Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005570

Physical Location & Seq

Genomic Coordinates Forward (+)

6432101 .. 6433803

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1093200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAAGCAGAATATGAGTACAAGAAAGGGTTATGGACAAAGGAGGAAGATGAGATTCTGCTAGACTACAAAAGGGTACATGGAAGTGGCCGCTGGAACCGCATTCCTAAGGTTACCGGCCTGAAGAGGAATGGAAAGAGCTGCAGATTGAGGTGGCTCAACTATCTCAGCCCAGATGTGAAACGCGGCGATTTTTCTGAGCAGGAAGAAGACCTCATTATCAGACTTCATAATCTCCTTGGAAACAGGTGGTCTTTGATTGCGGGGCGTTTACCAGGAAGAACTGACAACCAAGTCAAGAACTACTGGAACGCTCATTTGAGCAAAAAGCTTGGCGACATAAAAAAGCAGCATACACCTAGAAAATTTGTTGTTTCTACGTCTAAAGCTCACTCTTGTGCTACTCAAGAACTGCCAGGAGACAAACTAGTACACCAACACAAACTGCTCAAAGCGCGGGACTCGGACTCAACTTCCGGTATGAAAAGTAATAATCAAACAGCAAATTTGGATTCTAATGAAGAAGAAAAGATAGAATGGATGGCCAAGCATTGTACCGAGTCGCTTTCTTGTTCTAATTATGATAATTTGATTAGCTGGGGCATGGTCAATATTCTGCAAGGATACCCTCTTGACTATTGTAATTATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045165 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0080090 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

218

Amino Acids

25.17

Weight (kDa)

