AT5G40330
MYB Family

myb domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005570
Physical Location & Seq
Forward (+)
16127725 .. 16129661
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40330.1

Sequence Viewer

Length: 660 bp
ATGAGAATGACAAGAGATGGAAAAGAACATGAATACAAGAAAGGTTTATGGACAGTGGAAGAAGACAAGATCCTCATGGATTATGTCCGAACTCATGGCCAGGGCCACTGGAACCGCATCGCCAAGAAAACTGGGCTCAAGAGATGTGGGAAAAGCTGTAGGTTGAGATGGATGAACTACTTAAGCCCTAATGTTAACAGAGGCAATTTTACTGACCAAGAAGAAGATCTCATCATCAGACTCCACAAGCTCCTCGGCAACAGATGGTCGTTGATAGCGAAAAGAGTTCCGGGAAGAACAGACAACCAAGTAAAGAATTACTGGAACACACATCTCAGCAAGAAACTTGGTCTCGGAGATCATTCAACTGCCGTCAAAGCCGCATGCGGTGTAGAGTCTCCACCGTCTATGGCCCTTATAACCACAACGTCCTCCTCTCATCAAGAGATCTCCGGTGGAAAAAATTCAACTCTAAGGTTCGACACTTTAGTTGACGAATCCAAACTCAAACCAAAATCCAAACTAGTCCACGCAACACCAACTGACGTAGAAGTTGCAGCTACGGTTCCAAATCTGTTCGATACCTTTTGGGTTCTTGAAGACGACTTCGAGCTTAGTTCACTCACTATGATGGATTTTACTAATGGGTATTGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001708 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010026 GO:0010033 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010769 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022603 GO:0022604 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0032989 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045165 GO:0045168 GO:0045595 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048629 GO:0048731 GO:0048764 GO:0048765 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060284 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

219

Amino Acids

24.94

Weight (kDa)

