Rh7AG137400
MYB Family

Transcription factor WER-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005570
Physical Location & Seq
Reverse (-)
10983175 .. 10985010
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG137400.1

Sequence Viewer

Length: 795 bp
ATGGAAGGTAGTGGAAGGAATCATGGATATAAGAAAGGTCTATGGACAGCGGAGGAAGACAGAATTCTAACCGAGTATATCAAAGTCCATGGAAAAGGCAAGTGGAATCGAGTCACCAAAGTCACAGGATTGAAGAGGTGTGGGAAAAGCTGCAGATTGAGGTGGATGAACTATCTGAGCCCCACCGTGAAGCGTGGCGACTTCTCTGAGGAAGAAAACGATCTCATCATTCGCCTCCATAACCTCCTCGGAAACAGGTGGTCTCTGATAGCCGGACGGGTTCCGGGAAGAACCGACAACCAAGTAAAGAACCACTGGAATTCTCATTTGAGCAAAAAGCTCGGTGCGGTCAACAACTACAAAGGTGTAAAGAGCAAAGCCAAGAGTAGAAGTAGAAGTCATAGTAGTAGTACTACTACTACTACTACTTCCTCAGACCAACAAGCAAGTAGTCCAAAAGAACAGTCCAACTCTGCAGAGCTACAGCAGCAGCCACTATCTGATTCGAATAGCGACGGCTATGGTGAAGCAGCAGCACCAGCTCGCCATGGATGTGATGATGATCATGATCAGGAGATGATGATCAGTCGAGATAGTGGCGTTGCGTTCAGTGGGATGTGGGAGACGATGATGATGGGTAGCAATAACAATTGTGACCAGAGCTCCTTTTGGTTTTACAATAATAATCAGGATGACCTAAATCTCTACAATCCTAATTATTTCATGGACCCTAGTCTAGATCACCACCATCTTCATAACTACTCTTTTGAATTTTTTGAGGACATCGGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

264

Amino Acids

30.05

Weight (kDa)

