Rh7BG137600
MYB Family

Transcription factor WER-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0005570
Physical Location & Seq
Reverse (-)
10257915 .. 10259750
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG137600.1

Sequence Viewer

Length: 900 bp
ATGGAAGGTGGTGGAAGGAATCATGGATATAAGAAAGGTCTATGGACATCGGAGGAAGACAGAATTCTAACCGAGTATATCAAAGTCCATGGAAAAGGCAAGTGGAATCGAGTCACCAAAGTCACAGGTAATAACTTACTGCTAACTCTTGCTAATGTTTACAACTACTTTCATTTGTTCTCTCCCTTCTCCTATATATATTTACAGCAAGTATTCTGCAATGTGATGTATGTAGGATTGAAGAGGTGTGGGAAAAGCTGCAGATTGAGGTGGATGAACTATCTGAGCCCCACCGTGAAGCGTGGCGACTTCTCTGAGGAAGAAAACGATCTCATCATTCGCCTCCATAACCTCCTCGGAAACAGGTGGTCTCTGATAGCCGGACGGGTTCCGGGAAGAACCGACAACCAAGTAAAGAACCACTGGAATTCTCATTTGAGCAAAAAGCTCGGCGTGGTCAACAACTACAAAGGTGTAAAGAGCAAAGCCAAGAGTAGAAGTAGAAGTCATAGTTGTAGTAGTAGTACTACCACTTCCTCAGACCAACAAGCAAGTAGTCCAAAAGAACAGTCCAACTCTGCAGAGCTACAGCAGCAGCCACTACCTGATTCGAATAGCGACGGCTATGGTGAAGCAGCAGCACCAGCTCGCCATGGATGTGATGATGATCATGGTCAGGAGATGATGATCAGCCGAGATAGTGGTGTTGGGTTCAGTGGGATGTGGGAGACGATGATGATGGGTAGCAATAACAACTGTGATCAGGGCTCCTTTTGGTTTTACAATAATAATCAGGATGACCTAAATCTCTACAATCCTAATTATTTCATGGACCCTAGTCTAGATCATCACCATCTTCATAACTACTCTTTTGAATTTTTTGAGGACATCGGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

299

Amino Acids

34.16

Weight (kDa)

