Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005570

Physical Location & Seq

Genomic Coordinates Forward (+)

6525645 .. 6527002

Gene Structure 1358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1092400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAAGCAGAATATGAGTACAAGAAGGGGTTATGGACAAAGGAGGAGGATGAGATTCTCCTGGACTACATAAGGGTACATGGAAGAGGCCGCTGGAACCGCATTCCCAAGGTCACCGGCTTAAGGAGGAGCGGTAAGAGCTGCAGGTTGAGGTGGCTCAACCATCTCAGCCCAAATGTGAAGCGCGGGGATTTTTCTGAGGAAGAAGAAGACCTCATTATCAGACTTCACAATCTCCTTGGAAACAGGTGGTCTCTGATTGCGGGGCGTGTACCAGGAAGAACCGACAACCAAGTAAAGAACTACTGGAACACTCATTTGTACAAAAAGCTTAACGCCATAAAAAAGCAGCAGACATCTGGAAAAGTTGCTGTTGTTTCGACGTCGAAAACAACTACTCACAGCTCTTCTGCTGCTCAAGAACTGGCAGGAGACAAACTAGTACACCAACACAAAATGCTCAAGGCGCCGGACTCGGACTCAAATTCCGTCACGAAGAGTAATGATCAAAACCCAAATATGGATATTGTTGCAGCTGAGGATTCTAATGCAGAAGAAGAAGAGATAGAATGGATGGCCAAGCATTGTACTGAGTTGCTTTCTTGTTCTAGTTATGGCAATATGATTAGCTGGGACACGGTGGAATTTCTACAAGGATACCCTCTTGACCTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045165 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0080090 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

226

Amino Acids

25.77

Weight (kDa)

6.72

Isoelectric Point (pI)