7.2

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 12 - 59 3.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 15 - 72 8.2e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 65 - 110 1.2e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 68 - 113 2.7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 50, 347
AcsI RAATTY 3 cut(s) 63, 319, 770
AfaI GTAC 1 cut(s) 412
AgsI TTSAA 2 cut(s) 133, 770
AluBI AGCT 5 cut(s) 150, 340, 481, 542, 663
AluI AGCT 5 cut(s) 150, 340, 481, 542, 663
Alw21I GWGCWC 1 cut(s) 665
Alw26I GTCTC 2 cut(s) 267, 617
ApeKI GCWGC 5 cut(s) 150, 487, 490, 530, 533
ApoI RAATTY 3 cut(s) 63, 319, 770
ArsI GACNNNNNNTTYG 2 cut(s) 449, 481
AspS9I GGNCC 1 cut(s) 727
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 3 cut(s) 106, 536, 734
AsuII TTCGAA 1 cut(s) 506
AvaII GGWCC 1 cut(s) 727
BanII GRGCYC 2 cut(s) 182, 665
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 665
BbvI GCAGC 5 cut(s) 137, 499, 502, 542, 545
BccI CCATC 2 cut(s) 628, 756
BceAI ACGGC 1 cut(s) 532
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BclI TGATCA 3 cut(s) 562, 568, 582
BcnI CCSGG 1 cut(s) 285
BcoDI GTCTC 2 cut(s) 267, 617
BfaI CTAG 3 cut(s) 732, 737, 793
BfmI CTRYAG 3 cut(s) 151, 474, 482
BisI GCNGC 5 cut(s) 151, 488, 491, 531, 534
BlsI GCNGC 5 cut(s) 152, 489, 492, 532, 535
BmcAI AGTACT 1 cut(s) 412
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 1 cut(s) 727
BmgT120I GGNCC 1 cut(s) 727
BmiI GGNNCC 2 cut(s) 282, 729
BmrFI CCNGG 1 cut(s) 285
BoxI GACNNNNGTC 1 cut(s) 732
BpiI GAAGAC 1 cut(s) 63
Bpu14I TTCGAA 1 cut(s) 506
BpuMI CCSGG 1 cut(s) 285
BsaBI GATNNNNATC 3 cut(s) 561, 567, 581
BsaI GGTCTC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 88, 247, 547
BsaXI ACNNNNNCTCC 2 cut(s) 647, 677
Bse1I ACTGG 1 cut(s) 320
Bse8I GATNNNNATC 3 cut(s) 561, 567, 581
BseDI CCNNGG 3 cut(s) 88, 247, 547
BseGI GGATG 4 cut(s) 171, 557, 621, 697
BseJI GATNNNNATC 3 cut(s) 561, 567, 581
BseMII CTCAG 3 cut(s) 167, 198, 447
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 5 cut(s) 137, 499, 502, 542, 545
BsiHKAI GWGCWC 1 cut(s) 665
BsiSI CCGG 2 cut(s) 273, 284
BsmAI GTCTC 2 cut(s) 267, 617
BsmBI CGTCTC 1 cut(s) 617
Bso31I GGTCTC 1 cut(s) 267
Bsp119I TTCGAA 1 cut(s) 506
Bsp1286I GDGCHC 2 cut(s) 182, 665
Bsp143I GATC 5 cut(s) 220, 562, 568, 582, 739
Bsp19I CCATGG 2 cut(s) 88, 547
BspACI CCGC 2 cut(s) 50, 347
BspCNI CTCAG 3 cut(s) 168, 199, 446
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 2 cut(s) 282, 729
BspMAI CTGCAG 2 cut(s) 155, 478
BspT104I TTCGAA 1 cut(s) 506
BspTNI GGTCTC 1 cut(s) 267
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 3 cut(s) 88, 247, 547
BssMI GATC 5 cut(s) 220, 562, 568, 582, 739
BssT1I CCWWGG 2 cut(s) 88, 547
Bst4CI ACNGT 2 cut(s) 187, 465
Bst6I CTCTTC 1 cut(s) 128
BstBI TTCGAA 1 cut(s) 506
BstC8I GCNNGC 1 cut(s) 544
BstDEI CTNAG 3 cut(s) 176, 207, 433
BstDSI CCRYGG 2 cut(s) 88, 547
BstF5I GGATG 4 cut(s) 171, 557, 621, 697
BstKTI GATC 5 cut(s) 223, 565, 571, 585, 742
BstMAI GTCTC 2 cut(s) 267, 617
BstMBI GATC 5 cut(s) 220, 562, 568, 582, 739
BstMWI GCNNNNNNNGC 2 cut(s) 487, 539
BstPAI GACNNNNGTC 1 cut(s) 732
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 3 cut(s) 151, 474, 482
BstV1I GCAGC 5 cut(s) 137, 499, 502, 542, 545
BstV2I GAAGAC 1 cut(s) 63
BtgI CCRYGG 2 cut(s) 88, 547
BtsCI GGATG 4 cut(s) 171, 557, 621, 697
BtsIMutI CAGTG 2 cut(s) 313, 616
Cac8I GCNNGC 1 cut(s) 544
CciI TCATGA 1 cut(s) 565
Cfr13I GGNCC 1 cut(s) 727
Csp6I GTAC 1 cut(s) 411
CviAII CATG 5 cut(s) 23, 89, 548, 566, 724
CviQI GTAC 1 cut(s) 411
DdeI CTNAG 3 cut(s) 176, 207, 433
DpnI GATC 5 cut(s) 222, 564, 570, 584, 741
DpnII GATC 5 cut(s) 220, 562, 568, 582, 739
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Ecl136II GAGCTC 1 cut(s) 663
Eco130I CCWWGG 2 cut(s) 88, 547
Eco24I GRGCYC 2 cut(s) 182, 665
