Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005570

Physical Location & Seq

Genomic Coordinates Reverse (-)

14846794 .. 14848535

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G174200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGAAGGTGGGAATGAGTATAAGAAAGGTCTTTGGACAGTGGAGGAGGACAGAATTCTAATGGATTATATAAGGATGCATGGAAAAGGGAAGTGGAATCGTGTTAATAAAGTCACAGGATTAAGGAGGTGTGGCAAAAGCTGCAGGTTAAGGTGGATGAATTATCTGAGCCCAAGTGTGAAGAGAGGTGACTTCTCTGAGGAAGAAGATGACCTTATCATTCGACTCCATAACCTCCTTGGAAACAGGTGGTCTTTGATAGCTGGACGTGTTCCTGGGAGAACTGACAACCAAGTCAAGAACCATTGGAACACTCATTTGAGCAAGAAGCTCGGTGTGAATTCGAAGAAGGGAAAGGCGAAAGCCAAGACTTGTTTAGGCTCAAAACAAATGAAAGGGAGCTTCTGTACGGCCTCAGAGTCAAACTCTGAGCAGCAGCCACAACCCAATTCCAATTCCAATATTGGTGATCATGAAGCTGCATCTGCTGCTGGGTTTGATGATAAATTGATGATGATCAAAGACAACATTGGCTCTAAAAGTGGGGTTGGTTTTAGTGGCATGTGGGAGGCGATGATGAACAACAATAATTATGACAGCTCCTTTTGGTTTTACAATGATGACCTTAATCTATATAGCCCTTATTATGTATTGGACCCTAGTCTAGATGATCACCATTACCCTCTTCAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

232

Amino Acids

26.36

Weight (kDa)

8.92

Isoelectric Point (pI)

