FvH4_5g05280
MYB Family

Transcription factor WER-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0005570
Physical Location & Seq
Forward (+)
3084505 .. 3086485
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05280.t1

Sequence Viewer

Length: 771 bp
ATGGAAGATGGTGGAAGGAATCATGGATATAAGAAAGGTCTATGGACAGCAGAGGAGGACATAATTCTAACCGAGTATATCAAAGTCCATGGAAAAGGCAAGTGGAATCGAGTCACCAAAGTTACAGGATTGAAGAGGTGCGGGAAAAGCTGCAGATTGAGGTGGATGAACTATCTGAGCCCCACCGTGAAGCGCGGCGACTTCTCTGAGGAAGAAAACGATCTCATCATTCGCCTCCATAACCTCCTCGGAAACAGGTGGTCTCTGATAGCCGGACGGGTTCCGGGAAGAACCGACAACCAAGTAAAGAACCACTGGAATTCTCATTTGAGTAAGAAGCTCGGTGTAAAAAGCAAAGCCAAGAATAGAAGTAGAAGAAGTCATAGCAGTAGTACTACTACCTCAGACCAACAAGCAAGTCCAAAAGAAAAGTTCAACACTGCAGAGCTACAGCAGCAGCCACTACCTGATGATTCGAATGGCGGTGGTTATGGTGAAGCAGCAGCACAGGGCGGCCATGGATGTGATGATGATCATGAGCAGGAGATGATGATAATCAGCAGAGATAGTGATGTTGAGTTCAGTGGGATGTGGGAGACGATGATGATGGGTAGCAATAACGATTATGATCACCAGGGCTCGTTTTGGTTATACAATAATAATGAGGATGACCTTAATCTCTCCAACCCTAATTATTTTATGGACCCTAGTTTAGATCATCACCATCTTCATGATTATTCTTTTGAGTTTCTTGAGGACATCGGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

257

Amino Acids

29.3

Weight (kDa)

6.0

Isoelectric Point (pI)