56.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	9 - 56	7.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	12 - 70	2e-15	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	62 - 107	1.1e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	65 - 112	4e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27920 AT5G14750 AT5G14750 AT5G14750 AT5G14750 AT5G40330
fragaria_vesca	FvH4_5g05280 FvH4_5g05280 FvH4_5g05280
malus_domestica	MD06G1174200.v1.1 MD13G1092300.v1.1 MD13G1092400.v1.1 MD14G1180700.v1.1 MD14G1180900.v1.1 MD14G1181000.v1.1 MD16G1093200.v1.1
prunus_persica	Prupe.1G253400_v2.0.a1 Prupe.5G174200_v2.0.a1
pyrus_communis	pycom06g15550 pycom13g08020 pycom14g15080
rosa_chinensis	RchiOBHm_Chr7g0193591
rosa_laevigata	RLG00000004258
rosa_roxburghii	Rroxscaffold_3G00261980
rosa_rugosa	Rorug07G0010600
rosa_samantha	Rh7AG137400 Rh7BG137600
rosa_wichuraiana	Rw7G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	386
Acc36I	ACCTGC	1 cut(s)	135
AccB1I	GGYRCC	1 cut(s)	466
AccBSI	CCGCTC	1 cut(s)	132
AccII	CGCG	1 cut(s)	186
AciI	CCGC	5 cut(s)	91, 100, 132, 186, 263
AcoI	YGGCCR	1 cut(s)	576
AcsI	RAATTY	2 cut(s)	484, 644
AcyI	GRCGYC	2 cut(s)	383, 467
AfaI	GTAC	6 cut(s)	20, 78, 273, 323, 444, 589
AfiI	CCNNNNNNNGG	2 cut(s)	123, 520
AflII	CTTAAG	1 cut(s)	121
AhlI	ACTAGT	1 cut(s)	439
AjnI	CCWGG	2 cut(s)	60, 274
AluBI	AGCT	5 cut(s)	141, 331, 405, 536, 630
AluI	AGCT	5 cut(s)	141, 331, 405, 536, 630
Alw26I	GTCTC	2 cut(s)	258, 426
AoxI	GGCC	2 cut(s)	88, 576
ApeKI	GCWGC	4 cut(s)	141, 349, 413, 533
ApoI	RAATTY	2 cut(s)	484, 644
AspLEI	GCGC	2 cut(s)	186, 469
AsuHPI	GGTGA	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	578
BanI	GGYRCC	1 cut(s)	466
BbsI	GAAGAC	1 cut(s)	216
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	4 cut(s)	128, 361, 400, 545
BccI	CCATC	2 cut(s)	171, 568
BciT130I	CCWGG	2 cut(s)	62, 276
BciVI	GTATCC	1 cut(s)	650
BclI	TGATCA	1 cut(s)	505
BcoDI	GTCTC	2 cut(s)	258, 426
BcuI	ACTAGT	1 cut(s)	439
BfaI	CTAG	2 cut(s)	440, 609
BfmI	CTRYAG	1 cut(s)	142
BfoI	RGCGCY	1 cut(s)	470
BfrI	CTTAAG	1 cut(s)	121
BfuAI	ACCTGC	1 cut(s)	135
BfuI	GTATCC	1 cut(s)	650
BisI	GCNGC	5 cut(s)	91, 142, 350, 414, 534
BlsI	GCNGC	5 cut(s)	92, 143, 351, 415, 535
Bme1390I	CCNGG	2 cut(s)	62, 276
BmiI	GGNNCC	2 cut(s)	98, 468
BmrFI	CCNGG	2 cut(s)	62, 276
BpiI	GAAGAC	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	2 cut(s)	402, 446
BsaHI	GRCGYC	2 cut(s)	383, 467
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	108, 238
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 520
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	2 cut(s)	311, 429
BseBI	CCWGG	2 cut(s)	62, 276
BseDI	CCNNGG	2 cut(s)	108, 238
BseGI	GGATG	2 cut(s)	55, 579
BseLI	CCNNNNNNNGG	2 cut(s)	123, 520
BseMII	CTCAG	4 cut(s)	181, 189, 528, 582
BseNI	ACTGG	2 cut(s)	311, 429
BseRI	GAGGAG	2 cut(s)	59, 142
BseXI	GCAGC	4 cut(s)	128, 361, 400, 545
BseYI	CCCAGC	1 cut(s)	630
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	90, 578
BshNI	GGYRCC	1 cut(s)	466
BsiSI	CCGG	2 cut(s)	117, 470
BslFI	GGGAC	1 cut(s)	647
BslI	CCNNNNNNNGG	2 cut(s)	123, 520
BsmAI	GTCTC	2 cut(s)	258, 426
BsmFI	GGGAC	1 cut(s)	647
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	90, 578