56.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27920 AT5G14750 AT5G14750 AT5G14750 AT5G14750 AT5G40330
fragaria_vesca	FvH4_5g05280 FvH4_5g05280 FvH4_5g05280
malus_domestica	MD06G1174200.v1.1 MD13G1092300.v1.1 MD13G1092400.v1.1 MD14G1180700.v1.1 MD14G1180900.v1.1 MD14G1181000.v1.1 MD16G1093200.v1.1
prunus_persica	Prupe.1G253400_v2.0.a1 Prupe.5G174200_v2.0.a1
pyrus_communis	pycom06g15550 pycom13g08020 pycom14g15080
rosa_chinensis	RchiOBHm_Chr7g0193591
rosa_laevigata	RLG00000004258
rosa_roxburghii	Rroxscaffold_3G00261980
rosa_rugosa	Rorug07G0010600
rosa_samantha	Rh7AG137400 Rh7BG137600
rosa_wichuraiana	Rw7G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	135
AcsI	RAATTY	2 cut(s)	54, 340
AfaI	GTAC	1 cut(s)	409
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	1 cut(s)	689
AjiI	CACGTC	1 cut(s)	269
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	6 cut(s)	141, 263, 331, 402, 479, 600
AluI	AGCT	6 cut(s)	141, 263, 331, 402, 479, 600
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	5 cut(s)	141, 433, 436, 479, 488
ApoI	RAATTY	2 cut(s)	54, 340
AspS9I	GGNCC	1 cut(s)	655
AsuHPI	GGTGA	3 cut(s)	200, 479, 665
AsuII	TTCGAA	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	655
BanII	GRGCYC	1 cut(s)	173
BbvI	GCAGC	5 cut(s)	128, 445, 448, 466, 475
BceAI	ACGGC	1 cut(s)	426
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BciT130I	CCWGG	1 cut(s)	276
BclI	TGATCA	3 cut(s)	469, 516, 670
BfaI	CTAG	2 cut(s)	660, 665
BfmI	CTRYAG	1 cut(s)	142
BfuAI	ACCTGC	1 cut(s)	135
BisI	GCNGC	5 cut(s)	142, 434, 437, 480, 489
BlsI	GCNGC	5 cut(s)	143, 435, 438, 481, 490
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	1 cut(s)	655
BmgBI	CACGTC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	655
BmiI	GGNNCC	1 cut(s)	657
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	2 cut(s)	66, 491
BoxI	GACNNNNGTC	1 cut(s)	660
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
Bpu14I	TTCGAA	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	515
BsaJI	CCNNGG	2 cut(s)	238, 275
BsaXI	ACNNNNNCTCC	2 cut(s)	391, 421
Bse8I	GATNNNNATC	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	238, 275
BseGI	GGATG	2 cut(s)	81, 162
BseJI	GATNNNNATC	1 cut(s)	515
BseMII	CTCAG	4 cut(s)	158, 189, 420, 429
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	5 cut(s)	128, 445, 448, 466, 475
BseYI	CCCAGC	1 cut(s)	491
BshFI	GGCC	1 cut(s)	413
BsnI	GGCC	1 cut(s)	413
Bsp119I	TTCGAA	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	3 cut(s)	469, 516, 670
BspANI	GGCC	1 cut(s)	413
BspCNI	CTCAG	4 cut(s)	159, 190, 421, 428
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	1 cut(s)	657
BspMAI	CTGCAG	1 cut(s)	146
BspMI	ACCTGC	1 cut(s)	135
BspT104I	TTCGAA	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	238, 275
BssMI	GATC	3 cut(s)	469, 516, 670
BssT1I	CCWWGG	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	2 cut(s)	176, 690
BstAPI	GCANNNNNTGC	2 cut(s)	141, 488
BstBI	TTCGAA	1 cut(s)	344
BstDEI	CTNAG	4 cut(s)	167, 198, 415, 429
BstF5I	GGATG	2 cut(s)	81, 162
BstKTI	GATC	3 cut(s)	472, 519, 673
BstMBI	GATC	3 cut(s)	469, 516, 670
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 485, 488
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	565
BstPAI	GACNNNNGTC	1 cut(s)	660
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	5 cut(s)	128, 445, 448, 466, 475
BsuRI	GGCC	1 cut(s)	413
BtgZI	GCGATG	1 cut(s)	587
BtrI	CACGTC	1 cut(s)	269
BtsCI	GGATG	2 cut(s)	81, 162
BtsIMutI	CAGTG	1 cut(s)	45
BveI	ACCTGC	1 cut(s)	135
CciI	TCATGA	1 cut(s)	472
Cfr13I	GGNCC	1 cut(s)	655
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	3 cut(s)	80, 473, 562
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	4 cut(s)	167, 198, 415, 429
DpnI	GATC	3 cut(s)	471, 518, 672
DpnII	GATC	3 cut(s)	469, 516, 670
