RLG00000004258
MYB Family

Transcription factor WER-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005570
Physical Location & Seq
Forward (+)
57773989 .. 57775439
1451 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004258

Sequence Viewer

Length: 789 bp
ATGGAAGGTGGTGGAAGGAATCATGGATATAAGAAAGGTCTATGGACAGCGGAGGAAGACAGAGTTCTAACCGAGTATATCAAAGTCCATGGAAAAGGCAAGTGGAATCGAGTCACCAAAGTCACAGGATTGAAGAGGTGTGGGAAAAGCTGCAGATTGAGGTGGATGAACTATCTGAGCCCCACCGTGAAGCGTGGCGACTTCTCTGAGGAAGAAAACGATCTCATCATTCGCCTCCATAACCTCCTCGGAAACAGGTGGTCTCTGATAGCCGGACGGGTTCCGGGAAGAACCGACAACCAAGTAAAGAACCACTGGAATTCTCATTTGAGCAAAAAGCTCGGTGTGGTCAACAACTACAAAGGTGTAAAGAGCAAAGCCAAGACTAGAAGTCATAGTAGTAGTACTACTACTACTACTTCCTCAGACCAACAAGCAAGTAGTCCAAAAGAACAGTCCAACTCTGCAGAGATACAGCAGCAGCCACTACCTGATTCGAATAGCGACGGCTATGGTGAAGCAGCAGCACCAGCTCGCCATGGATGTGATGATGATCATGATCAGGAGATGATGATCAGCCGAGATAGTGGTGTTGGGTTCAGTGGGATGTGGGAGACGATGATGATGGGTAGCAATAACAACTGTGACCAGGGCTCCTTTTGGTTTTATAATAATAATAATCAGGATGACCTAAATCTCTACAATCCTAATTATTTCATGGACCCTAGTCTAGATCATCACCATCTTCATAACTACTCTTTCGAATTTTTTGAGGACATCGGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

263

Amino Acids

29.79

Weight (kDa)