Eco31I GGTCTC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 727
Eco53kI GAGCTC 1 cut(s) 663
EcoICRI GAGCTC 1 cut(s) 663
EcoRI GAATTC 2 cut(s) 63, 319
EcoT14I CCWWGG 2 cut(s) 88, 547
EcoT38I GRGCYC 2 cut(s) 182, 665
ErhI CCWWGG 2 cut(s) 88, 547
Esp3I CGTCTC 1 cut(s) 617
FaeI CATG 5 cut(s) 26, 92, 551, 569, 727
FatI CATG 5 cut(s) 22, 88, 547, 565, 723
FbaI TGATCA 3 cut(s) 562, 568, 582
Fnu4HI GCNGC 5 cut(s) 151, 488, 491, 531, 534
FokI GGATG 4 cut(s) 178, 564, 628, 704
FriOI GRGCYC 2 cut(s) 182, 665
Fsp4HI GCNGC 5 cut(s) 151, 488, 491, 531, 534
FspBI CTAG 3 cut(s) 732, 737, 793
GluI GCNGC 5 cut(s) 151, 488, 491, 531, 534
HapII CCGG 2 cut(s) 273, 284
Hin1II CATG 5 cut(s) 26, 92, 551, 569, 727
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 4 cut(s) 19, 106, 111, 503
HpaII CCGG 2 cut(s) 273, 284
HphI GGTGA 3 cut(s) 106, 536, 734
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 6 cut(s) 177, 208, 251, 267, 436, 502
Hpy188III TCNNGA 5 cut(s) 566, 572, 590, 689, 737
Hpy8I GTNNAC 1 cut(s) 352
Hpy99I CGWCG 1 cut(s) 518
HpyAV CCTTC 1 cut(s) 9
HpyCH4III ACNGT 2 cut(s) 187, 465
HpyCH4V TGCA 2 cut(s) 153, 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 487, 539
HpyF3I CTNAG 3 cut(s) 176, 207, 433
Hsp92II CATG 5 cut(s) 26, 92, 551, 569, 727
Ksp22I TGATCA 3 cut(s) 562, 568, 582
Kzo9I GATC 5 cut(s) 220, 562, 568, 582, 739
LmnI GCTCC 1 cut(s) 668
LpnPI CCDG 9 cut(s) 111, 241, 286, 297, 301, 552, 557, 671, 674
Lsp1109I GCAGC 5 cut(s) 137, 499, 502, 542, 545
MaeI CTAG 3 cut(s) 732, 737, 793
MaeIII GTNAC 3 cut(s) 112, 121, 653
MalI GATC 5 cut(s) 222, 564, 570, 584, 741
MboI GATC 5 cut(s) 220, 562, 568, 582, 739
MboII GAAGA 5 cut(s) 68, 145, 224, 300, 743
MfeI CAATTG 1 cut(s) 649
MhlI GDGCHC 2 cut(s) 182, 665
MluCI AATT 5 cut(s) 63, 319, 649, 715, 770
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 9 cut(s) 46, 129, 153, 202, 245, 254, 257, 442, 772
MslI CAYNNNNRTG 1 cut(s) 552
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 2 cut(s) 273, 284
MspR9I CCNGG 1 cut(s) 285
MunI CAATTG 1 cut(s) 649
MwoI GCNNNNNNNGC 2 cut(s) 487, 539
NciI CCSGG 1 cut(s) 285
NcoI CCATGG 2 cut(s) 88, 547
NdeII GATC 5 cut(s) 220, 562, 568, 582, 739
NlaIII CATG 5 cut(s) 26, 92, 551, 569, 727
NlaIV GGNNCC 2 cut(s) 282, 729
NmuCI GTSAC 3 cut(s) 112, 121, 653
NspV TTCGAA 1 cut(s) 506
PagI TCATGA 1 cut(s) 565
PfeI GAWTC 3 cut(s) 19, 106, 503
PfoI TCCNGGA 1 cut(s) 283
PkrI GCNGC 5 cut(s) 152, 489, 492, 532, 535
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PshAI GACNNNNGTC 1 cut(s) 732
Psp124BI GAGCTC 1 cut(s) 665
PspN4I GGNNCC 2 cut(s) 282, 729
PspPI GGNCC 1 cut(s) 727
PstI CTGCAG 2 cut(s) 155, 478
RsaI GTAC 1 cut(s) 412
RsaNI GTAC 1 cut(s) 411
RseI CAYNNNNRTG 1 cut(s) 552
SacI GAGCTC 1 cut(s) 665
SatI GCNGC 5 cut(s) 151, 488, 491, 531, 534
Sau3AI GATC 5 cut(s) 220, 562, 568, 582, 739
Sau96I GGNCC 1 cut(s) 727
ScaI AGTACT 1 cut(s) 412
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 2 cut(s) 182, 665
SfcI CTRYAG 3 cut(s) 151, 474, 482
SfuI TTCGAA 1 cut(s) 506
SinI GGWCC 1 cut(s) 727
SmiMI CAYNNNNRTG 1 cut(s) 552
Sse9I AATT 5 cut(s) 63, 319, 649, 715, 770
SsiI CCGC 2 cut(s) 50, 347
SspMI CTAG 3 cut(s) 732, 737, 793
SstI GAGCTC 1 cut(s) 665
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 2 cut(s) 88, 547
TaaI ACNGT 2 cut(s) 187, 465
TaqI TCGA 3 cut(s) 109, 506, 589
TasI AATT 5 cut(s) 63, 319, 649, 715, 770
TatI WGTACW 1 cut(s) 410
TfiI GAWTC 3 cut(s) 19, 106, 503
TscAI CASTG 2 cut(s) 320, 616
TseFI GTSAC 3 cut(s) 112, 121, 653
TseI GCWGC 5 cut(s) 150, 487, 490, 530, 533
Tsp45I GTSAC 3 cut(s) 112, 121, 653
TspDTI ATGAA 3 cut(s) 182, 712, 743
TspRI CASTG 2 cut(s) 320, 616
VpaK11BI GGWCC 1 cut(s) 727
XapI RAATTY 3 cut(s) 63, 319, 770
XbaI TCTAGA 1 cut(s) 736
XspI CTAG 3 cut(s) 732, 737, 793
ZrmI AGTACT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.