9.11

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 4.3e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 2.8e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.9e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 115 1.8e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 419
AciI CCGC 3 cut(s) 115, 381, 387
AclWI GGATC 1 cut(s) 64
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 463
AflII CTTAAG 1 cut(s) 181
AgsI TTSAA 3 cut(s) 366, 468, 599
AhlI ACTAGT 1 cut(s) 523
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 4 cut(s) 156, 250, 560, 613
AluI AGCT 4 cut(s) 156, 250, 560, 613
Alw26I GTCTC 2 cut(s) 356, 402
AlwI GGATC 1 cut(s) 64
AoxI GGCC 3 cut(s) 97, 103, 411
ApeKI GCWGC 1 cut(s) 557
ApoI RAATTY 1 cut(s) 463
Asp700I GAANNNNTTC 1 cut(s) 463
AspS9I GGNCC 2 cut(s) 103, 412
AsuC2I CCSGG 1 cut(s) 291
BalI TGGCCA 1 cut(s) 99
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 2 cut(s) 69, 606
BbvI GCAGC 1 cut(s) 569
BccI CCATC 4 cut(s) 11, 162, 258, 625
BceAI ACGGC 1 cut(s) 356
BciT130I CCWGG 1 cut(s) 101
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 2 cut(s) 356, 402
BcuI ACTAGT 1 cut(s) 523
BfaI CTAG 1 cut(s) 524
BfmI CTRYAG 1 cut(s) 157
BfrI CTTAAG 1 cut(s) 181
BglII AGATCT 2 cut(s) 226, 447
BisI GCNGC 2 cut(s) 381, 558
BlsI GCNGC 2 cut(s) 382, 559
Bme1390I CCNGG 2 cut(s) 101, 291
BmgT120I GGNCC 2 cut(s) 103, 412
BmiI GGNNCC 2 cut(s) 113, 567
BmrFI CCNGG 2 cut(s) 101, 291
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 141
BpiI GAAGAC 2 cut(s) 69, 606
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 100, 253
BsaWI WCCGGW 1 cut(s) 452
Bse1I ACTGG 3 cut(s) 113, 136, 326
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 100, 253
BseGI GGATG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 349
BseNI ACTGG 3 cut(s) 113, 136, 326
BseRI GAGGAG 2 cut(s) 242, 424
BseXI GCAGC 1 cut(s) 569
BshFI GGCC 3 cut(s) 99, 105, 413
BsiSI CCGG 2 cut(s) 290, 453
BsmAI GTCTC 2 cut(s) 356, 402
BsnI GGCC 3 cut(s) 99, 105, 413
Bso31I GGTCTC 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 4 cut(s) 69, 226, 358, 447
BspACI CCGC 3 cut(s) 115, 381, 387
BspANI GGCC 3 cut(s) 99, 105, 413
BspCNI CTCAG 1 cut(s) 348
BspLI GGNNCC 2 cut(s) 113, 567
BspPI GGATC 1 cut(s) 64
BspTI CTTAAG 1 cut(s) 181
BspTNI GGTCTC 1 cut(s) 356
BsrI ACTGG 3 cut(s) 113, 136, 326
BssECI CCNNGG 2 cut(s) 100, 253
BssMI GATC 4 cut(s) 69, 226, 358, 447
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 3 cut(s) 55, 405, 565
BstAFI CTTAAG 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 3 cut(s) 335, 473, 614
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 4 cut(s) 72, 229, 361, 450
BstMAI GTCTC 2 cut(s) 356, 402
BstMBI GATC 4 cut(s) 69, 226, 358, 447
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstNI CCWGG 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 387
BstSCI CCNGG 2 cut(s) 99, 289
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 569
BstV2I GAAGAC 2 cut(s) 69, 606
BstX2I RGATCY 3 cut(s) 69, 226, 447
BstYI RGATCY 3 cut(s) 69, 226, 447
BsuRI GGCC 3 cut(s) 99, 105, 413
BtgZI GCGATG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 177
BtsIMutI CAGTG 2 cut(s) 60, 106
Cac8I GCNNGC 1 cut(s) 385
Cfr13I GGNCC 2 cut(s) 103, 412
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviAII CATG 4 cut(s) 29, 76, 95, 384
DdeI CTNAG 3 cut(s) 335, 473, 614
DpnI GATC 4 cut(s) 71, 228, 360, 449
DpnII GATC 4 cut(s) 69, 226, 358, 447
EaeI YGGCCR 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 138
FaeI CATG 4 cut(s) 32, 79, 98, 387