Bso31I	GGTCTC	1 cut(s)	258
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	1 cut(s)	505
BspACI	CCGC	5 cut(s)	91, 100, 132, 186, 263
BspANI	GGCC	2 cut(s)	90, 578
BspCNI	CTCAG	4 cut(s)	180, 190, 529, 583
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	98, 468
BspMAI	CTGCAG	1 cut(s)	146
BspMI	ACCTGC	1 cut(s)	135
BspQI	GCTCTTC	1 cut(s)	412
BspT107I	GGYRCC	1 cut(s)	466
BspTI	CTTAAG	1 cut(s)	121
BspTNI	GGTCTC	1 cut(s)	258
BsrBI	CCGCTC	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	116
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	311, 429
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	108, 238
BssMI	GATC	1 cut(s)	505
BssNI	GRCGYC	2 cut(s)	383, 467
BssT1I	CCWWGG	2 cut(s)	108, 238
Bst2UI	CCWGG	2 cut(s)	62, 276
Bst4CI	ACNGT	1 cut(s)	640
Bst6I	CTCTTC	4 cut(s)	79, 412, 491, 555
BstACI	GRCGYC	2 cut(s)	383, 467
BstAFI	CTTAAG	1 cut(s)	121
BstAUI	TGTACA	1 cut(s)	321
BstDEI	CTNAG	4 cut(s)	167, 198, 537, 591
BstEII	GGTNACC	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	55, 579
BstFNI	CGCG	1 cut(s)	186
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	2 cut(s)	186, 469
BstKTI	GATC	1 cut(s)	508
BstMAI	GTCTC	2 cut(s)	258, 426
BstMBI	GATC	1 cut(s)	505
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 138, 466
BstNI	CCWGG	2 cut(s)	62, 276
BstPI	GGTNACC	1 cut(s)	112
BstSCI	CCNGG	2 cut(s)	60, 274
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	4 cut(s)	128, 361, 400, 545
BstV2I	GAAGAC	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	650
BsuRI	GGCC	2 cut(s)	90, 578
BtsCI	GGATG	2 cut(s)	55, 579
BveI	ACCTGC	1 cut(s)	135
CfoI	GCGC	2 cut(s)	186, 469
Cfr10I	RCCGGY	1 cut(s)	116
Csp6I	GTAC	6 cut(s)	19, 77, 272, 322, 443, 588
CviAII	CATG	1 cut(s)	80
CviQI	GTAC	6 cut(s)	19, 77, 272, 322, 443, 588
DdeI	CTNAG	4 cut(s)	167, 198, 537, 591
DinI	GGCGCC	1 cut(s)	468
DpnI	GATC	1 cut(s)	507
DpnII	GATC	1 cut(s)	505
EaeI	YGGCCR	1 cut(s)	576
Eam1104I	CTCTTC	4 cut(s)	79, 412, 491, 555
EarI	CTCTTC	4 cut(s)	79, 412, 491, 555
Eco130I	CCWWGG	2 cut(s)	108, 238
Eco31I	GGTCTC	1 cut(s)	258
Eco91I	GGTNACC	1 cut(s)	112
EcoO65I	GGTNACC	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	60, 274
EcoT14I	CCWWGG	2 cut(s)	108, 238
EgeI	GGCGCC	1 cut(s)	468
EheI	GGCGCC	1 cut(s)	468
ErhI	CCWWGG	2 cut(s)	108, 238
FaeI	CATG	1 cut(s)	83
FaiI	YATR	8 cut(s)	15, 34, 71, 81, 341, 521, 615, 623
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	1 cut(s)	79
FauI	CCCGC	2 cut(s)	179, 256
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	5 cut(s)	91, 142, 350, 414, 534
FokI	GGATG	2 cut(s)	62, 586
Fsp4HI	GCNGC	5 cut(s)	91, 142, 350, 414, 534
FspBI	CTAG	2 cut(s)	440, 609
GlaI	GCGC	2 cut(s)	185, 468
GluI	GCNGC	5 cut(s)	91, 142, 350, 414, 534
GsaI	CCCAGC	1 cut(s)	634
HaeII	RGCGCY	1 cut(s)	470
HaeIII	GGCC	2 cut(s)	90, 578
HapII	CCGG	2 cut(s)	117, 470
HhaI	GCGC	2 cut(s)	186, 469
Hin1I	GRCGYC	2 cut(s)	383, 467
Hin1II	CATG	1 cut(s)	83
Hin6I	GCGC	2 cut(s)	184, 467
HinP1I	GCGC	2 cut(s)	184, 467
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	4 cut(s)	55, 473, 479, 542
HpaII	CCGG	2 cut(s)	117, 470
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	272, 445
Hpy188I	TCNGA	4 cut(s)	199, 224, 258, 478