47.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 12 - 59 4.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 15 - 72 7.8e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 65 - 110 1.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 68 - 113 1.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 195
AciI CCGC 4 cut(s) 141, 195, 483, 513
AcoI YGGCCR 1 cut(s) 514
AcsI RAATTY 1 cut(s) 319
AfaI GTAC 1 cut(s) 394
AgsI TTSAA 2 cut(s) 133, 436
AjnI CCWGG 1 cut(s) 633
AluBI AGCT 3 cut(s) 150, 340, 448
AluI AGCT 3 cut(s) 150, 340, 448
Alw26I GTCTC 2 cut(s) 267, 590
AoxI GGCC 1 cut(s) 514
ApeKI GCWGC 5 cut(s) 150, 454, 457, 500, 503
ApoI RAATTY 1 cut(s) 319
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 703
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 4 cut(s) 106, 506, 623, 713
AsuII TTCGAA 1 cut(s) 476
AvaII GGWCC 1 cut(s) 703
BanII GRGCYC 2 cut(s) 182, 641
BbvI GCAGC 5 cut(s) 137, 466, 469, 512, 515
BccI CCATC 3 cut(s) 2, 601, 732
BciT130I CCWGG 1 cut(s) 635
BclI TGATCA 2 cut(s) 532, 628
BcnI CCSGG 1 cut(s) 285
BcoDI GTCTC 2 cut(s) 267, 590
BfaI CTAG 2 cut(s) 708, 769
BfmI CTRYAG 3 cut(s) 151, 441, 449
BisI GCNGC 7 cut(s) 151, 196, 455, 458, 501, 504, 514
BlsI GCNGC 7 cut(s) 152, 197, 456, 459, 502, 505, 515
BmcAI AGTACT 1 cut(s) 394
Bme1390I CCNGG 2 cut(s) 285, 635
Bme18I GGWCC 1 cut(s) 703
BmgT120I GGNCC 1 cut(s) 703
BmiI GGNNCC 2 cut(s) 282, 705
BmrFI CCNGG 2 cut(s) 285, 635
Bpu14I TTCGAA 1 cut(s) 476
BpuMI CCSGG 1 cut(s) 285
BsaBI GATNNNNATC 3 cut(s) 531, 554, 627
BsaI GGTCTC 1 cut(s) 267
BsaJI CCNNGG 4 cut(s) 88, 247, 517, 634
Bse1I ACTGG 1 cut(s) 320
Bse8I GATNNNNATC 3 cut(s) 531, 554, 627
BseBI CCWGG 1 cut(s) 635
BseDI CCNNGG 4 cut(s) 88, 247, 517, 634
BseGI GGATG 4 cut(s) 171, 527, 594, 673
BseJI GATNNNNATC 3 cut(s) 531, 554, 627
BseMII CTCAG 3 cut(s) 167, 198, 417
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 2 cut(s) 68, 236
BseXI GCAGC 5 cut(s) 137, 466, 469, 512, 515
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 516
BsiSI CCGG 2 cut(s) 273, 284
BsmAI GTCTC 2 cut(s) 267, 590
BsmBI CGTCTC 1 cut(s) 590
BsnI GGCC 1 cut(s) 516
Bso31I GGTCTC 1 cut(s) 267
Bsp119I TTCGAA 1 cut(s) 476
Bsp1286I GDGCHC 2 cut(s) 182, 641
Bsp143I GATC 4 cut(s) 220, 532, 628, 715
Bsp19I CCATGG 2 cut(s) 88, 517
BspACI CCGC 4 cut(s) 141, 195, 483, 513
BspANI GGCC 1 cut(s) 516
BspCNI CTCAG 3 cut(s) 168, 199, 416
BspFNI CGCG 1 cut(s) 195
BspHI TCATGA 2 cut(s) 535, 730
BspLI GGNNCC 2 cut(s) 282, 705
BspMAI CTGCAG 2 cut(s) 155, 445
BspT104I TTCGAA 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 267
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 4 cut(s) 88, 247, 517, 634
BssMI GATC 4 cut(s) 220, 532, 628, 715
BssT1I CCWWGG 2 cut(s) 88, 517
Bst2UI CCWGG 1 cut(s) 635
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 128
BstBI TTCGAA 1 cut(s) 476
BstDEI CTNAG 3 cut(s) 176, 207, 403
BstDSI CCRYGG 2 cut(s) 88, 517
BstF5I GGATG 4 cut(s) 171, 527, 594, 673
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 4 cut(s) 223, 535, 631, 718
BstMAI GTCTC 2 cut(s) 267, 590
BstMBI GATC 4 cut(s) 220, 532, 628, 715
BstMWI GCNNNNNNNGC 2 cut(s) 147, 454
BstNI CCWGG 1 cut(s) 635
BstSCI CCNGG 2 cut(s) 283, 633
BstSFI CTRYAG 3 cut(s) 151, 441, 449
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 5 cut(s) 137, 466, 469, 512, 515
BsuRI GGCC 1 cut(s) 516
BtgI CCRYGG 2 cut(s) 88, 517
BtsCI GGATG 4 cut(s) 171, 527, 594, 673
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 3 cut(s) 313, 438, 589
CciI TCATGA 2 cut(s) 535, 730
CfoI GCGC 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 703
Csp6I GTAC 1 cut(s) 393
CviAII CATG 5 cut(s) 23, 89, 518, 536, 731
CviQI GTAC 1 cut(s) 393
DdeI CTNAG 3 cut(s) 176, 207, 403
DpnI GATC 4 cut(s) 222, 534, 630, 717
DpnII GATC 4 cut(s) 220, 532, 628, 715
EaeI YGGCCR 1 cut(s) 514
