Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0005570

Physical Location & Seq

Genomic Coordinates Reverse (-)

27390064 .. 27391046

Gene Structure 983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1181000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGAAGGTGGGAATGAGTCTAAGAAAGGTCTTTGGACAGTGGAGGAGGACAGAATTCTGACGGATTACATCAGGGTGCATGGCAAAGGCAAGTGGAATCGTGTCAATAAAGTCACAGGATTGAAGAGGAGCGGCAAAAGTTGCAGATTAAGGTGGATGAATTATCTAAGTCCCAGCGTGAAGAGAAGTGACTTCTCGGAGGAAGAAGATGATCTCATCATTCGACTCCATAACCTCATTGGCAACAGGTTCGTCCATAACCTAGCTCTTTCATCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

94

Amino Acids

10.82

Weight (kDa)

9.77

Isoelectric Point (pI)

68.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	9 - 56	3.9e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	12 - 71	1.2e-14	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27920 AT5G14750 AT5G14750 AT5G14750 AT5G14750 AT5G40330
fragaria_vesca	FvH4_5g05280 FvH4_5g05280 FvH4_5g05280
malus_domestica	MD06G1174200.v1.1 MD13G1092300.v1.1 MD13G1092400.v1.1 MD14G1180700.v1.1 MD14G1180900.v1.1 MD14G1181000.v1.1 MD16G1093200.v1.1
prunus_persica	Prupe.1G253400_v2.0.a1 Prupe.5G174200_v2.0.a1
pyrus_communis	pycom06g15550 pycom13g08020 pycom14g15080
rosa_chinensis	RchiOBHm_Chr7g0193591
rosa_laevigata	RLG00000004258
rosa_roxburghii	Rroxscaffold_3G00261980
rosa_rugosa	Rorug07G0010600
rosa_samantha	Rh7AG137400 Rh7BG137600
rosa_wichuraiana	Rw7G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	132
AciI	CCGC	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	54
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BfaI	CTAG	1 cut(s)	263
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
BseGI	GGATG	1 cut(s)	162
BseRI	GAGGAG	2 cut(s)	59, 142
BseYI	CCCAGC	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	1 cut(s)	132
BsrBI	CCGCTC	1 cut(s)	132
BssMI	GATC	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	2 cut(s)	119, 176
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	21, 167
BstF5I	GGATG	1 cut(s)	162
BstKTI	GATC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	45
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	1 cut(s)	266
CviKI_1	RGCY	1 cut(s)	266
DdeI	CTNAG	2 cut(s)	21, 167
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
Eam1104I	CTCTTC	2 cut(s)	119, 176
EarI	CTCTTC	2 cut(s)	119, 176
EcoRI	GAATTC	1 cut(s)	54
FaeI	CATG	1 cut(s)	83
FaiI	YATR	3 cut(s)	81, 231, 258
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	133
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	133
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	1 cut(s)	133
GsaI	CCCAGC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	83
HinfI	GANTC	3 cut(s)	17, 97, 225
Hpy188I	TCNGA	2 cut(s)	60, 199
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	2 cut(s)	79, 144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	2 cut(s)	21, 167
Hsp92II	CATG	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	4 cut(s)	58, 102, 187, 232
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	112, 188
MalI	GATC	1 cut(s)	213
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	1 cut(s)	211
MboII	GAAGA	4 cut(s)	136, 193, 215, 218
MluCI	AATT	2 cut(s)	54, 160
MlyI	GAGTC	2 cut(s)	26, 219
MnlI	CCTC	5 cut(s)	37, 40, 120, 193, 245
MseI	TTAA	1 cut(s)	149
MslI	CAYNNNNRTG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	141
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	1 cut(s)	83
NmuCI	GTSAC	2 cut(s)	112, 188
PfeI	GAWTC	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	134
PleI	GAGTC	2 cut(s)	25, 219
PpsI	GAGTC	2 cut(s)	25, 219
PspFI	CCCAGC	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	1 cut(s)	133
Sau3AI	GATC	1 cut(s)	211
SchI	GAGTC	2 cut(s)	26, 219
SetI	ASST	7 cut(s)	10, 31, 155, 237, 251, 264, 268
SmiMI	CAYNNNNRTG	1 cut(s)	74
Sse9I	AATT	2 cut(s)	54, 160
SsiI	CCGC	1 cut(s)	132
SspMI	CTAG	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	223
TasI	AATT	2 cut(s)	54, 160
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	2 cut(s)	112, 188
Tsp45I	GTSAC	2 cut(s)	112, 188
TspDTI	ATGAA	2 cut(s)	173, 261
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	45
XapI	RAATTY	1 cut(s)	54
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.