FaiI YATR 9 cut(s) 30, 49, 77, 84, 96, 385, 410, 419, 629
FatI CATG 4 cut(s) 28, 75, 94, 383
Fnu4HI GCNGC 2 cut(s) 381, 558
FokI GGATG 1 cut(s) 184
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 2 cut(s) 381, 558
FspBI CTAG 1 cut(s) 524
GluI GCNGC 2 cut(s) 381, 558
HaeIII GGCC 3 cut(s) 99, 105, 413
HapII CCGG 2 cut(s) 290, 453
Hin1II CATG 4 cut(s) 32, 79, 98, 387
HincII GTYRAC 2 cut(s) 196, 493
HindII GTYRAC 2 cut(s) 196, 493
HinfI GANTC 3 cut(s) 240, 395, 497
HpaI GTTAAC 1 cut(s) 196
HpaII CCGG 2 cut(s) 290, 453
Hpy166II GTNNAC 4 cut(s) 196, 493, 529, 620
Hpy188I TCNGA 3 cut(s) 89, 239, 356
Hpy188III TCNNGA 3 cut(s) 139, 443, 596
Hpy8I GTNNAC 4 cut(s) 196, 493, 529, 620
HpyCH4III ACNGT 3 cut(s) 55, 405, 565
HpyCH4IV ACGT 2 cut(s) 428, 546
HpyCH4V TGCA 1 cut(s) 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 3 cut(s) 335, 473, 614
HpySE526I ACGT 2 cut(s) 428, 546
Hsp92II CATG 4 cut(s) 32, 79, 98, 387
KspAI GTTAAC 1 cut(s) 196
Kzo9I GATC 4 cut(s) 69, 226, 358, 447
LmnI GCTCC 1 cut(s) 255
LpnPI CCDG 7 cut(s) 86, 94, 113, 117, 303, 307, 466
Lsp1109I GCAGC 1 cut(s) 569
LweI GCATC 1 cut(s) 126
MaeI CTAG 1 cut(s) 524
MaeII ACGT 2 cut(s) 428, 546
MalI GATC 4 cut(s) 71, 228, 360, 449
MboI GATC 4 cut(s) 69, 226, 358, 447
MboII GAAGA 6 cut(s) 71, 74, 233, 236, 306, 611
MflI RGATCY 3 cut(s) 69, 226, 447
MhlI GDGCHC 1 cut(s) 138
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 3 cut(s) 205, 316, 463
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 2 cut(s) 234, 404
MnlI CCTC 5 cut(s) 83, 194, 263, 442, 445
Mox20I TGGCCA 1 cut(s) 99
MroXI GAANNNNTTC 1 cut(s) 463
MscI TGGCCA 1 cut(s) 99
MseI TTAA 2 cut(s) 182, 195
MslI CAYNNNNRTG 1 cut(s) 629
Msp20I TGGCCA 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 181
MspI CCGG 2 cut(s) 290, 453
MspR9I CCNGG 2 cut(s) 101, 291
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 377
NciI CCSGG 1 cut(s) 291
NdeII GATC 4 cut(s) 69, 226, 358, 447
NlaIII CATG 4 cut(s) 32, 79, 98, 387
NlaIV GGNNCC 2 cut(s) 113, 567
NmeAIII GCCGAG 1 cut(s) 234
NspI RCATGY 1 cut(s) 387
PaeI GCATGC 1 cut(s) 387
PcsI WCGNNNNNNNCGW 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 463
PfeI GAWTC 1 cut(s) 497
PfoI TCCNGGA 1 cut(s) 289
PkrI GCNGC 2 cut(s) 382, 559
PleI GAGTC 2 cut(s) 234, 403
PpsI GAGTC 2 cut(s) 234, 403
PsiI TTATAA 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 113, 567
PspPI GGNCC 2 cut(s) 103, 412
PsuI RGATCY 3 cut(s) 69, 226, 447
RseI CAYNNNNRTG 1 cut(s) 629
SaqAI TTAA 2 cut(s) 182, 195
SatI GCNGC 2 cut(s) 381, 558
Sau3AI GATC 4 cut(s) 69, 226, 358, 447
Sau96I GGNCC 2 cut(s) 103, 412
SchI GAGTC 2 cut(s) 234, 404
ScrFI CCNGG 2 cut(s) 101, 291
SduI GDGCHC 1 cut(s) 138
SfaNI GCATC 1 cut(s) 126
SfcI CTRYAG 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 629
SmlI CTYRAG 2 cut(s) 137, 181
SmoI CTYRAG 2 cut(s) 137, 181
SpeI ACTAGT 1 cut(s) 523
SphI GCATGC 1 cut(s) 387
Sse9I AATT 3 cut(s) 205, 316, 463
SsiI CCGC 3 cut(s) 115, 381, 387
SspMI CTAG 1 cut(s) 524
StyD4I CCNGG 2 cut(s) 99, 289
TaaI ACNGT 3 cut(s) 55, 405, 565
TaiI ACGT 2 cut(s) 431, 549
TaqI TCGA 3 cut(s) 480, 579, 609
TasI AATT 3 cut(s) 205, 316, 463
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 1 cut(s) 497
Tru1I TTAA 2 cut(s) 182, 195
Tru9I TTAA 2 cut(s) 182, 195
TscAI CASTG 2 cut(s) 60, 113
TseI GCWGC 1 cut(s) 557
TspDTI ATGAA 2 cut(s) 45, 188
TspRI CASTG 2 cut(s) 60, 113
Vha464I CTTAAG 1 cut(s) 181
XapI RAATTY 1 cut(s) 463
XceI RCATGY 1 cut(s) 387
XmnI GAANNNNTTC 1 cut(s) 463
XspI CTAG 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.