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
Eam1104I	CTCTTC	2 cut(s)	176, 690
EarI	CTCTTC	2 cut(s)	176, 690
Eco130I	CCWWGG	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	655
EcoRI	GAATTC	2 cut(s)	54, 340
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	238
EcoT22I	ATGCAT	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	3 cut(s)	83, 476, 565
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FatI	CATG	3 cut(s)	79, 472, 561
FbaI	TGATCA	3 cut(s)	469, 516, 670
Fnu4HI	GCNGC	5 cut(s)	142, 434, 437, 480, 489
FokI	GGATG	2 cut(s)	88, 169
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	5 cut(s)	142, 434, 437, 480, 489
FspBI	CTAG	2 cut(s)	660, 665
GluI	GCNGC	5 cut(s)	142, 434, 437, 480, 489
GsaI	CCCAGC	1 cut(s)	495
HaeIII	GGCC	1 cut(s)	413
Hin1II	CATG	3 cut(s)	83, 476, 565
HinfI	GANTC	3 cut(s)	97, 225, 419
HphI	GGTGA	3 cut(s)	200, 479, 665
Hpy188I	TCNGA	4 cut(s)	168, 199, 418, 430
Hpy188III	TCNNGA	3 cut(s)	298, 473, 665
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	3 cut(s)	79, 144, 482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 485, 488
HpyF3I	CTNAG	4 cut(s)	167, 198, 415, 429
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	3 cut(s)	83, 476, 565
Ksp22I	TGATCA	3 cut(s)	469, 516, 670
Kzo9I	GATC	3 cut(s)	469, 516, 670
LmnI	GCTCC	2 cut(s)	399, 605
LpnPI	CCDG	7 cut(s)	102, 130, 232, 249, 261, 288, 477
Lsp1109I	GCAGC	5 cut(s)	128, 445, 448, 466, 475
LweI	GCATC	2 cut(s)	66, 491
MaeI	CTAG	2 cut(s)	660, 665
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	2 cut(s)	112, 188
MalI	GATC	3 cut(s)	471, 518, 672
MboI	GATC	3 cut(s)	469, 516, 670
MboII	GAAGA	5 cut(s)	193, 215, 218, 358, 677
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	8 cut(s)	54, 160, 340, 448, 454, 506, 589, 689
MlyI	GAGTC	2 cut(s)	219, 428
MnlI	CCTC	9 cut(s)	37, 40, 120, 179, 193, 245, 424, 562, 693
Mph1103I	ATGCAT	1 cut(s)	81
MseI	TTAA	4 cut(s)	105, 122, 149, 627
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	3 cut(s)	141, 485, 488
NdeII	GATC	3 cut(s)	469, 516, 670
NlaIII	CATG	3 cut(s)	83, 476, 565
NlaIV	GGNNCC	1 cut(s)	657
NmuCI	GTSAC	2 cut(s)	112, 188
NsiI	ATGCAT	1 cut(s)	81
NspI	RCATGY	1 cut(s)	565
NspV	TTCGAA	1 cut(s)	344
PagI	TCATGA	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	97
PkrI	GCNGC	5 cut(s)	143, 435, 438, 481, 490
PleI	GAGTC	2 cut(s)	219, 427
PpsI	GAGTC	2 cut(s)	219, 427
PshAI	GACNNNNGTC	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	491
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	657
PspPI	GGNCC	1 cut(s)	655
PstI	CTGCAG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SaqAI	TTAA	4 cut(s)	105, 122, 149, 627
SatI	GCNGC	5 cut(s)	142, 434, 437, 480, 489
Sau3AI	GATC	3 cut(s)	469, 516, 670
Sau96I	GGNCC	1 cut(s)	655
SchI	GAGTC	2 cut(s)	219, 428
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	173
SfaNI	GCATC	2 cut(s)	66, 491
SfcI	CTRYAG	1 cut(s)	142
SfuI	TTCGAA	1 cut(s)	344
SinI	GGWCC	1 cut(s)	655
Sse9I	AATT	8 cut(s)	54, 160, 340, 448, 454, 506, 589, 689
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	2 cut(s)	660, 665
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	2 cut(s)	223, 344
TasI	AATT	8 cut(s)	54, 160, 340, 448, 454, 506, 589, 689
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	4 cut(s)	105, 122, 149, 627
Tru9I	TTAA	4 cut(s)	105, 122, 149, 627
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	2 cut(s)	112, 188
TseI	GCWGC	5 cut(s)	141, 433, 436, 479, 488
Tsp45I	GTSAC	2 cut(s)	112, 188
TspDTI	ATGAA	4 cut(s)	173, 407, 489, 593
TspRI	CASTG	1 cut(s)	45
VpaK11BI	GGWCC	1 cut(s)	655
XapI	RAATTY	2 cut(s)	54, 340
XbaI	TCTAGA	1 cut(s)	664
XceI	RCATGY	1 cut(s)	565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XspI	CTAG	2 cut(s)	660, 665
Zsp2I	ATGCAT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.