Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005570

Physical Location & Seq

Genomic Coordinates Forward (+)

6509095 .. 6510256

Gene Structure 1162 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1092300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAAGGAGAATATGAGTACAAGAAGCGGTTATGGACAAAGGAGGAGGATGAGATTCTCCTGGACTACATAATAAGGGTACATGGAAGAGGCCACTGGAACCGCATTCCCAAGGTCACCGGGTTAAGGAGGAGCGGGAAGAGCTGCAGGTTGAGGTGGCTCAACCATCTCAGCCCAAATGTGAAGCGCGGGGATTTTTCTGAGGAAGAAGAAGACCTCATTATCAGACTTCACAATCTCCTTGGAAACAGGTGGTCTCTGATTGCGGGGCGTGTACCAGGAAGAACTGACAACCAAGTAAAGAACTACTGGAACAATCATTTGTACAAAAAGCTTAACGCCATAAAAAAGCGGCAGACACCTAGAAAAGCTGCTGTTGTTTCGGCAAAATTCAAAATTTGTCAGCAAAGTGTCTTTCCTGAGGAAAAAATTTGTCGGCAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045165 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0080090 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

149

Amino Acids

17.69

Weight (kDa)

10.01

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	11 - 57	6.8e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	12 - 71	1.9e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	63 - 108	2.5e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	66 - 113	5.6e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27920 AT5G14750 AT5G14750 AT5G14750 AT5G14750 AT5G40330
fragaria_vesca	FvH4_5g05280 FvH4_5g05280 FvH4_5g05280
malus_domestica	MD06G1174200.v1.1 MD13G1092300.v1.1 MD13G1092400.v1.1 MD14G1180700.v1.1 MD14G1180900.v1.1 MD14G1181000.v1.1 MD16G1093200.v1.1
prunus_persica	Prupe.1G253400_v2.0.a1 Prupe.5G174200_v2.0.a1
pyrus_communis	pycom06g15550 pycom13g08020 pycom14g15080
rosa_chinensis	RchiOBHm_Chr7g0193591
rosa_laevigata	RLG00000004258
rosa_roxburghii	Rroxscaffold_3G00261980
rosa_rugosa	Rorug07G0010600
rosa_samantha	Rh7AG137400 Rh7BG137600
rosa_wichuraiana	Rw7G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	138
AccBSI	CCGCTC	1 cut(s)	135
AccII	CGCG	1 cut(s)	189
AciI	CCGC	6 cut(s)	28, 103, 135, 189, 266, 352
AcsI	RAATTY	3 cut(s)	389, 396, 429
AfaI	GTAC	4 cut(s)	20, 81, 276, 326
AfiI	CCNNNNNNNGG	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	394
AjnI	CCWGG	2 cut(s)	60, 277
AluBI	AGCT	3 cut(s)	144, 334, 371
AluI	AGCT	3 cut(s)	144, 334, 371
Alw26I	GTCTC	1 cut(s)	261
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	2 cut(s)	144, 371
ApoI	RAATTY	3 cut(s)	389, 396, 429
AspLEI	GCGC	1 cut(s)	189
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	109
AxyI	CCTNAGG	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	131, 358
BccI	CCATC	1 cut(s)	174
BciT130I	CCWGG	2 cut(s)	62, 279
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	145
BfuAI	ACCTGC	1 cut(s)	138
BisI	GCNGC	3 cut(s)	145, 353, 372
BlsI	GCNGC	3 cut(s)	146, 354, 373
Bme1390I	CCNGG	3 cut(s)	62, 121, 279
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	3 cut(s)	62, 121, 279
BpiI	GAAGAC	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	111, 241
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse1I	ACTGG	2 cut(s)	101, 314
Bse21I	CCTNAGG	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	62, 279
BseDI	CCNNGG	2 cut(s)	111, 241
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMII	CTCAG	3 cut(s)	184, 192, 411
BseNI	ACTGG	2 cut(s)	101, 314
BseRI	GAGGAG	2 cut(s)	59, 145
BseXI	GCAGC	2 cut(s)	131, 358
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	261
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	93
Bso31I	GGTCTC	1 cut(s)	261
Bsp1407I	TGTACA	1 cut(s)	324
BspACI	CCGC	6 cut(s)	28, 103, 135, 189, 266, 352
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	3 cut(s)	183, 193, 412
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	101
BspMAI	CTGCAG	1 cut(s)	149
BspMI	ACCTGC	1 cut(s)	138
BspQI	GCTCTTC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	135
