pycom06g15550
MYB Family

Transcription factor WER-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0005570
Physical Location & Seq
Reverse (-)
20070855 .. 20072909
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g15550.2

Sequence Viewer

Length: 942 bp
ATGAAAATGTATATCCGTACATGTATGCCAAGCAAAAGTAGTGCCGATGGCTGCAGATATAGAGAGATGGTGAAATTAGATCACCACCCACTCACTAATTCTATCACACATGAATCACACACTCTCTCCCAAGTCTCAGCACTACTAGCCACCGCATTCAGTAGACTTCCAACTAAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGCTTTACAACATCTGCAAGAATGGAAAGTGGGGGGAATGAGTATAAGAAAGGTCTTTGGACAGTGGAGGAAGACAGAATTCTAATGGATTATATCAGGGAGCATGGCAAGGGCAAGTGGAATCGTGTCAATAAAGTCACAGGATTGAGGAGGTGCGGCAAAAGTTGCAGATTAAGGTGGATGAACTATCTAAGTCCCAACGTGAAGAGAGGTGACTTCTCTGAGGAAGAAGATGACCTCATCATTCGACTCCATAACCTCCTTGGCAACAGATGGTCCTTGATTGCTGGACGTGTTCCTGGCAGAACTGACAACCAAGTCAAGAACCATTGGAACACTCATTTGAGCAAGAAGCTTGGTGTCAGTTCAAAGAAAGGAAAGACCAAAGCCAAGACTTATCCTGACTCAGAACGAGCAAAAAAGAACTCCTTCACGCCCTTGTCGAACTCAAACTCCGAGTTGCAGCCACTTCCCAATTCCGATTCCAATTCCAATATATTCGGTGATGATGAAGTTGCAGCTGTCATTAATGGATTTGATGATAAGATAATGAACGTCAAGGACAATAATATTGGCTTTAAAAGTGGGGTTGGTTTTAGCGAAATGTGGGAGGCGATGATGATTAGCAATGACCTTAATCTATATAGCTCTTATTTATTGGACCCTACCCTGGATGATCACTACCCTTTTCAATTTGATAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

314

Amino Acids

35.38

Weight (kDa)