7.69

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 12 - 58 4.7e-07 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 15 - 109 3.3e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 101 - 146 1.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 104 - 149 3.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 63, 427, 875
AfaI GTAC 1 cut(s) 526
AgsI TTSAA 2 cut(s) 241, 875
AluBI AGCT 4 cut(s) 258, 448, 586, 647
AluI AGCT 4 cut(s) 258, 448, 586, 647
Alw26I GTCTC 2 cut(s) 375, 722
ApeKI GCWGC 5 cut(s) 258, 592, 595, 635, 638
ApoI RAATTY 3 cut(s) 63, 427, 875
ArsI GACNNNNNNTTYG 2 cut(s) 554, 586
AspS9I GGNCC 1 cut(s) 832
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 3 cut(s) 106, 641, 842
AsuII TTCGAA 1 cut(s) 611
AvaII GGWCC 1 cut(s) 832
BanII GRGCYC 2 cut(s) 290, 770
BarI GAAGNNNNNNTAC 2 cut(s) 517, 549
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 5 cut(s) 245, 604, 607, 647, 650
BccI CCATC 2 cut(s) 733, 861
BceAI ACGGC 1 cut(s) 637
BcgI CGANNNNNNTGC 2 cut(s) 430, 464
BclI TGATCA 3 cut(s) 667, 687, 760
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 2 cut(s) 375, 722
BfaI CTAG 3 cut(s) 837, 842, 898
BfmI CTRYAG 3 cut(s) 259, 579, 587
BisI GCNGC 5 cut(s) 259, 593, 596, 636, 639
BlsI GCNGC 5 cut(s) 260, 594, 597, 637, 640
BmcAI AGTACT 1 cut(s) 526
Bme1390I CCNGG 1 cut(s) 393
Bme18I GGWCC 1 cut(s) 832
BmgT120I GGNCC 1 cut(s) 832
BmiI GGNNCC 3 cut(s) 390, 769, 834
BmrFI CCNGG 1 cut(s) 393
BoxI GACNNNNGTC 1 cut(s) 837
BpiI GAAGAC 1 cut(s) 63
Bpu14I TTCGAA 1 cut(s) 611
BpuMI CCSGG 1 cut(s) 393
BsaBI GATNNNNATC 2 cut(s) 666, 686
BsaI GGTCTC 1 cut(s) 375
BsaJI CCNNGG 3 cut(s) 88, 355, 652
Bse1I ACTGG 1 cut(s) 428
Bse3DI GCAATG 1 cut(s) 226
Bse8I GATNNNNATC 2 cut(s) 666, 686
BseDI CCNNGG 3 cut(s) 88, 355, 652
BseGI GGATG 4 cut(s) 279, 662, 726, 802
BseJI GATNNNNATC 2 cut(s) 666, 686
BseMI GCAATG 1 cut(s) 226
BseMII CTCAG 3 cut(s) 275, 306, 552
BseNI ACTGG 1 cut(s) 428
BseRI GAGGAG 1 cut(s) 344
BseXI GCAGC 5 cut(s) 245, 604, 607, 647, 650
BsiSI CCGG 2 cut(s) 381, 392
BsmAI GTCTC 2 cut(s) 375, 722
BsmBI CGTCTC 1 cut(s) 722
Bso31I GGTCTC 1 cut(s) 375
Bsp119I TTCGAA 1 cut(s) 611
Bsp1286I GDGCHC 2 cut(s) 290, 770
Bsp143I GATC 5 cut(s) 328, 667, 687, 760, 844
Bsp19I CCATGG 2 cut(s) 88, 652
BspCNI CTCAG 3 cut(s) 276, 307, 551
BspLI GGNNCC 3 cut(s) 390, 769, 834
BspMAI CTGCAG 2 cut(s) 263, 583
BspT104I TTCGAA 1 cut(s) 611
BspTNI GGTCTC 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 226
BsrI ACTGG 1 cut(s) 428
BssECI CCNNGG 3 cut(s) 88, 355, 652
BssMI GATC 5 cut(s) 328, 667, 687, 760, 844
BssT1I CCWWGG 2 cut(s) 88, 652
Bst4CI ACNGT 3 cut(s) 295, 570, 758
Bst6I CTCTTC 1 cut(s) 236
BstBI TTCGAA 1 cut(s) 611
BstC8I GCNNGC 1 cut(s) 649
BstDEI CTNAG 3 cut(s) 284, 315, 538
BstDSI CCRYGG 2 cut(s) 88, 652
BstF5I GGATG 4 cut(s) 279, 662, 726, 802
BstKTI GATC 5 cut(s) 331, 670, 690, 763, 847
BstMAI GTCTC 2 cut(s) 375, 722
BstMBI GATC 5 cut(s) 328, 667, 687, 760, 844
BstMWI GCNNNNNNNGC 2 cut(s) 592, 644
BstPAI GACNNNNGTC 1 cut(s) 837
BstSCI CCNGG 1 cut(s) 391
BstSFI CTRYAG 3 cut(s) 259, 579, 587
BstV1I GCAGC 5 cut(s) 245, 604, 607, 647, 650
BstV2I GAAGAC 1 cut(s) 63
BtgI CCRYGG 2 cut(s) 88, 652
BtsCI GGATG 4 cut(s) 279, 662, 726, 802
BtsIMutI CAGTG 2 cut(s) 421, 721
Cac8I GCNNGC 1 cut(s) 649
Cfr13I GGNCC 1 cut(s) 832
Csp6I GTAC 1 cut(s) 525
CviAII CATG 5 cut(s) 23, 89, 653, 671, 829
CviQI GTAC 1 cut(s) 525
DdeI CTNAG 3 cut(s) 284, 315, 538
DpnI GATC 5 cut(s) 330, 669, 689, 762, 846
DpnII GATC 5 cut(s) 328, 667, 687, 760, 844