Hpy188III	TCNNGA	4 cut(s)	360, 419, 493, 665
Hpy8I	GTNNAC	2 cut(s)	272, 445
Hpy99I	CGWCG	2 cut(s)	385, 388
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	640
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	3 cut(s)	144, 533, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 138, 466
HpyF3I	CTNAG	4 cut(s)	167, 198, 537, 591
HpySE526I	ACGT	1 cut(s)	383
Hsp92I	GRCGYC	2 cut(s)	383, 467
Hsp92II	CATG	1 cut(s)	83
HspAI	GCGC	2 cut(s)	184, 467
KasI	GGCGCC	1 cut(s)	466
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	1 cut(s)	505
LguI	GCTCTTC	1 cut(s)	412
LmnI	GCTCC	1 cut(s)	129
Lsp1109I	GCAGC	4 cut(s)	128, 361, 400, 545
MaeI	CTAG	2 cut(s)	440, 609
MaeII	ACGT	1 cut(s)	383
MaeIII	GTNAC	2 cut(s)	112, 490
MalI	GATC	1 cut(s)	507
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	1 cut(s)	505
MlsI	TGGCCA	1 cut(s)	578
MluCI	AATT	2 cut(s)	484, 644
MluNI	TGGCCA	1 cut(s)	578
Mly113I	GGCGCC	1 cut(s)	467
MlyI	GAGTC	2 cut(s)	467, 473
MnlI	CCTC	9 cut(s)	37, 40, 80, 120, 144, 193, 224, 532, 672
Mox20I	TGGCCA	1 cut(s)	578
MscI	TGGCCA	1 cut(s)	578
MseI	TTAA	2 cut(s)	122, 333
Msp20I	TGGCCA	1 cut(s)	578
MspA1I	CMGCKG	2 cut(s)	93, 536
MspCI	CTTAAG	1 cut(s)	121
MspI	CCGG	2 cut(s)	117, 470
MspR9I	CCNGG	2 cut(s)	62, 276
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	2 cut(s)	62, 276
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	3 cut(s)	99, 138, 466
NarI	GGCGCC	1 cut(s)	467
NdeII	GATC	1 cut(s)	505
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	2 cut(s)	98, 468
NmuCI	GTSAC	2 cut(s)	112, 490
PciSI	GCTCTTC	1 cut(s)	412
PctI	GAATGC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	55, 542
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	5 cut(s)	92, 143, 351, 415, 535
PleI	GAGTC	2 cut(s)	467, 473
PluTI	GGCGCC	1 cut(s)	470
PpsI	GAGTC	2 cut(s)	467, 473
Psp6I	CCWGG	2 cut(s)	60, 274
PspEI	GGTNACC	1 cut(s)	112
PspFI	CCCAGC	1 cut(s)	630
PspGI	CCWGG	2 cut(s)	60, 274
PspN4I	GGNNCC	2 cut(s)	98, 468
PstI	CTGCAG	1 cut(s)	146
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	6 cut(s)	20, 78, 273, 323, 444, 589
RsaNI	GTAC	6 cut(s)	19, 77, 272, 322, 443, 588
SapI	GCTCTTC	1 cut(s)	412
SaqAI	TTAA	2 cut(s)	122, 333
SatI	GCNGC	5 cut(s)	91, 142, 350, 414, 534
Sau3AI	GATC	1 cut(s)	505
SchI	GAGTC	2 cut(s)	467, 473
ScrFI	CCNGG	2 cut(s)	62, 276
SfcI	CTRYAG	1 cut(s)	142
SfoI	GGCGCC	1 cut(s)	468
SmlI	CTYRAG	3 cut(s)	121, 417, 461
SmoI	CTYRAG	3 cut(s)	121, 417, 461
SpeI	ACTAGT	1 cut(s)	439
Sse9I	AATT	2 cut(s)	484, 644
SsiI	CCGC	5 cut(s)	91, 100, 132, 186, 263
SspDI	GGCGCC	1 cut(s)	466
SspMI	CTAG	2 cut(s)	440, 609
StyD4I	CCNGG	2 cut(s)	60, 274
StyI	CCWWGG	2 cut(s)	108, 238
TaaI	ACNGT	1 cut(s)	640
TaiI	ACGT	1 cut(s)	386
TaqI	TCGA	2 cut(s)	380, 386
TasI	AATT	2 cut(s)	484, 644
TatI	WGTACW	4 cut(s)	18, 321, 442, 587
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	2 cut(s)	55, 542
Tru1I	TTAA	2 cut(s)	122, 333
Tru9I	TTAA	2 cut(s)	122, 333
TseFI	GTSAC	2 cut(s)	112, 490
TseI	GCWGC	4 cut(s)	141, 349, 413, 533
Tsp45I	GTSAC	2 cut(s)	112, 490
TspGWI	ACGGA	1 cut(s)	478
Vha464I	CTTAAG	1 cut(s)	121
XapI	RAATTY	2 cut(s)	484, 644
XspI	CTAG	2 cut(s)	440, 609
ZraI	GACGTC	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.