9.05

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 551
AccI GTMKAC 1 cut(s) 163
AciI CCGC 2 cut(s) 153, 390
AcsI RAATTY 1 cut(s) 312
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 1 cut(s) 904
AflIII ACRYGT 2 cut(s) 20, 526
AgsI TTSAA 2 cut(s) 603, 926
AjiI CACGTC 1 cut(s) 527
AjnI CCWGG 2 cut(s) 532, 903
AloI GAACNNNNNNTCC 2 cut(s) 671, 703
AluBI AGCT 4 cut(s) 179, 589, 755, 882
AluI AGCT 4 cut(s) 179, 589, 755, 882
Alw26I GTCTC 1 cut(s) 139
ApeKI GCWGC 3 cut(s) 51, 697, 752
ApoI RAATTY 1 cut(s) 312
AseI ATTAAT 1 cut(s) 762
Asp700I GAANNNNTTC 1 cut(s) 662
AspS9I GGNCC 2 cut(s) 510, 895
AsuHPI GGTGA 4 cut(s) 74, 82, 458, 749
AvaII GGWCC 2 cut(s) 510, 895
BbsI GAAGAC 1 cut(s) 312
BbvI GCAGC 3 cut(s) 38, 709, 764
BccI CCATC 3 cut(s) 41, 61, 501
BciT130I CCWGG 2 cut(s) 534, 905
BclI TGATCA 1 cut(s) 910
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 1 cut(s) 52
BisI GCNGC 4 cut(s) 52, 391, 698, 753
BlsI GCNGC 4 cut(s) 53, 392, 699, 754
Bme1390I CCNGG 2 cut(s) 534, 905
Bme18I GGWCC 2 cut(s) 510, 895
BmgBI CACGTC 1 cut(s) 527
BmgT120I GGNCC 2 cut(s) 510, 895
BmiI GGNNCC 1 cut(s) 897
BmrFI CCNGG 2 cut(s) 534, 905
BpiI GAAGAC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 496, 903
BsaXI ACNNNNNCTCC 4 cut(s) 110, 140, 671, 701
Bsc4I CCNNNNNNNGG 1 cut(s) 904
Bse3DI GCAATG 1 cut(s) 868
BseBI CCWGG 2 cut(s) 534, 905
BseDI CCNNGG 2 cut(s) 496, 903
BseGI GGATG 2 cut(s) 420, 913
BseLI CCNNNNNNNGG 1 cut(s) 904
BseMI GCAATG 1 cut(s) 868
BseMII CTCAG 3 cut(s) 150, 447, 654
BseRI GAGGAG 1 cut(s) 397
BseXI GCAGC 3 cut(s) 38, 709, 764
BslFI GGGAC 1 cut(s) 414
BslI CCNNNNNNNGG 1 cut(s) 904
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 414
BsmI GAATGC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 79, 910
BspACI CCGC 2 cut(s) 153, 390
BspCNI CTCAG 3 cut(s) 149, 448, 653
BspLI GGNNCC 1 cut(s) 897
BspMAI CTGCAG 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 868
BssECI CCNNGG 2 cut(s) 496, 903
BssMI GATC 2 cut(s) 79, 910
BssT1I CCWWGG 1 cut(s) 496
Bst2UI CCWGG 2 cut(s) 534, 905
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 434
BstAPI GCANNNNNTGC 1 cut(s) 399
BstDEI CTNAG 4 cut(s) 136, 425, 456, 640
BstF5I GGATG 2 cut(s) 420, 913
BstKTI GATC 2 cut(s) 82, 913
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 2 cut(s) 79, 910
BstMWI GCNNNNNNNGC 2 cut(s) 146, 399
BstNI CCWGG 2 cut(s) 534, 905
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 2 cut(s) 532, 903
BstSFI CTRYAG 1 cut(s) 52
BstV1I GCAGC 3 cut(s) 38, 709, 764
BstV2I GAAGAC 1 cut(s) 312
BtgZI GCGATG 1 cut(s) 863
BtrI CACGTC 1 cut(s) 527
BtsCI GGATG 2 cut(s) 420, 913
BtsIMutI CAGTG 1 cut(s) 303
Cfr13I GGNCC 2 cut(s) 510, 895
Csp6I GTAC 1 cut(s) 18
CviAII CATG 3 cut(s) 21, 110, 338
CviJI RGCY 9 cut(s) 51, 149, 179, 589, 623, 700, 755, 810, 882
CviKI_1 RGCY 9 cut(s) 51, 149, 179, 589, 623, 700, 755, 810, 882
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 4 cut(s) 136, 425, 456, 640
DpnI GATC 2 cut(s) 81, 912
DpnII GATC 2 cut(s) 79, 910
DraI TTTAAA 1 cut(s) 814
DrdI GACNNNNNNGTC 1 cut(s) 551
DseDI GACNNNNNNGTC 1 cut(s) 551
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 496
Eco47I GGWCC 2 cut(s) 510, 895
EcoRI GAATTC 1 cut(s) 312
EcoRII CCWGG 2 cut(s) 532, 903
EcoT14I CCWWGG 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 496
FaeI CATG 3 cut(s) 24, 113, 341
FalI AAGNNNNNCTT 2 cut(s) 647, 679
FaqI GGGAC 1 cut(s) 414
FatI CATG 3 cut(s) 20, 109, 337
FbaI TGATCA 1 cut(s) 910