6.86

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 12 - 59 2e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 15 - 73 1.2e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 65 - 110 1.2e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 68 - 113 2.7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
AciI CCGC 1 cut(s) 50
AcsI RAATTY 2 cut(s) 319, 764
AfaI GTAC 1 cut(s) 406
AgsI TTSAA 1 cut(s) 133
AhdI GACNNNNNGTC 1 cut(s) 390
AjnI CCWGG 1 cut(s) 648
AluBI AGCT 3 cut(s) 150, 340, 533
AluI AGCT 3 cut(s) 150, 340, 533
Alw26I GTCTC 2 cut(s) 267, 608
ApeKI GCWGC 5 cut(s) 150, 478, 481, 521, 524
ApoI RAATTY 2 cut(s) 319, 764
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AspS9I GGNCC 1 cut(s) 721
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 3 cut(s) 106, 527, 731
AsuII TTCGAA 2 cut(s) 497, 762
AvaII GGWCC 1 cut(s) 721
BanII GRGCYC 2 cut(s) 182, 656
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 5 cut(s) 137, 490, 493, 533, 536
BccI CCATC 2 cut(s) 619, 750
BceAI ACGGC 1 cut(s) 523
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BciT130I CCWGG 1 cut(s) 650
BclI TGATCA 3 cut(s) 553, 559, 573
BcnI CCSGG 1 cut(s) 285
BcoDI GTCTC 2 cut(s) 267, 608
BfaI CTAG 4 cut(s) 387, 726, 731, 787
BfmI CTRYAG 2 cut(s) 151, 465
BisI GCNGC 5 cut(s) 151, 479, 482, 522, 525
BlsI GCNGC 5 cut(s) 152, 480, 483, 523, 526
BmcAI AGTACT 1 cut(s) 406
Bme1390I CCNGG 2 cut(s) 285, 650
Bme18I GGWCC 1 cut(s) 721
BmeRI GACNNNNNGTC 1 cut(s) 390
BmgT120I GGNCC 1 cut(s) 721
BmiI GGNNCC 3 cut(s) 282, 655, 723
BmrFI CCNGG 2 cut(s) 285, 650
BoxI GACNNNNGTC 1 cut(s) 726
BpiI GAAGAC 1 cut(s) 63
Bpu14I TTCGAA 2 cut(s) 497, 762
BpuMI CCSGG 1 cut(s) 285
BsaBI GATNNNNATC 3 cut(s) 552, 558, 572
BsaI GGTCTC 1 cut(s) 267
BsaJI CCNNGG 4 cut(s) 88, 247, 538, 649
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bse1I ACTGG 1 cut(s) 320
Bse8I GATNNNNATC 3 cut(s) 552, 558, 572
BseBI CCWGG 1 cut(s) 650
BseDI CCNNGG 4 cut(s) 88, 247, 538, 649
BseGI GGATG 4 cut(s) 171, 548, 612, 691
BseJI GATNNNNATC 3 cut(s) 552, 558, 572
BseMII CTCAG 3 cut(s) 167, 198, 438
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 5 cut(s) 137, 490, 493, 533, 536
BsiSI CCGG 2 cut(s) 273, 284
BsmAI GTCTC 2 cut(s) 267, 608
BsmBI CGTCTC 1 cut(s) 608
Bso31I GGTCTC 1 cut(s) 267
Bsp119I TTCGAA 2 cut(s) 497, 762
Bsp1286I GDGCHC 2 cut(s) 182, 656
Bsp143I GATC 5 cut(s) 220, 553, 559, 573, 733
Bsp19I CCATGG 2 cut(s) 88, 538
BspACI CCGC 1 cut(s) 50
BspCNI CTCAG 3 cut(s) 168, 199, 437
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 3 cut(s) 282, 655, 723
BspMAI CTGCAG 2 cut(s) 155, 469
BspT104I TTCGAA 2 cut(s) 497, 762
BspTNI GGTCTC 1 cut(s) 267
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 4 cut(s) 88, 247, 538, 649
BssMI GATC 5 cut(s) 220, 553, 559, 573, 733
BssT1I CCWWGG 2 cut(s) 88, 538
Bst2UI CCWGG 1 cut(s) 650
Bst4CI ACNGT 3 cut(s) 187, 456, 644
Bst6I CTCTTC 1 cut(s) 128
BstBI TTCGAA 2 cut(s) 497, 762
BstC8I GCNNGC 1 cut(s) 535
BstDEI CTNAG 3 cut(s) 176, 207, 424
BstDSI CCRYGG 2 cut(s) 88, 538
BstF5I GGATG 4 cut(s) 171, 548, 612, 691
BstKTI GATC 5 cut(s) 223, 556, 562, 576, 736
BstMAI GTCTC 2 cut(s) 267, 608
BstMBI GATC 5 cut(s) 220, 553, 559, 573, 733
BstMWI GCNNNNNNNGC 1 cut(s) 530
BstNI CCWGG 1 cut(s) 650
BstPAI GACNNNNGTC 1 cut(s) 726
BstSCI CCNGG 2 cut(s) 283, 648
BstSFI CTRYAG 2 cut(s) 151, 465
BstV1I GCAGC 5 cut(s) 137, 490, 493, 533, 536
BstV2I GAAGAC 1 cut(s) 63
BtgI CCRYGG 2 cut(s) 88, 538
BtsCI GGATG 4 cut(s) 171, 548, 612, 691
BtsIMutI CAGTG 2 cut(s) 313, 607
Cac8I GCNNGC 1 cut(s) 535
CciI TCATGA 1 cut(s) 556
Cfr13I GGNCC 1 cut(s) 721
Csp6I GTAC 1 cut(s) 405
CviAII CATG 5 cut(s) 23, 89, 539, 557, 718
CviQI GTAC 1 cut(s) 405
DdeI CTNAG 3 cut(s) 176, 207, 424
DpnI GATC 5 cut(s) 222, 555, 561, 575, 735
DpnII GATC 5 cut(s) 220, 553, 559, 573, 733
DriI GACNNNNNGTC 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 128