8.97

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	9 - 56	5.8e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	12 - 70	1.9e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	62 - 107	1.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	65 - 110	1.1e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27920 AT5G14750 AT5G14750 AT5G14750 AT5G14750 AT5G40330
fragaria_vesca	FvH4_5g05280 FvH4_5g05280 FvH4_5g05280
malus_domestica	MD06G1174200.v1.1 MD13G1092300.v1.1 MD13G1092400.v1.1 MD14G1180700.v1.1 MD14G1180900.v1.1 MD14G1181000.v1.1 MD16G1093200.v1.1
prunus_persica	Prupe.1G253400_v2.0.a1 Prupe.5G174200_v2.0.a1
pyrus_communis	pycom06g15550 pycom13g08020 pycom14g15080
rosa_chinensis	RchiOBHm_Chr7g0193591
rosa_laevigata	RLG00000004258
rosa_roxburghii	Rroxscaffold_3G00261980
rosa_rugosa	Rorug07G0010600
rosa_samantha	Rh7AG137400 Rh7BG137600
rosa_wichuraiana	Rw7G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	648
AasI	GACNNNNNNGTC	1 cut(s)	293
AccII	CGCG	2 cut(s)	186, 457
AciI	CCGC	5 cut(s)	91, 100, 186, 263, 457
AcoI	YGGCCR	2 cut(s)	88, 543
AcsI	RAATTY	2 cut(s)	365, 505
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	4 cut(s)	20, 78, 432, 556
AhlI	ACTAGT	1 cut(s)	427
AjnI	CCWGG	2 cut(s)	274, 415
AleI	CACNNNNGTG	1 cut(s)	396
AluBI	AGCT	4 cut(s)	141, 331, 389, 597
AluI	AGCT	4 cut(s)	141, 331, 389, 597
Alw26I	GTCTC	1 cut(s)	414
AoxI	GGCC	3 cut(s)	88, 118, 543
ApeKI	GCWGC	2 cut(s)	141, 349
ApoI	RAATTY	2 cut(s)	365, 505
AspLEI	GCGC	1 cut(s)	457
AxyI	CCTNAGG	1 cut(s)	108
BalI	TGGCCA	1 cut(s)	545
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	128, 361
BccI	CCATC	1 cut(s)	535
BciT130I	CCWGG	2 cut(s)	276, 417
BciVI	GTATCC	1 cut(s)	617
BcoDI	GTCTC	1 cut(s)	414
BcuI	ACTAGT	1 cut(s)	427
BfaI	CTAG	3 cut(s)	62, 360, 428
BfmI	CTRYAG	1 cut(s)	142
BfuI	GTATCC	1 cut(s)	617
BisI	GCNGC	4 cut(s)	91, 142, 187, 350
BlsI	GCNGC	4 cut(s)	92, 143, 188, 351
Bme1390I	CCNGG	2 cut(s)	276, 417
BmiI	GGNNCC	1 cut(s)	98
BmrFI	CCNGG	2 cut(s)	276, 417
BpiI	GAAGAC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	476
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	311
Bse21I	CCTNAGG	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	276, 417
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	1 cut(s)	546
BseMII	CTCAG	2 cut(s)	181, 189
BseNI	ACTGG	1 cut(s)	311
BseXI	GCAGC	2 cut(s)	128, 361
BseYI	CCCAGC	1 cut(s)	597
Bsh1236I	CGCG	2 cut(s)	186, 457
BshFI	GGCC	3 cut(s)	90, 120, 545
BsiSI	CCGG	2 cut(s)	117, 477
BslFI	GGGAC	1 cut(s)	473
BsmAI	GTCTC	1 cut(s)	414
BsmFI	GGGAC	1 cut(s)	473
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	3 cut(s)	90, 120, 545
BspACI	CCGC	5 cut(s)	91, 100, 186, 263, 457
BspANI	GGCC	3 cut(s)	90, 120, 545
BspCNI	CTCAG	2 cut(s)	180, 190
BspFNI	CGCG	2 cut(s)	186, 457
BspLI	GGNNCC	1 cut(s)	98
BspMAI	CTGCAG	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	238
BssT1I	CCWWGG	1 cut(s)	238
Bst2UI	CCWGG	2 cut(s)	276, 417
Bst6I	CTCTTC	1 cut(s)	119
BstDEI	CTNAG	3 cut(s)	108, 167, 198
BstEII	GGTNACC	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	546
BstFNI	CGCG	2 cut(s)	186, 457
BstHHI	GCGC	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	414
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 454
BstNI	CCWGG	2 cut(s)	276, 417
BstPI	GGTNACC	1 cut(s)	112
BstSCI	CCNGG	2 cut(s)	274, 415
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	2 cut(s)	186, 457
BstV1I	GCAGC	2 cut(s)	128, 361
BstV2I	GAAGAC	1 cut(s)	216
Bsu36I	CCTNAGG	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	617
BsuRI	GGCC	3 cut(s)	90, 120, 545
BtsCI	GGATG	1 cut(s)	546
CfoI	GCGC	1 cut(s)	457
Cfr10I	RCCGGY	1 cut(s)	116
Csp6I	GTAC	4 cut(s)	19, 77, 431, 555
CviAII	CATG	2 cut(s)	80, 604
CviJI	RGCY	9 cut(s)	90, 120, 141, 157, 171, 331, 389, 545, 597