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco130I CCWWGG 2 cut(s) 88, 517
Eco24I GRGCYC 2 cut(s) 182, 641
Eco31I GGTCTC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 703
EcoRI GAATTC 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 633
EcoT14I CCWWGG 2 cut(s) 88, 517
EcoT38I GRGCYC 2 cut(s) 182, 641
ErhI CCWWGG 2 cut(s) 88, 517
Esp3I CGTCTC 1 cut(s) 590
FaeI CATG 5 cut(s) 26, 92, 521, 539, 734
FatI CATG 5 cut(s) 22, 88, 517, 535, 730
FauI CCCGC 1 cut(s) 134
FbaI TGATCA 2 cut(s) 532, 628
Fnu4HI GCNGC 7 cut(s) 151, 196, 455, 458, 501, 504, 514
FokI GGATG 4 cut(s) 178, 534, 601, 680
FriOI GRGCYC 2 cut(s) 182, 641
Fsp4HI GCNGC 7 cut(s) 151, 196, 455, 458, 501, 504, 514
FspBI CTAG 2 cut(s) 708, 769
GlaI GCGC 1 cut(s) 194
GluI GCNGC 7 cut(s) 151, 196, 455, 458, 501, 504, 514
HaeIII GGCC 1 cut(s) 516
HapII CCGG 2 cut(s) 273, 284
HhaI GCGC 1 cut(s) 195
Hin1II CATG 5 cut(s) 26, 92, 521, 539, 734
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HinfI GANTC 4 cut(s) 19, 106, 111, 473
HpaII CCGG 2 cut(s) 273, 284
HphI GGTGA 4 cut(s) 106, 506, 623, 713
Hpy188I TCNGA 5 cut(s) 177, 208, 251, 267, 406
Hpy188III TCNNGA 3 cut(s) 536, 731, 752
HpyAV CCTTC 1 cut(s) 9
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4V TGCA 2 cut(s) 153, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 454
HpyF3I CTNAG 3 cut(s) 176, 207, 403
Hsp92II CATG 5 cut(s) 26, 92, 521, 539, 734
HspAI GCGC 1 cut(s) 193
Ksp22I TGATCA 2 cut(s) 532, 628
Kzo9I GATC 4 cut(s) 220, 532, 628, 715
Lsp1109I GCAGC 5 cut(s) 137, 466, 469, 512, 515
MaeI CTAG 2 cut(s) 708, 769
MaeIII GTNAC 2 cut(s) 112, 121
MalI GATC 4 cut(s) 222, 534, 630, 717
MboI GATC 4 cut(s) 220, 532, 628, 715
MboII GAAGA 6 cut(s) 17, 145, 224, 300, 387, 719
MhlI GDGCHC 2 cut(s) 182, 641
MluCI AATT 3 cut(s) 63, 319, 691
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 708
MseI TTAA 1 cut(s) 675
MslI CAYNNNNRTG 2 cut(s) 522, 729
MspI CCGG 2 cut(s) 273, 284
MspR9I CCNGG 2 cut(s) 285, 635
MvaI CCWGG 1 cut(s) 635
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 147, 454
NciI CCSGG 1 cut(s) 285
NcoI CCATGG 2 cut(s) 88, 517
NdeII GATC 4 cut(s) 220, 532, 628, 715
NlaIII CATG 5 cut(s) 26, 92, 521, 539, 734
NlaIV GGNNCC 2 cut(s) 282, 705
NmuCI GTSAC 1 cut(s) 112
NspV TTCGAA 1 cut(s) 476
PagI TCATGA 2 cut(s) 535, 730
PfeI GAWTC 3 cut(s) 19, 106, 473
PfoI TCCNGGA 1 cut(s) 283
PkrI GCNGC 7 cut(s) 152, 197, 456, 459, 502, 505, 515
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 633
PspGI CCWGG 1 cut(s) 633
PspN4I GGNNCC 2 cut(s) 282, 705
PspPI GGNCC 1 cut(s) 703
PstI CTGCAG 2 cut(s) 155, 445
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
RseI CAYNNNNRTG 2 cut(s) 522, 729
SaqAI TTAA 1 cut(s) 675
SatI GCNGC 7 cut(s) 151, 196, 455, 458, 501, 504, 514
Sau3AI GATC 4 cut(s) 220, 532, 628, 715
Sau96I GGNCC 1 cut(s) 703
ScaI AGTACT 1 cut(s) 394
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 2 cut(s) 285, 635
SduI GDGCHC 2 cut(s) 182, 641
SfcI CTRYAG 3 cut(s) 151, 441, 449
SfuI TTCGAA 1 cut(s) 476
SinI GGWCC 1 cut(s) 703
SmiMI CAYNNNNRTG 2 cut(s) 522, 729
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
Sse9I AATT 3 cut(s) 63, 319, 691
SsiI CCGC 4 cut(s) 141, 195, 483, 513
SspMI CTAG 2 cut(s) 708, 769
StyD4I CCNGG 2 cut(s) 283, 633
StyI CCWWGG 2 cut(s) 88, 517
TaaI ACNGT 1 cut(s) 187
TaqI TCGA 2 cut(s) 109, 476
TasI AATT 3 cut(s) 63, 319, 691
TatI WGTACW 1 cut(s) 392
TauI GCSGC 2 cut(s) 198, 516
TfiI GAWTC 3 cut(s) 19, 106, 473
Tru1I TTAA 1 cut(s) 675
Tru9I TTAA 1 cut(s) 675
TscAI CASTG 3 cut(s) 320, 445, 589
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 5 cut(s) 150, 454, 457, 500, 503
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 182, 719
TspRI CASTG 3 cut(s) 320, 445, 589
VpaK11BI GGWCC 1 cut(s) 703
XapI RAATTY 1 cut(s) 319
XspI CTAG 2 cut(s) 708, 769
ZrmI AGTACT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.