Eam1105I GACNNNNNGTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 128
Eco130I CCWWGG 2 cut(s) 88, 538
Eco24I GRGCYC 2 cut(s) 182, 656
Eco31I GGTCTC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 721
EcoRI GAATTC 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 648
EcoT14I CCWWGG 2 cut(s) 88, 538
EcoT38I GRGCYC 2 cut(s) 182, 656
ErhI CCWWGG 2 cut(s) 88, 538
Esp3I CGTCTC 1 cut(s) 608
FaeI CATG 5 cut(s) 26, 92, 542, 560, 721
FatI CATG 5 cut(s) 22, 88, 538, 556, 717
FbaI TGATCA 3 cut(s) 553, 559, 573
Fnu4HI GCNGC 5 cut(s) 151, 479, 482, 522, 525
FokI GGATG 4 cut(s) 178, 555, 619, 698
FriOI GRGCYC 2 cut(s) 182, 656
Fsp4HI GCNGC 5 cut(s) 151, 479, 482, 522, 525
FspBI CTAG 4 cut(s) 387, 726, 731, 787
GluI GCNGC 5 cut(s) 151, 479, 482, 522, 525
HapII CCGG 2 cut(s) 273, 284
Hin1II CATG 5 cut(s) 26, 92, 542, 560, 721
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 4 cut(s) 19, 106, 111, 494
HpaII CCGG 2 cut(s) 273, 284
HphI GGTGA 3 cut(s) 106, 527, 731
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 5 cut(s) 177, 208, 251, 267, 427
Hpy188III TCNNGA 4 cut(s) 557, 563, 683, 731
Hpy8I GTNNAC 1 cut(s) 352
Hpy99I CGWCG 1 cut(s) 509
HpyAV CCTTC 1 cut(s) 9
HpyCH4III ACNGT 3 cut(s) 187, 456, 644
HpyCH4V TGCA 2 cut(s) 153, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 530
HpyF3I CTNAG 3 cut(s) 176, 207, 424
Hsp92II CATG 5 cut(s) 26, 92, 542, 560, 721
Ksp22I TGATCA 3 cut(s) 553, 559, 573
Kzo9I GATC 5 cut(s) 220, 553, 559, 573, 733
LmnI GCTCC 1 cut(s) 659
Lsp1109I GCAGC 5 cut(s) 137, 490, 493, 533, 536
MaeI CTAG 4 cut(s) 387, 726, 731, 787
MaeIII GTNAC 3 cut(s) 112, 121, 644
MalI GATC 5 cut(s) 222, 555, 561, 575, 735
MboI GATC 5 cut(s) 220, 553, 559, 573, 733
MboII GAAGA 5 cut(s) 68, 145, 224, 300, 737
MhlI GDGCHC 2 cut(s) 182, 656
MluCI AATT 3 cut(s) 319, 709, 764
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 9 cut(s) 46, 129, 153, 202, 245, 254, 257, 433, 766
MslI CAYNNNNRTG 1 cut(s) 543
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 2 cut(s) 273, 284
MspR9I CCNGG 2 cut(s) 285, 650
MvaI CCWGG 1 cut(s) 650
MwoI GCNNNNNNNGC 1 cut(s) 530
NciI CCSGG 1 cut(s) 285
NcoI CCATGG 2 cut(s) 88, 538
NdeII GATC 5 cut(s) 220, 553, 559, 573, 733
NlaIII CATG 5 cut(s) 26, 92, 542, 560, 721
NlaIV GGNNCC 3 cut(s) 282, 655, 723
NmeAIII GCCGAG 1 cut(s) 605
NmuCI GTSAC 3 cut(s) 112, 121, 644
NspV TTCGAA 2 cut(s) 497, 762
PagI TCATGA 1 cut(s) 556
PfeI GAWTC 3 cut(s) 19, 106, 494
PfoI TCCNGGA 1 cut(s) 283
PkrI GCNGC 5 cut(s) 152, 480, 483, 523, 526
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PshAI GACNNNNGTC 1 cut(s) 726
PsiI TTATAA 1 cut(s) 669
Psp6I CCWGG 1 cut(s) 648
PspGI CCWGG 1 cut(s) 648
PspN4I GGNNCC 3 cut(s) 282, 655, 723
PspPI GGNCC 1 cut(s) 721
PstI CTGCAG 2 cut(s) 155, 469
RsaI GTAC 1 cut(s) 406
RsaNI GTAC 1 cut(s) 405
RseI CAYNNNNRTG 1 cut(s) 543
SatI GCNGC 5 cut(s) 151, 479, 482, 522, 525
Sau3AI GATC 5 cut(s) 220, 553, 559, 573, 733
Sau96I GGNCC 1 cut(s) 721
ScaI AGTACT 1 cut(s) 406
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 2 cut(s) 285, 650
SduI GDGCHC 2 cut(s) 182, 656
SfcI CTRYAG 2 cut(s) 151, 465
SfuI TTCGAA 2 cut(s) 497, 762
SinI GGWCC 1 cut(s) 721
SmiMI CAYNNNNRTG 1 cut(s) 543
Sse9I AATT 3 cut(s) 319, 709, 764
SsiI CCGC 1 cut(s) 50
SspMI CTAG 4 cut(s) 387, 726, 731, 787
StyD4I CCNGG 2 cut(s) 283, 648
StyI CCWWGG 2 cut(s) 88, 538
TaaI ACNGT 3 cut(s) 187, 456, 644
TaqI TCGA 3 cut(s) 109, 497, 762
TasI AATT 3 cut(s) 319, 709, 764
TatI WGTACW 1 cut(s) 404
TfiI GAWTC 3 cut(s) 19, 106, 494
TscAI CASTG 2 cut(s) 320, 607
TseFI GTSAC 3 cut(s) 112, 121, 644
TseI GCWGC 5 cut(s) 150, 478, 481, 521, 524
Tsp45I GTSAC 3 cut(s) 112, 121, 644
TspDTI ATGAA 3 cut(s) 182, 706, 737
TspRI CASTG 2 cut(s) 320, 607
VpaK11BI GGWCC 1 cut(s) 721
XapI RAATTY 2 cut(s) 319, 764
XbaI TCTAGA 1 cut(s) 730
XspI CTAG 4 cut(s) 387, 726, 731, 787
ZrmI AGTACT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.