CviKI_1	RGCY	9 cut(s)	90, 120, 141, 157, 171, 331, 389, 545, 597
CviQI	GTAC	4 cut(s)	19, 77, 431, 555
DdeI	CTNAG	3 cut(s)	108, 167, 198
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
EaeI	YGGCCR	2 cut(s)	88, 543
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	143
Eco81I	CCTNAGG	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	112
EcoO65I	GGTNACC	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	274, 415
EcoT14I	CCWWGG	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	2 cut(s)	83, 607
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	2 cut(s)	79, 603
FauI	CCCGC	2 cut(s)	256, 450
Fnu4HI	GCNGC	4 cut(s)	91, 142, 187, 350
FokI	GGATG	1 cut(s)	553
Fsp4HI	GCNGC	4 cut(s)	91, 142, 187, 350
FspBI	CTAG	3 cut(s)	62, 360, 428
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	4 cut(s)	91, 142, 187, 350
GsaI	CCCAGC	1 cut(s)	601
HaeIII	GGCC	3 cut(s)	90, 120, 545
HapII	CCGG	2 cut(s)	117, 477
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	2 cut(s)	83, 607
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	5 cut(s)	55, 461, 467, 512, 560
HpaII	CCGG	2 cut(s)	117, 477
Hpy166II	GTNNAC	2 cut(s)	272, 433
Hpy188I	TCNGA	3 cut(s)	199, 224, 466
Hpy188III	TCNNGA	3 cut(s)	298, 407, 632
Hpy8I	GTNNAC	2 cut(s)	272, 433
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	2 cut(s)	144, 619
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 454
HpyF3I	CTNAG	3 cut(s)	108, 167, 198
HpySE526I	ACGT	1 cut(s)	380
Hsp92II	CATG	2 cut(s)	83, 607
HspAI	GCGC	1 cut(s)	455
Lsp1109I	GCAGC	2 cut(s)	128, 361
MaeI	CTAG	3 cut(s)	62, 360, 428
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	112
MboII	GAAGA	7 cut(s)	59, 136, 218, 221, 291, 533, 536
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	6 cut(s)	365, 505, 577, 586, 643, 649
MluNI	TGGCCA	1 cut(s)	545
MlyI	GAGTC	3 cut(s)	455, 461, 569
MnlI	CCTC	5 cut(s)	37, 120, 144, 224, 639
Mox20I	TGGCCA	1 cut(s)	545
MscI	TGGCCA	1 cut(s)	545
MseI	TTAA	1 cut(s)	652
MslI	CAYNNNNRTG	2 cut(s)	84, 396
Msp20I	TGGCCA	1 cut(s)	545
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	2 cut(s)	117, 477
MspR9I	CCNGG	2 cut(s)	276, 417
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	2 cut(s)	276, 417
MvnI	CGCG	2 cut(s)	186, 457
MwoI	GCNNNNNNNGC	2 cut(s)	99, 454
NlaIII	CATG	2 cut(s)	83, 607
NlaIV	GGNNCC	1 cut(s)	98
OliI	CACNNNNGTG	1 cut(s)	396
PctI	GAATGC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	55, 512
PkrI	GCNGC	4 cut(s)	92, 143, 188, 351
PleI	GAGTC	3 cut(s)	455, 461, 568
PpsI	GAGTC	3 cut(s)	455, 461, 568
PsiI	TTATAA	1 cut(s)	648
Psp6I	CCWGG	2 cut(s)	274, 415
PspEI	GGTNACC	1 cut(s)	112
PspFI	CCCAGC	1 cut(s)	597
PspGI	CCWGG	2 cut(s)	274, 415
PspN4I	GGNNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	146
RsaI	GTAC	4 cut(s)	20, 78, 432, 556
RsaNI	GTAC	4 cut(s)	19, 77, 431, 555
RseI	CAYNNNNRTG	2 cut(s)	84, 396
SaqAI	TTAA	1 cut(s)	652
SatI	GCNGC	4 cut(s)	91, 142, 187, 350
SchI	GAGTC	3 cut(s)	455, 461, 569
ScrFI	CCNGG	2 cut(s)	276, 417
SfcI	CTRYAG	1 cut(s)	142
SmiMI	CAYNNNNRTG	2 cut(s)	84, 396
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
SpeI	ACTAGT	1 cut(s)	427
Sse9I	AATT	6 cut(s)	365, 505, 577, 586, 643, 649
SsiI	CCGC	5 cut(s)	91, 100, 186, 263, 457
SspI	AATATT	1 cut(s)	613
SspMI	CTAG	3 cut(s)	62, 360, 428
StyD4I	CCNGG	2 cut(s)	274, 415
StyI	CCWWGG	1 cut(s)	238
TaiI	ACGT	1 cut(s)	383
TasI	AATT	6 cut(s)	365, 505, 577, 586, 643, 649
TatI	WGTACW	2 cut(s)	18, 430
TauI	GCSGC	2 cut(s)	93, 189
TfiI	GAWTC	2 cut(s)	55, 512
Tru1I	TTAA	1 cut(s)	652
Tru9I	TTAA	1 cut(s)	652
TseI	GCWGC	2 cut(s)	141, 349
TspDTI	ATGAA	3 cut(s)	218, 497, 534
XapI	RAATTY	2 cut(s)	365, 505
XspI	CTAG	3 cut(s)	62, 360, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.