCTAGA 1 cut(s) 505
XceI RCATGY 4 cut(s) 302, 343, 386, 1409
XmnI GAANNNNTTC 1 cut(s) 720
XspI CTAG 2 cut(s) 506, 1262
ZrmI AGTACT 2 cut(s) 407, 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.