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco130I CCWWGG 2 cut(s) 88, 652
Eco24I GRGCYC 2 cut(s) 290, 770
Eco31I GGTCTC 1 cut(s) 375
Eco47I GGWCC 1 cut(s) 832
EcoRI GAATTC 2 cut(s) 63, 427
EcoT14I CCWWGG 2 cut(s) 88, 652
EcoT38I GRGCYC 2 cut(s) 290, 770
ErhI CCWWGG 2 cut(s) 88, 652
Esp3I CGTCTC 1 cut(s) 722
FaeI CATG 5 cut(s) 26, 92, 656, 674, 832
FatI CATG 5 cut(s) 22, 88, 652, 670, 828
FbaI TGATCA 3 cut(s) 667, 687, 760
Fnu4HI GCNGC 5 cut(s) 259, 593, 596, 636, 639
FokI GGATG 4 cut(s) 286, 669, 733, 809
FriOI GRGCYC 2 cut(s) 290, 770
Fsp4HI GCNGC 5 cut(s) 259, 593, 596, 636, 639
FspBI CTAG 3 cut(s) 837, 842, 898
GluI GCNGC 5 cut(s) 259, 593, 596, 636, 639
HapII CCGG 2 cut(s) 381, 392
Hin1II CATG 5 cut(s) 26, 92, 656, 674, 832
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HinfI GANTC 4 cut(s) 19, 106, 111, 608
HpaII CCGG 2 cut(s) 381, 392
HphI GGTGA 3 cut(s) 106, 641, 842
Hpy166II GTNNAC 2 cut(s) 160, 460
Hpy188I TCNGA 6 cut(s) 52, 285, 316, 359, 375, 541
Hpy188III TCNNGA 3 cut(s) 677, 794, 842
Hpy8I GTNNAC 2 cut(s) 160, 460
Hpy99I CGWCG 1 cut(s) 623
HpyAV CCTTC 2 cut(s) 9, 196
HpyCH4III ACNGT 3 cut(s) 295, 570, 758
HpyCH4V TGCA 3 cut(s) 219, 261, 581
HpyF10VI GCNNNNNNNGC 2 cut(s) 592, 644
HpyF3I CTNAG 3 cut(s) 284, 315, 538
Hsp92II CATG 5 cut(s) 26, 92, 656, 674, 832
Ksp22I TGATCA 3 cut(s) 667, 687, 760
Kzo9I GATC 5 cut(s) 328, 667, 687, 760, 844
LmnI GCTCC 1 cut(s) 773
Lsp1109I GCAGC 5 cut(s) 245, 604, 607, 647, 650
MaeI CTAG 3 cut(s) 837, 842, 898
MaeIII GTNAC 2 cut(s) 112, 121
MalI GATC 5 cut(s) 330, 669, 689, 762, 846
MboI GATC 5 cut(s) 328, 667, 687, 760, 844
MboII GAAGA 5 cut(s) 68, 253, 332, 408, 848
MhlI GDGCHC 2 cut(s) 290, 770
MluCI AATT 4 cut(s) 63, 427, 820, 875
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 597
MnlI CCTC 9 cut(s) 46, 237, 261, 310, 353, 362, 365, 547, 877
MslI CAYNNNNRTG 1 cut(s) 657
MspI CCGG 2 cut(s) 381, 392
MspR9I CCNGG 1 cut(s) 393
MwoI GCNNNNNNNGC 2 cut(s) 592, 644
NciI CCSGG 1 cut(s) 393
NcoI CCATGG 2 cut(s) 88, 652
NdeII GATC 5 cut(s) 328, 667, 687, 760, 844
NlaIII CATG 5 cut(s) 26, 92, 656, 674, 832
NlaIV GGNNCC 3 cut(s) 390, 769, 834
NmeAIII GCCGAG 2 cut(s) 429, 719
NmuCI GTSAC 2 cut(s) 112, 121
NspV TTCGAA 1 cut(s) 611
PfeI GAWTC 3 cut(s) 19, 106, 608
PfoI TCCNGGA 1 cut(s) 391
PkrI GCNGC 5 cut(s) 260, 594, 597, 637, 640
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PshAI GACNNNNGTC 1 cut(s) 837
PspN4I GGNNCC 3 cut(s) 390, 769, 834
PspPI GGNCC 1 cut(s) 832
PstI CTGCAG 2 cut(s) 263, 583
RsaI GTAC 1 cut(s) 526
RsaNI GTAC 1 cut(s) 525
RseI CAYNNNNRTG 1 cut(s) 657
SatI GCNGC 5 cut(s) 259, 593, 596, 636, 639
Sau3AI GATC 5 cut(s) 328, 667, 687, 760, 844
Sau96I GGNCC 1 cut(s) 832
ScaI AGTACT 1 cut(s) 526
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 2 cut(s) 290, 770
SfcI CTRYAG 3 cut(s) 259, 579, 587
SfuI TTCGAA 1 cut(s) 611
SinI GGWCC 1 cut(s) 832
SmiMI CAYNNNNRTG 1 cut(s) 657
Sse9I AATT 4 cut(s) 63, 427, 820, 875
SspMI CTAG 3 cut(s) 837, 842, 898
StyD4I CCNGG 1 cut(s) 391
StyI CCWWGG 2 cut(s) 88, 652
TaaI ACNGT 3 cut(s) 295, 570, 758
TaqI TCGA 2 cut(s) 109, 611
TasI AATT 4 cut(s) 63, 427, 820, 875
TatI WGTACW 1 cut(s) 524
TfiI GAWTC 3 cut(s) 19, 106, 608
TscAI CASTG 2 cut(s) 428, 721
TseFI GTSAC 2 cut(s) 112, 121
TseI GCWGC 5 cut(s) 258, 592, 595, 635, 638
Tsp45I GTSAC 2 cut(s) 112, 121
TspDTI ATGAA 4 cut(s) 161, 290, 817, 848
TspRI CASTG 2 cut(s) 428, 721
VpaK11BI GGWCC 1 cut(s) 832
XapI RAATTY 3 cut(s) 63, 427, 875
XbaI TCTAGA 1 cut(s) 841
XspI CTAG 3 cut(s) 837, 842, 898
ZrmI AGTACT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.