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	101, 314
BssECI	CCNNGG	2 cut(s)	111, 241
BssT1I	CCWWGG	2 cut(s)	111, 241
Bst2UI	CCWGG	2 cut(s)	62, 279
Bst6I	CTCTTC	2 cut(s)	82, 134
BstAUI	TGTACA	1 cut(s)	324
BstDEI	CTNAG	3 cut(s)	170, 201, 420
BstEII	GGTNACC	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNI	CCWGG	2 cut(s)	62, 279
BstPI	GGTNACC	1 cut(s)	115
BstSCI	CCNGG	3 cut(s)	60, 119, 277
BstSFI	CTRYAG	1 cut(s)	145
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	131, 358
BstV2I	GAAGAC	1 cut(s)	219
Bsu36I	CCTNAGG	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	94
BveI	ACCTGC	1 cut(s)	138
CfoI	GCGC	1 cut(s)	189
Csp6I	GTAC	4 cut(s)	19, 80, 275, 325
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	6 cut(s)	93, 144, 160, 174, 334, 371
CviKI_1	RGCY	6 cut(s)	93, 144, 160, 174, 334, 371
CviQI	GTAC	4 cut(s)	19, 80, 275, 325
DdeI	CTNAG	3 cut(s)	170, 201, 420
Eam1104I	CTCTTC	2 cut(s)	82, 134
EarI	CTCTTC	2 cut(s)	82, 134
Eco130I	CCWWGG	2 cut(s)	111, 241
Eco31I	GGTCTC	1 cut(s)	261
Eco81I	CCTNAGG	1 cut(s)	420
Eco91I	GGTNACC	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	60, 277
EcoT14I	CCWWGG	2 cut(s)	111, 241
ErhI	CCWWGG	2 cut(s)	111, 241
FaeI	CATG	1 cut(s)	86
FaiI	YATR	5 cut(s)	15, 34, 71, 84, 344
FatI	CATG	1 cut(s)	82
FauI	CCCGC	3 cut(s)	128, 182, 259
Fnu4HI	GCNGC	3 cut(s)	145, 353, 372
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	3 cut(s)	145, 353, 372
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	3 cut(s)	145, 353, 372
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	1 cut(s)	120
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	1 cut(s)	55
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	3 cut(s)	202, 227, 261
Hpy188III	TCNNGA	1 cut(s)	419
Hpy8I	GTNNAC	1 cut(s)	275
HpyCH4V	TGCA	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	3 cut(s)	170, 201, 420
Hsp92II	CATG	1 cut(s)	86
HspAI	GCGC	1 cut(s)	187
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	132
Lsp1109I	GCAGC	2 cut(s)	131, 358
MaeI	CTAG	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	115
MbiI	CCGCTC	1 cut(s)	135
MboII	GAAGA	6 cut(s)	99, 151, 218, 221, 224, 294
MluCI	AATT	4 cut(s)	389, 396, 429, 440
MnlI	CCTC	8 cut(s)	37, 40, 83, 123, 147, 196, 227, 415
MseI	TTAA	2 cut(s)	125, 336
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	3 cut(s)	62, 121, 279
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	2 cut(s)	62, 279
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	141
NciI	CCSGG	1 cut(s)	121
NlaIII	CATG	1 cut(s)	86
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	134
PctI	GAATGC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	55
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	3 cut(s)	146, 354, 373
Psp6I	CCWGG	2 cut(s)	60, 277
PspEI	GGTNACC	1 cut(s)	115
PspGI	CCWGG	2 cut(s)	60, 277
PspN4I	GGNNCC	1 cut(s)	101
PstI	CTGCAG	1 cut(s)	149
RsaI	GTAC	4 cut(s)	20, 81, 276, 326
RsaNI	GTAC	4 cut(s)	19, 80, 275, 325
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	125, 336
SatI	GCNGC	3 cut(s)	145, 353, 372
ScrFI	CCNGG	3 cut(s)	62, 121, 279
SetI	ASST	9 cut(s)	117, 146, 152, 158, 219, 254, 336, 364, 373
SfcI	CTRYAG	1 cut(s)	145
Sse9I	AATT	4 cut(s)	389, 396, 429, 440
SsiI	CCGC	6 cut(s)	28, 103, 135, 189, 266, 352
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	3 cut(s)	60, 119, 277
StyI	CCWWGG	2 cut(s)	111, 241
TasI	AATT	4 cut(s)	389, 396, 429, 440
TatI	WGTACW	2 cut(s)	18, 324
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	2 cut(s)	125, 336
Tru9I	TTAA	2 cut(s)	125, 336
TscAI	CASTG	1 cut(s)	101
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	2 cut(s)	144, 371
Tsp45I	GTSAC	1 cut(s)	115
TspRI	CASTG	1 cut(s)	101
XapI	RAATTY	3 cut(s)	389, 396, 429
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.