FblI GTMKAC 1 cut(s) 163
Fnu4HI GCNGC 4 cut(s) 52, 391, 698, 753
FokI GGATG 2 cut(s) 427, 920
Fsp4HI GCNGC 4 cut(s) 52, 391, 698, 753
FspBI CTAG 1 cut(s) 146
GluI GCNGC 4 cut(s) 52, 391, 698, 753
Hin1II CATG 3 cut(s) 24, 113, 341
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 5 cut(s) 113, 355, 483, 638, 716
HphI GGTGA 4 cut(s) 74, 82, 458, 749
Hpy166II GTNNAC 1 cut(s) 164
Hpy188I TCNGA 4 cut(s) 457, 643, 691, 715
Hpy188III TCNNGA 2 cut(s) 556, 635
Hpy8I GTNNAC 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 673
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 3 cut(s) 435, 526, 789
HpyCH4V TGCA 5 cut(s) 54, 251, 402, 697, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 399
HpyF3I CTNAG 4 cut(s) 136, 425, 456, 640
HpySE526I ACGT 3 cut(s) 435, 526, 789
Hsp92II CATG 3 cut(s) 24, 113, 341
Ksp22I TGATCA 1 cut(s) 910
Kzo9I GATC 2 cut(s) 79, 910
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 9 cut(s) 247, 316, 360, 507, 519, 546, 648, 890, 917
Lsp1109I GCAGC 3 cut(s) 38, 709, 764
MaeI CTAG 1 cut(s) 146
MaeII ACGT 3 cut(s) 435, 526, 789
MaeIII GTNAC 2 cut(s) 370, 446
MalI GATC 2 cut(s) 81, 912
MboI GATC 2 cut(s) 79, 910
MboII GAAGA 4 cut(s) 317, 451, 473, 476
MluCI AATT 7 cut(s) 74, 97, 312, 709, 721, 926, 934
MlyI GAGTC 2 cut(s) 477, 632
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 8 cut(s) 295, 375, 378, 437, 451, 482, 503, 838
MroXI GAANNNNTTC 1 cut(s) 662
MseI TTAA 4 cut(s) 407, 762, 813, 870
MspA1I CMGCKG 1 cut(s) 755
MspR9I CCNGG 2 cut(s) 534, 905
Mva1269I GAATGC 1 cut(s) 155
MvaI CCWGG 2 cut(s) 534, 905
MwoI GCNNNNNNNGC 2 cut(s) 146, 399
NdeII GATC 2 cut(s) 79, 910
NlaIII CATG 3 cut(s) 24, 113, 341
NlaIV GGNNCC 1 cut(s) 897
NmuCI GTSAC 2 cut(s) 370, 446
NspI RCATGY 1 cut(s) 24
PciI ACATGT 1 cut(s) 20
PcsI WCGNNNNNNNCGW 1 cut(s) 674
PctI GAATGC 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 662
PfeI GAWTC 3 cut(s) 113, 355, 716
PkrI GCNGC 4 cut(s) 53, 392, 699, 754
PleI GAGTC 2 cut(s) 477, 632
PpsI GAGTC 2 cut(s) 477, 632
PscI ACATGT 1 cut(s) 20
PshBI ATTAAT 1 cut(s) 762
Psp6I CCWGG 2 cut(s) 532, 903
PspGI CCWGG 2 cut(s) 532, 903
PspN4I GGNNCC 1 cut(s) 897
PspPI GGNCC 2 cut(s) 510, 895
PstI CTGCAG 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 755
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SaqAI TTAA 4 cut(s) 407, 762, 813, 870
SatI GCNGC 4 cut(s) 52, 391, 698, 753
Sau3AI GATC 2 cut(s) 79, 910
Sau96I GGNCC 2 cut(s) 510, 895
SchI GAGTC 2 cut(s) 477, 632
ScrFI CCNGG 2 cut(s) 534, 905
SfcI CTRYAG 1 cut(s) 52
SinI GGWCC 2 cut(s) 510, 895
Sse9I AATT 7 cut(s) 74, 97, 312, 709, 721, 926, 934
SsiI CCGC 2 cut(s) 153, 390
SspI AATATT 1 cut(s) 805
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 2 cut(s) 532, 903
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 3 cut(s) 438, 529, 792
TaqI TCGA 2 cut(s) 481, 677
TasI AATT 7 cut(s) 74, 97, 312, 709, 721, 926, 934
TauI GCSGC 1 cut(s) 393
TfiI GAWTC 3 cut(s) 113, 355, 716
Tru1I TTAA 4 cut(s) 407, 762, 813, 870
Tru9I TTAA 4 cut(s) 407, 762, 813, 870
TscAI CASTG 1 cut(s) 303
TseFI GTSAC 2 cut(s) 370, 446
TseI GCWGC 3 cut(s) 51, 697, 752
Tsp45I GTSAC 2 cut(s) 370, 446
TspDTI ATGAA 5 cut(s) 17, 126, 431, 759, 800
TspGWI ACGGA 1 cut(s) 5
TspRI CASTG 1 cut(s) 303
VpaK11BI GGWCC 2 cut(s) 510, 895
VspI ATTAAT 1 cut(s) 762
XapI RAATTY 1 cut(s) 312
XceI RCATGY 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 662
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.